HUGE

Gene/Protein Characteristic Table for KIAA1793

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01181
Accession No. :	AB058696
Description :	coiled-coil domain containing 136.
HUGO Gene Name :	coiled-coil domain containing 136 (CCDC136)
Clone Name :	fj07087 [Vector Info]
Flexi ORF Clone :	pF1KA1793
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4168 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 336 bp

Genome contig ID gi89161213f_128119335
PolyA signal sequence
(ATTAAA,-21)
+----*----+----*----+----*----+----
CTGAGTTCCTTGTAATTAAATATCAACTGAATTAC
Flanking genome sequence
(130086 - 130135)
----+----*----+----*----+----*----+----*----+----*
ATGAGACTGTGGATTTTTATTTGCTAAATGCCTCACAACACAACCAGAAC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 f 128219335 128249419 18 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 1270 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q96JN2	100.0	Coiled-coil dom...	Homo sapiens
NP_073579	99.9	coiled-coil dom...	Homo sapiens
XP_001090156	97.3	similar to sarc...	Macaca mulatta
EAW83688	98.2	hypothetical pr...	Homo sapiens
XP_001502803	81.8	coiled-coil dom...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB046821	2.1e-06	31.0	KIAA1601
AB046785	0.00097	23.6	KIAA1565

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1245 PIFSLPLVGLVVISALLWCWWA 1266 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1245	PIFSLPLVGLVVISALLWCWWA	1266	PRIMARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AGCAGCAGAGGATTCCGCAAC

Primer_r
: CTGAGAGACCTAAACTACCGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	336 bp
Genome contig ID	gi89161213f_128119335
PolyA signal sequence (ATTAAA,-21)	+--------+--------+----*----+---- CTGAGTTCCTTGTAATTAAATATCAACTGAATTAC
Flanking genome sequence (130086 - 130135)	----+--------+--------+--------+--------+----* ATGAGACTGTGGATTTTTATTTGCTAAATGCCTCACAACACAACCAGAAC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	f	128219335	128249419	18	99.9	Perfect prediction

Primer_f	: AGCAGCAGAGGATTCCGCAAC
Primer_r	: CTGAGAGACCTAAACTACCGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1793

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information