HUGE

Gene/Protein Characteristic Table for KIAA1846

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04033
Accession No. :	AB058749
Description :	Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor.
HUGO Gene Name :
Clone Name :	fg06344s1 [Vector Info]
Source :	Human fetal brain
Note :	We replaced fg06344, former representative clones for KIAA1846 with fg06344s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 2597 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1530 bp

Genome contig ID gi51511747r_24834868
PolyA signal sequence
(AATAAA,-26)
+----*----+----*----+----*----+----
GGGAGTTCAAATAAAGCTTTATTTTGTTCATTTTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TCTTTGTGGTGATTTTTTTGGGTCCAGTAATGCTACTCTTTTTTTTTCCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 20 r 24934868 24950129 9 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 354 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAC03853	2e-150	100.0	unnamed protein...	Homo sapiens
XP_001149649	2.3e-150	100.0	acyl-CoA synthe...	Pan troglodytes
XP_001149714	2.4e-150	100.0	acyl-CoA synthe...	Pan troglodytes
BAC86035	2.6e-150	100.0	unnamed protein...	Homo sapiens
XP_001149851	2.8e-150	100.0	acyl-CoA synthe...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000873 1 245 PF00501 AMP-dependent synthetase and ligase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000873	1	245	PF00501	AMP-dependent synthetase and ligase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GAGCTATTGCAAGTCTGGTGT

Primer_r
: TATTCACAGGCAGCTTTAGAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1530 bp
Genome contig ID	gi51511747r_24834868
PolyA signal sequence (AATAAA,-26)	+--------+--------+----*----+---- GGGAGTTCAAATAAAGCTTTATTTTGTTCATTTTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TCTTTGTGGTGATTTTTTTGGGTCCAGTAATGCTACTCTTTTTTTTTCCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	20	r	24934868	24950129	9	99.3	Perfect prediction

Primer_f	: GAGCTATTGCAAGTCTGGTGT
Primer_r	: TATTCACAGGCAGCTTTAGAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1846

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information