HUGE

Gene/Protein Characteristic Table for KIAA1843

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05721
Accession No. :	AB058746
Description :
HUGO Gene Name :
Clone Name :	bf02364 [Vector Info]
Source :	Human adult brain
Note :	We replaced pj01248, former representative clones for KIAA1843 with bf02364. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 8010 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2673 bp

Genome contig ID gi89161199f_210302198
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CACTATGAGTTGGCCAGTCTAGGATTTATGTGAAG
Flanking genome sequence
(241087 - 241136)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAATTTAATTGTTTATGTAATATCTAGAGTCTGGTCCTGACAAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 2 f 210402198 210543283 37 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 1778 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW70470	100.0	chromosome 2 op...	Homo sapiens
EAW70465	100.0	chromosome 2 op...	Homo sapiens
EAW70467	100.0	chromosome 2 op...	Homo sapiens
NP_115893	100.0	chromosome 2 op...	Homo sapiens
XP_001102174	99.5	similar to CG18...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CCATCGAATTTGCCTGTCACC

Primer_r
: AATATGTCGGTGGTCTCTCCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: CCR
Primer_f	: CCATCGAATTTGCCTGTCACC
Primer_r	: AATATGTCGGTGGTCTCTCCC
PCR product length	: 95 bp
PCR conditions	: 15 °C66 sec60 °C30 sec187(1.6k) cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2673 bp
Genome contig ID	gi89161199f_210302198
PolyA signal sequence (None)	+--------+--------+----*----+---- CACTATGAGTTGGCCAGTCTAGGATTTATGTGAAG
Flanking genome sequence (241087 - 241136)	----+--------+--------+--------+--------+----* AAAAAAAAATTTAATTGTTTATGTAATATCTAGAGTCTGGTCCTGACAAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	2	f	210402198	210543283	37	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA1843

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information