HUGE

Gene/Protein Characteristic Table for KIAA1690

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07133
Accession No. :	AB051477
Description :	Transmembrane protein 108 precursor.
HUGO Gene Name :
Clone Name :	fh27434 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4835 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3245 bp

Genome contig ID gi89161205f_134226607
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GCACTCCAGCCTGGGCAACGGAGCTAGACTCCATC
Flanking genome sequence
(364612 - 364661)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAGAAAAAAAAAAACCATAGACTTTGGAGTCCAGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 f 134430790 134591217 3 98.9 Terminal No-hit

Features of the protein sequence	Description

Length: 482 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAQ88747	4.8e-120	99.8	KRSL1875 [Homo ...	Homo sapiens
Q6UXF1	5.2e-120	99.8	Transmembrane p...	Homo sapiens
XP_001115415	9.6e-112	93.5	similar to muci...	Macaca mulatta
XP_516759	1.1e-93	91.8	similar to Tran...	Pan troglodytes
CAB66513	8.6e-93	100.0	hypothetical pr...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ScanRegExp IPR010916 1 37 PS00430 TonB box

Search method	interpro_ID	From	To	Entry	Definition
ScanRegExp	IPR010916	1	37	PS00430	TonB box

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 3 YCQLLSFLLILALTEALAFAIQE 25 PRIMARY 23

2 455 TICLSKMDIAWVILAISVPISSC 477 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	3	YCQLLSFLLILALTEALAFAIQE	25	PRIMARY	23
2	455	TICLSKMDIAWVILAISVPISSC	477	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTGGCTTCAGCTCTCCTCATC

Primer_r
: CACACTGCAGAAGGGTAACAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: CCR
Primer_f	: TTGGCTTCAGCTCTCCTCATC
Primer_r	: CACACTGCAGAAGGGTAACAC
PCR product length	: 136 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3245 bp
Genome contig ID	gi89161205f_134226607
PolyA signal sequence (None)	+--------+--------+----*----+---- GCACTCCAGCCTGGGCAACGGAGCTAGACTCCATC
Flanking genome sequence (364612 - 364661)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAGAAAAAAAAAAACCATAGACTTTGGAGTCCAGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	f	134430790	134591217	3	98.9	Terminal No-hit

Gene/Protein Characteristic Table for KIAA1690

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information