HUGE

Gene/Protein Characteristic Table for KIAA1698

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05523
Accession No. :	AB051485
Description :	Integrator complex subunit 5.
HUGO Gene Name :
Clone Name :	fj15036 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 2890 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 163 bp

Genome contig ID gi51511727r_62070905
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
CACTTTTTTTTTTCTAAATAAAATTTGCCAACTTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGAAAACCAGTCCAGTGCTTCTGTCATGCTGAGAGCGTGCAAAGTCTGAC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 r 62170905 62173794 1 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 908 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q6P9B9	100.0	Integrator comp...	Homo sapiens
XP_001154137	99.8	integrator comp...	Pan troglodytes
XP_001116423	99.3	similar to inte...	Macaca mulatta
XP_001494846	97.9	integrator comp...	Equus caballus
ABM06097	96.7	integrator comp...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 751 KLVAAAPPALCYCSVLLRGLLAA 773 PRIMARY 23

2 821 SQLAPFEVRLLLLSVWGFLREHG 843 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	751	KLVAAAPPALCYCSVLLRGLLAA	773	PRIMARY	23
2	821	SQLAPFEVRLLLLSVWGFLREHG	843	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CATCGAGGCAACACAGAACTG

Primer_r
: GAAAACTGACCAAATCCCTCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	163 bp
Genome contig ID	gi51511727r_62070905
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- CACTTTTTTTTTTCTAAATAAAATTTGCCAACTTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGAAAACCAGTCCAGTGCTTCTGTCATGCTGAGAGCGTGCAAAGTCTGAC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	r	62170905	62173794	1	100.0	Perfect prediction

Primer_f	: CATCGAGGCAACACAGAACTG
Primer_r	: GAAAACTGACCAAATCCCTCC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1698

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information