HUGE

Gene/Protein Characteristic Table for KIAA1748

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00909
Accession No. :	AB051535
Description :	Probable palmitoyltransferase ZDHHC5.
HUGO Gene Name :	zinc finger, DHHC-type containing 5 (ZDHHC5)
Clone Name :	pj02084 [Vector Info]
Flexi ORF Clone :	pF1KSDA1748
Source :	Human brain (hippocampus)

Features of the cloned DNA sequence	Description

Length: 4545 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1149 bp

Genome contig ID gi51511727f_57092058
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
TTAAACCAACGAGGAATAAAAAGAAATCCTGATCT
Flanking genome sequence
(133172 - 133221)
----+----*----+----*----+----*----+----*----+----*
AACCAGCGCCCCCTGACTTGTGTTATTTTGTCTGGTTGAGACAGGGTGAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 f 57192058 57225228 12 99.7 Perfect prediction

Features of the protein sequence	Description

Length: 758 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9C0B5	100.0	Probable palmit...	Homo sapiens
Q2THX1	99.9	Probable palmit...	Pan troglodytes
Q5R838	99.7	Probable palmit...	Pongo abelii
XP_001915037	97.8	similar to memb...	Equus caballus
AAX68536	98.0	membrane-associ...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB033118	1.5e-06	37.3	KIAA1292
AB023163	5.1e-05	30.8	KIAA0946

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom IPR001594 147 182 PD003041 Zinc finger

HMMPfam IPR001594 138 202 PF01529 Zinc finger

ProfileScan IPR001594 147 197 PS50216 Zinc finger

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR001594	147	182	PD003041	Zinc finger
HMMPfam	IPR001594	138	202	PF01529	Zinc finger
ProfileScan	IPR001594	147	197	PS50216	Zinc finger

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 8 SFVLLSVASLLPFSCLFCRCVGL 30 PRIMARY 23

2 59 PVSAAAIFLVGATTLFFAFTCPG 81 PRIMARY 23

3 88 PAVPIYNAIMFLFVLANFSMATF 110 PRIMARY 23

4 193 FLFLLSLTAHIMGVFGFGLLYVL 215 PRIMARY 23

5 230 MAVMCVAGLFFIPVAGLTGFHVV 252 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	8	SFVLLSVASLLPFSCLFCRCVGL	30	PRIMARY	23
2	59	PVSAAAIFLVGATTLFFAFTCPG	81	PRIMARY	23
3	88	PAVPIYNAIMFLFVLANFSMATF	110	PRIMARY	23
4	193	FLFLLSLTAHIMGVFGFGLLYVL	215	PRIMARY	23
5	230	MAVMCVAGLFFIPVAGLTGFHVV	252	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AGTTGCAATCCATTCGTTCAG

Primer_r
: GGTATAGCCTAAAGGTGGGTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1149 bp
Genome contig ID	gi51511727f_57092058
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- TTAAACCAACGAGGAATAAAAAGAAATCCTGATCT
Flanking genome sequence (133172 - 133221)	----+--------+--------+--------+--------+----* AACCAGCGCCCCCTGACTTGTGTTATTTTGTCTGGTTGAGACAGGGTGAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	f	57192058	57225228	12	99.7	Perfect prediction

Primer_f	: AGTTGCAATCCATTCGTTCAG
Primer_r	: GGTATAGCCTAAAGGTGGGTC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1748

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information