HUGE

Gene/Protein Characteristic Table for KIAA1891

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07319
Accession No. :	AB067478
Description :	Ubiquitin carboxyl-terminal hydrolase 38.
HUGO Gene Name :	ubiquitin specific peptidase 38 (USP38)
Clone Name :	fk02783 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3373 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1029 bp

Genome contig ID gi89161207f_144236316
PolyA signal sequence
(ATTAAA,-18)
+----*----+----*----+----*----+----
TACTTATTCCTCAGAATATTAAACATTGATCACAT
Flanking genome sequence
(125775 - 125824)
----+----*----+----*----+----*----+----*----+----*
ATTTTTAGAGTTTTACATTTGGGTTTTTTGTTTGTTTGTTTCAGTCATAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 f 144328532 144362089 9 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 780 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q8NB14	100.0	Ubiquitin carbo...	Homo sapiens
XP_517457	99.5	hypothetical pr...	Pan troglodytes
XP_001092815	97.7	similar to ubiq...	Macaca mulatta
XP_001502179	93.2	ubiquitin speci...	Equus caballus
XP_533279	92.3	similar to ubiq...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB037793	1.4e-53	43.8	KIAA1372
AB028980	0.00018	26.5	KIAA1057
AB011142	0.001	21.7	KIAA0570

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001394 180 684 PF00443 Peptidase C19

ProfileScan IPR001394 183 688 PS50235 Peptidase C19

ScanRegExp IPR001394 184 199 PS00972 Peptidase C19

IPR001394 578 596 PS00973 Peptidase C19

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001394	180	684	PF00443	Peptidase C19
ProfileScan	IPR001394	183	688	PS50235	Peptidase C19
ScanRegExp	IPR001394	184	199	PS00972	Peptidase C19
IPR001394	578	596	PS00973	Peptidase C19

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 30 ALLKGLAAVQKFTILIDVTLLKI 52 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	30	ALLKGLAAVQKFTILIDVTLLKI	52	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TCTGCTTCATGTTCATTTCGG

Primer_r
: GTGCATTTTGGACTCTCTCAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1029 bp
Genome contig ID	gi89161207f_144236316
PolyA signal sequence (ATTAAA,-18)	+--------+--------+----*----+---- TACTTATTCCTCAGAATATTAAACATTGATCACAT
Flanking genome sequence (125775 - 125824)	----+--------+--------+--------+--------+----* ATTTTTAGAGTTTTACATTTGGGTTTTTTGTTTGTTTGTTTCAGTCATAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	f	144328532	144362089	9	99.2	Perfect prediction

Primer_f	: TCTGCTTCATGTTCATTTCGG
Primer_r	: GTGCATTTTGGACTCTCTCAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1891

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information