(Linear) (Six-base) MAPSORT of: KIAA0396.seq Check: 5829 from: 1 to: 1881 KIAA0396.orf With 182 enzymes: SgfI * February 28, 2007 11:28 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 475 1881 Size: 475 1406 AatII G_ACGT'C Cuts at: 0 1517 1881 Size: 1517 364 AccI GT'mk_AC Cuts at: 0 23 1881 Size: 23 1858 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 605 1881 Size: 605 1276 AfeI AGC'GCT Cuts at: 0 136 1881 Size: 136 1745 AgeI A'CCGG_T Cuts at: 0 77 1881 Size: 77 1804 AleI CACnn'nnGTG Cuts at: 0 502 1881 Size: 502 1379 AlwNI CAG_nnn'CTG Cuts at: 0 939 1291 1881 Size: 939 352 590 Fragments arranged by size: 939 590 352 ApoI r'AATT_y Cuts at: 0 1075 1881 Size: 1075 806 AvaI C'yCGr_G Cuts at: 0 1805 1881 Size: 1805 76 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 1733 1766 1881 Size: 1733 33 115 Fragments arranged by size: 1733 115 33 BanI G'GyrC_C Cuts at: 0 229 262 769 1881 Size: 229 33 507 1112 Fragments arranged by size: 1112 507 229 33 BanII G_rGCy'C Cuts at: 0 1692 1881 Size: 1692 189 BbvCI CC'TCA_GC Cuts at: 0 1568 1881 Size: 1568 313 BglI GCCn_nnn'nGGC Cuts at: 0 14 1881 Size: 14 1867 BglII A'GATC_T Cuts at: 0 1409 1881 Size: 1409 472 Bme1580I G_kGCm'C Cuts at: 0 596 1605 1881 Size: 596 1009 276 Fragments arranged by size: 1009 596 276 BmrI ACTGGGnnnn_n' Cuts at: 0 1754 1881 Size: 1754 127 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 308 961 1472 1881 Size: 308 653 511 409 Fragments arranged by size: 653 511 409 308 Bpu10I CC'TnA_GC Cuts at: 0 1568 1881 Size: 1568 313 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1151 1774 1881 Size: 1151 623 107 Fragments arranged by size: 1151 623 107 BsaHI Gr'CG_yC Cuts at: 0 661 1514 1881 Size: 661 853 367 Fragments arranged by size: 853 661 367 BsaWI w'CCGG_w Cuts at: 0 77 1881 Size: 77 1804 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 323 353 1881 Size: 323 30 1528 Fragments arranged by size: 1528 323 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 1064 1881 Size: 1064 817 BseYI C'CCAG_C Cuts at: 0 589 1881 Size: 589 1292 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 232 302 1096 1395 1881 Size: 232 70 794 299 486 Fragments arranged by size: 794 486 299 232 70 BsiEI CG_ry'CG Cuts at: 0 735 1881 Size: 735 1146 BsiHKAI G_wGCw'C Cuts at: 0 1692 1881 Size: 1692 189 BsmI GAATG_Cn' Cuts at: 0 1581 1881 Size: 1581 300 Bsp1286I G_dGCh'C Cuts at: 0 596 1605 1692 1881 Size: 596 1009 87 189 Fragments arranged by size: 1009 596 189 87 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 475 1881 Size: 475 1406 BsrDI GCAATG_nn' Cuts at: 0 171 443 568 1881 Size: 171 272 125 1313 Fragments arranged by size: 1313 272 171 125 BsrFI r'CCGG_y Cuts at: 0 77 1881 Size: 77 1804 BssSI C'ACGA_G Cuts at: 0 1442 1881 Size: 1442 439 BstXI CCAn_nnnn'nTGG Cuts at: 0 904 1881 Size: 904 977 BstYI r'GATC_y Cuts at: 0 1149 1409 1844 1881 Size: 1149 260 435 37 Fragments arranged by size: 1149 435 260 37 BstZ17I GTA'TAC Cuts at: 0 24 1881 Size: 24 1857 Bsu36I CC'TnA_GG Cuts at: 0 932 1881 Size: 932 949 BtgI C'CryG_G Cuts at: 0 327 651 1580 1881 Size: 327 324 929 301 Fragments arranged by size: 929 327 324 301 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 138 1881 Size: 138 1743 BtsI GCAGTG_nn' Cuts at: 0 266 1090 1245 1881 Size: 266 824 155 636 Fragments arranged by size: 824 636 266 155 DraIII CAC_nnn'GTG Cuts at: 0 556 1881 Size: 556 1325 DrdI GACnn_nn'nnGTC Cuts at: 0 250 1881 Size: 250 1631 EaeI y'GGCC_r Cuts at: 0 32 59 648 1881 Size: 32 27 589 1233 Fragments arranged by size: 1233 589 32 27 EarI CTCTTCn'nnn_ Cuts at: 0 974 1856 1881 Size: 974 882 25 Fragments arranged by size: 974 882 25 EcoICRI GAG'CTC Cuts at: 0 1690 1881 Size: 1690 191 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 308 605 961 1472 1881 Size: 308 297 356 511 409 Fragments arranged by size: 511 409 356 308 297 EcoO109I rG'GnC_Cy Cuts at: 0 6 1209 1881 Size: 6 1203 672 Fragments arranged by size: 1203 672 6 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 901 1881 Size: 901 980 HaeII r_GCGC'y Cuts at: 0 138 1881 Size: 138 1743 HincII GTy'rAC Cuts at: 0 1476 1881 Size: 1476 405 HindIII A'AGCT_T Cuts at: 0 752 1881 Size: 752 1129 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 724 1851 1881 Size: 724 1127 30 Fragments arranged by size: 1127 724 30 MscI TGG'CCA Cuts at: 0 650 1881 Size: 650 1231 MslI CAynn'nnrTG Cuts at: 0 500 502 902 1193 1508 1699 1881 Size: 500 2 400 291 315 191 182 Fragments arranged by size: 500 400 315 291 191 182 2 MspA1I CmG'CkG Cuts at: 0 286 583 1881 Size: 286 297 1298 Fragments arranged by size: 1298 297 286 NcoI C'CATG_G Cuts at: 0 327 651 1881 Size: 327 324 1230 Fragments arranged by size: 1230 327 324 NdeI CA'TA_TG Cuts at: 0 974 1881 Size: 974 907 NspI r_CATG'y Cuts at: 0 386 1881 Size: 386 1495 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 698 730 1881 Size: 698 32 1151 Fragments arranged by size: 1151 698 32 PstI C_TGCA'G Cuts at: 0 1522 1881 Size: 1522 359 PvuII CAG'CTG Cuts at: 0 286 583 1881 Size: 286 297 1298 Fragments arranged by size: 1298 297 286 SacI G_AGCT'C Cuts at: 0 1692 1881 Size: 1692 189 SapI GCTCTTCn'nnn_ Cuts at: 0 974 1881 Size: 974 907 SfcI C'TryA_G Cuts at: 0 635 1518 1881 Size: 635 883 363 Fragments arranged by size: 883 635 363 SmlI C'TyrA_G Cuts at: 0 1166 1789 1881 Size: 1166 623 92 Fragments arranged by size: 1166 623 92 SphI G_CATG'C Cuts at: 0 386 1881 Size: 386 1495 SspI AAT'ATT Cuts at: 0 1020 1281 1881 Size: 1020 261 600 Fragments arranged by size: 1020 600 261 StuI AGG'CCT Cuts at: 0 983 1881 Size: 983 898 StyI C'CwwG_G Cuts at: 0 327 651 1881 Size: 327 324 1230 Fragments arranged by size: 1230 327 324 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 749 757 1156 1881 Size: 749 8 399 725 Fragments arranged by size: 749 725 399 8 TatI w'GTAC_w Cuts at: 0 1622 1738 1881 Size: 1622 116 143 Fragments arranged by size: 1622 143 116 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 323 355 993 1025 1881 Size: 323 32 638 32 856 Fragments arranged by size: 856 638 323 32 32 ZraI GAC'GTC Cuts at: 0 1515 1881 Size: 1515 366 Enzymes that do cut: AarI AatII AccI AcuI AfeI AgeI AleI AlwNI ApoI AvaI BaeI BanI BanII BbvCI BglI BglII Bme1580I BmrI BpmI Bpu10I BpuEI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspMI BsrDI BsrFI BssSI BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI DraIII DrdI EaeI EarI EcoICRI Eco57MI EcoO109I FalI HaeII HincII HindIII MmeI MscI MslI MspA1I NcoI NdeI NspI PpiI PstI PvuII SacI SapI SfcI SmlI SphI SspI StuI StyI TaqII TatI TstI ZraI Enzymes that do not cut: Acc65I AclI AflII AflIII AhdI AlfI AloI ApaI ApaLI AscI AseI AsiSI AvrII BamHI BbeI BbsI BcgI BciVI BclI BfrBI BlpI BmgBI BmtI BplI BsaI BsaAI BsaBI BsiWI BsmBI BspEI BspHI BsrBI BsrGI BssHII BstAPI BstBI BstEII ClaI CspCI DraI EagI EciI EcoNI EcoRI EcoRV FseI FspI FspAI Hin4I HpaI KasI KpnI MfeI MluI NaeI NarI NgoMIV NheI NotI NruI NsiI PacI PasI PciI PflMI PfoI PmeI PmlI PpuMI PshAI PsiI PspOMI PspXI PsrI PvuI RsrII SacII SalI SanDI SbfI ScaI SexAI SfiI SfoI SgfI SgrAI SmaI SnaBI SpeI SrfI SwaI Tth111I XbaI XcmI XhoI XmaI XmnI