(Linear) (Six-base) MAPSORT of: KIAA0440.seq Check: 1462 from: 1 to: 5409 KIAA0440.orf With 182 enzymes: SgfI * September 18, 2009 16:59 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 5318 5409 Size: 5318 91 AatII G_ACGT'C Cuts at: 0 4838 5409 Size: 4838 571 AccI GT'mk_AC Cuts at: 0 1345 1672 5409 Size: 1345 327 3737 Fragments arranged by size: 3737 1345 327 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 488 1892 2615 4224 4827 5260 5275 5386 Size: 488 1404 723 1609 603 433 15 111 Cuts at: 5386 5409 Size: 23 Fragments arranged by size: 1609 1404 723 603 488 433 111 23 15 AflIII A'CryG_T Cuts at: 0 976 1449 5409 Size: 976 473 3960 Fragments arranged by size: 3960 976 473 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 433 465 1928 1960 5409 Size: 433 32 1463 32 3449 Fragments arranged by size: 3449 1463 433 32 32 AlwNI CAG_nnn'CTG Cuts at: 0 971 1543 1755 2100 2246 5160 5310 5409 Size: 971 572 212 345 146 2914 150 99 Fragments arranged by size: 2914 971 572 345 212 150 146 99 ApaLI G'TGCA_C Cuts at: 0 2221 5409 Size: 2221 3188 ApoI r'AATT_y Cuts at: 0 1176 1302 1480 1918 3169 5409 Size: 1176 126 178 438 1251 2240 Fragments arranged by size: 2240 1251 1176 438 178 126 AseI AT'TA_AT Cuts at: 0 2366 3778 5409 Size: 2366 1412 1631 Fragments arranged by size: 2366 1631 1412 AvaI C'yCGr_G Cuts at: 0 486 3688 3843 5409 Size: 486 3202 155 1566 Fragments arranged by size: 3202 1566 486 155 AvrII C'CTAG_G Cuts at: 0 4408 5409 Size: 4408 1001 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 4254 4287 5409 Size: 4254 33 1122 Fragments arranged by size: 4254 1122 33 BamHI G'GATC_C Cuts at: 0 3789 5409 Size: 3789 1620 BanI G'GyrC_C Cuts at: 0 73 3356 3961 4077 5409 Size: 73 3283 605 116 1332 Fragments arranged by size: 3283 1332 605 116 73 BanII G_rGCy'C Cuts at: 0 1631 1742 2558 2936 3766 4282 5409 Size: 1631 111 816 378 830 516 1127 Fragments arranged by size: 1631 1127 830 816 516 378 111 BbeI G_GCGC'C Cuts at: 0 3360 5409 Size: 3360 2049 BbsI GAAGACnn'nnnn_ Cuts at: 0 962 2603 2679 3452 4160 5282 5379 5409 Size: 962 1641 76 773 708 1122 97 30 Fragments arranged by size: 1641 1122 962 773 708 97 76 30 BbvCI CC'TCA_GC Cuts at: 0 1192 2962 5409 Size: 1192 1770 2447 Fragments arranged by size: 2447 1770 1192 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 2956 2990 5409 Size: 2956 34 2419 Fragments arranged by size: 2956 2419 34 BclI T'GATC_A Cuts at: 0 5139 5409 Size: 5139 270 BglI GCCn_nnn'nGGC Cuts at: 0 2953 3609 4205 5409 Size: 2953 656 596 1204 Fragments arranged by size: 2953 1204 656 596 BglII A'GATC_T Cuts at: 0 933 1455 2442 2987 4617 5409 Size: 933 522 987 545 1630 792 Fragments arranged by size: 1630 987 933 792 545 522 BlpI GC'TnA_GC Cuts at: 0 2557 5409 Size: 2557 2852 Bme1580I G_kGCm'C Cuts at: 0 1397 2225 3493 3891 4320 5409 Size: 1397 828 1268 398 429 1089 Fragments arranged by size: 1397 1268 1089 828 429 398 BmrI ACTGGGnnnn_n' Cuts at: 0 3426 3564 3761 4294 5409 Size: 3426 138 197 533 1115 Fragments arranged by size: 3426 1115 533 197 138 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 512 829 1966 2572 5409 Size: 512 317 1137 606 2837 Fragments arranged by size: 2837 1137 606 512 317 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 435 674 890 1103 1675 1741 2174 3296 Size: 435 239 216 213 572 66 433 1122 Cuts at: 3296 3330 3837 3855 4080 4782 5167 5409 Size: 34 507 18 225 702 385 242 Fragments arranged by size: 1122 702 572 507 435 433 385 242 239 225 216 213 66 34 18 Bpu10I CC'TnA_GC Cuts at: 0 135 1192 1736 2962 4053 4174 4586 5409 Size: 135 1057 544 1226 1091 121 412 823 Fragments arranged by size: 1226 1091 1057 823 544 412 135 121 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 291 829 3221 5139 5409 Size: 291 538 2392 1918 270 Fragments arranged by size: 2392 1918 538 291 270 BsaI GGTCTCn'nnnn_ Cuts at: 0 1119 3411 4562 4960 5409 Size: 1119 2292 1151 398 449 Fragments arranged by size: 2292 1151 1119 449 398 BsaAI yAC'GTr Cuts at: 0 1452 1728 4853 5409 Size: 1452 276 3125 556 Fragments arranged by size: 3125 1452 556 276 BsaBI GATnn'nnATC Cuts at: 0 1526 5409 Size: 1526 3883 BsaHI Gr'CG_yC Cuts at: 0 1661 3357 4804 4835 5409 Size: 1661 1696 1447 31 574 Fragments arranged by size: 1696 1661 1447 574 31 BsaWI w'CCGG_w Cuts at: 0 116 4154 5409 Size: 116 4038 1255 Fragments arranged by size: 4038 1255 116 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 433 463 466 496 1367 1397 1928 1958 Size: 433 30 3 30 871 30 531 30 Cuts at: 1958 2081 2111 2753 2783 4672 4702 5409 Size: 123 30 642 30 1889 30 707 Fragments arranged by size: 1889 871 707 642 531 433 123 30 30 30 30 30 30 30 3 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 867 1080 2774 2812 3117 3299 4371 4374 Size: 867 213 1694 38 305 182 1072 3 Cuts at: 4374 4383 4386 4389 4680 4685 4899 5184 5353 Size: 9 3 3 291 5 214 285 169 Cuts at: 5353 5409 Size: 56 Fragments arranged by size: 1694 1072 867 305 291 285 214 213 182 169 56 38 9 5 3 3 3 BseYI C'CCAG_C Cuts at: 0 478 1905 3543 3726 4003 4026 4711 5409 Size: 478 1427 1638 183 277 23 685 698 Fragments arranged by size: 1638 1427 698 685 478 277 183 23 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 589 3075 3274 5323 5409 Size: 589 2486 199 2049 86 Fragments arranged by size: 2486 2049 589 199 86 BsiHKAI G_wGCw'C Cuts at: 0 1631 1727 1742 1870 1977 2160 2225 2236 Size: 1631 96 15 128 107 183 65 11 Cuts at: 2236 2558 2660 4282 4787 5409 Size: 322 102 1622 505 622 Fragments arranged by size: 1631 1622 622 505 322 183 128 107 102 96 65 15 11 BsmI GAATG_Cn' Cuts at: 0 1550 3285 3825 5409 Size: 1550 1735 540 1584 Fragments arranged by size: 1735 1584 1550 540 Bsp1286I G_dGCh'C Cuts at: 0 1397 1631 1727 1742 1870 1977 2160 2225 Size: 1397 234 96 15 128 107 183 65 Cuts at: 2225 2236 2558 2660 2936 3493 3766 3891 4282 Size: 11 322 102 276 557 273 125 391 Cuts at: 4282 4320 4787 5409 Size: 38 467 622 Fragments arranged by size: 1397 622 557 467 391 322 276 273 234 183 128 125 107 102 96 65 38 15 11 BspHI T'CATG_A Cuts at: 0 1631 1796 5409 Size: 1631 165 3613 Fragments arranged by size: 3613 1631 165 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 5318 5409 Size: 5318 91 BsrDI GCAATG_nn' Cuts at: 0 906 1227 1359 3629 3882 4536 5409 Size: 906 321 132 2270 253 654 873 Fragments arranged by size: 2270 906 873 654 321 253 132 BsrFI r'CCGG_y Cuts at: 0 4204 5409 Size: 4204 1205 BsrGI T'GTAC_A Cuts at: 0 1883 2018 5409 Size: 1883 135 3391 Fragments arranged by size: 3391 1883 135 BssSI C'ACGA_G Cuts at: 0 4503 5409 Size: 4503 906 BstAPI GCAn_nnn'nTGC Cuts at: 0 238 2377 4983 5310 5409 Size: 238 2139 2606 327 99 Fragments arranged by size: 2606 2139 327 238 99 BstBI TT'CG_AA Cuts at: 0 1554 5409 Size: 1554 3855 BstXI CCAn_nnnn'nTGG Cuts at: 0 2152 4302 5409 Size: 2152 2150 1107 Fragments arranged by size: 2152 2150 1107 BstYI r'GATC_y Cuts at: 0 933 1455 1588 2442 2636 2987 3427 3538 Size: 933 522 133 854 194 351 440 111 Cuts at: 3538 3789 4617 5409 Size: 251 828 792 Fragments arranged by size: 933 854 828 792 522 440 351 251 194 133 111 Bsu36I CC'TnA_GG Cuts at: 0 814 2101 3665 4902 5326 5409 Size: 814 1287 1564 1237 424 83 Fragments arranged by size: 1564 1287 1237 814 424 83 BtgI C'CryG_G Cuts at: 0 1100 2408 2612 3097 3413 4008 4112 4143 Size: 1100 1308 204 485 316 595 104 31 Cuts at: 4143 4487 5409 Size: 344 922 Fragments arranged by size: 1308 1100 922 595 485 344 316 204 104 31 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 4538 5095 5409 Size: 4538 557 314 Fragments arranged by size: 4538 557 314 BtsI GCAGTG_nn' Cuts at: 0 601 5015 5409 Size: 601 4414 394 Fragments arranged by size: 4414 601 394 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 2663 2698 5409 Size: 2663 35 2711 Fragments arranged by size: 2711 2663 35 DrdI GACnn_nn'nnGTC Cuts at: 0 432 5409 Size: 432 4977 EarI CTCTTCn'nnn_ Cuts at: 0 503 1871 4331 4392 4660 4846 5409 Size: 503 1368 2460 61 268 186 563 Fragments arranged by size: 2460 1368 563 503 268 186 61 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 2938 5311 5409 Size: 2938 2373 98 Fragments arranged by size: 2938 2373 98 EcoICRI GAG'CTC Cuts at: 0 1629 1740 2556 4280 5409 Size: 1629 111 816 1724 1129 Fragments arranged by size: 1724 1629 1129 816 111 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 435 488 674 890 1103 1675 1741 1892 Size: 435 53 186 216 213 572 66 151 Cuts at: 1892 2174 2615 3296 3330 3837 3855 4080 4224 Size: 282 441 681 34 507 18 225 144 Cuts at: 4224 4782 4827 5167 5260 5275 5386 5409 Size: 558 45 340 93 15 111 23 Fragments arranged by size: 681 572 558 507 441 435 340 282 225 216 213 186 151 144 111 93 66 53 45 34 23 18 15 EcoNI CCTnn'n_nnAGG Cuts at: 0 4052 5314 5409 Size: 4052 1262 95 Fragments arranged by size: 4052 1262 95 EcoO109I rG'GnC_Cy Cuts at: 0 50 163 968 1170 3223 3661 5409 Size: 50 113 805 202 2053 438 1748 Fragments arranged by size: 2053 1748 805 438 202 113 50 EcoRI G'AATT_C Cuts at: 0 1176 1918 3169 5409 Size: 1176 742 1251 2240 Fragments arranged by size: 2240 1251 1176 742 EcoRV GAT'ATC Cuts at: 0 531 2127 5409 Size: 531 1596 3282 Fragments arranged by size: 3282 1596 531 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 1422 1939 3198 4357 5305 5409 Size: 1422 517 1259 1159 948 104 Fragments arranged by size: 1422 1259 1159 948 517 104 FspI TGC'GCA Cuts at: 0 898 5409 Size: 898 4511 HaeII r_GCGC'y Cuts at: 0 114 3360 4436 5409 Size: 114 3246 1076 973 Fragments arranged by size: 3246 1076 973 114 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 37 69 310 342 682 714 934 966 Size: 37 32 241 32 340 32 220 32 Cuts at: 966 1634 1666 3294 3326 3976 4008 4497 4529 Size: 668 32 1628 32 650 32 489 32 Cuts at: 4529 5409 Size: 880 Fragments arranged by size: 1628 880 668 650 489 340 241 220 37 32 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 0 1673 2904 5409 Size: 1673 1231 2505 Fragments arranged by size: 2505 1673 1231 HindIII A'AGCT_T Cuts at: 0 660 5409 Size: 660 4749 KasI G'GCGC_C Cuts at: 0 3356 5409 Size: 3356 2053 MfeI C'AATT_G Cuts at: 0 632 2135 2691 5409 Size: 632 1503 556 2718 Fragments arranged by size: 2718 1503 632 556 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 416 736 742 3418 4733 5063 5156 5409 Size: 416 320 6 2676 1315 330 93 253 Fragments arranged by size: 2676 1315 416 330 320 253 93 6 MslI CAynn'nnrTG Cuts at: 0 92 1001 3130 3397 3896 4083 5401 5409 Size: 92 909 2129 267 499 187 1318 8 Fragments arranged by size: 2129 1318 909 499 267 187 92 8 MspA1I CmG'CkG Cuts at: 0 1096 1900 3099 3590 4351 5145 5226 5409 Size: 1096 804 1199 491 761 794 81 183 Fragments arranged by size: 1199 1096 804 794 761 491 183 81 NaeI GCC'GGC Cuts at: 0 4206 5409 Size: 4206 1203 NarI GG'CG_CC Cuts at: 0 3357 5409 Size: 3357 2052 NcoI C'CATG_G Cuts at: 0 2408 2612 3413 4112 5409 Size: 2408 204 801 699 1297 Fragments arranged by size: 2408 1297 801 699 204 NgoMIV G'CCGG_C Cuts at: 0 4204 5409 Size: 4204 1205 NspI r_CATG'y Cuts at: 0 108 980 3129 3719 5409 Size: 108 872 2149 590 1690 Fragments arranged by size: 2149 1690 872 590 108 PciI A'CATG_T Cuts at: 0 976 5409 Size: 976 4433 PflMI CCAn_nnn'nTGG Cuts at: 0 2579 4149 5409 Size: 2579 1570 1260 Fragments arranged by size: 2579 1570 1260 PfoI T'CCnGG_A Cuts at: 0 1652 2544 4961 5409 Size: 1652 892 2417 448 Fragments arranged by size: 2417 1652 892 448 PmlI CAC'GTG Cuts at: 0 1728 5409 Size: 1728 3681 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 433 465 1928 1960 1998 2030 5409 Size: 433 32 1463 32 38 32 3379 Fragments arranged by size: 3379 1463 433 38 32 32 32 PpuMI rG'GwC_Cy Cuts at: 0 163 1170 3661 5409 Size: 163 1007 2491 1748 Fragments arranged by size: 2491 1748 1007 163 PshAI GACnn'nnGTC Cuts at: 0 1125 5409 Size: 1125 4284 PspXI vC'TCGA_Gb Cuts at: 0 3688 3843 5409 Size: 3688 155 1566 Fragments arranged by size: 3688 1566 155 PstI C_TGCA'G Cuts at: 0 5025 5409 Size: 5025 384 PvuII CAG'CTG Cuts at: 0 1096 1900 4351 5145 5226 5409 Size: 1096 804 2451 794 81 183 Fragments arranged by size: 2451 1096 804 794 183 81 SacI G_AGCT'C Cuts at: 0 1631 1742 2558 4282 5409 Size: 1631 111 816 1724 1127 Fragments arranged by size: 1724 1631 1127 816 111 SacII CC_GC'GG Cuts at: 0 3100 5409 Size: 3100 2309 SalI G'TCGA_C Cuts at: 0 1671 5409 Size: 1671 3738 SapI GCTCTTCn'nnn_ Cuts at: 0 503 4331 5409 Size: 503 3828 1078 Fragments arranged by size: 3828 1078 503 ScaI AGT'ACT Cuts at: 0 1385 5409 Size: 1385 4024 SexAI A'CCwGG_T Cuts at: 0 2266 5042 5409 Size: 2266 2776 367 Fragments arranged by size: 2776 2266 367 SfcI C'TryA_G Cuts at: 0 158 2700 5021 5332 5409 Size: 158 2542 2321 311 77 Fragments arranged by size: 2542 2321 311 158 77 SfoI GGC'GCC Cuts at: 0 3358 5409 Size: 3358 2051 SmlI C'TyrA_G Cuts at: 0 306 844 3236 3688 3843 5118 5409 Size: 306 538 2392 452 155 1275 291 Fragments arranged by size: 2392 1275 538 452 306 291 155 SpeI A'CTAG_T Cuts at: 0 1621 5409 Size: 1621 3788 SphI G_CATG'C Cuts at: 0 3129 5409 Size: 3129 2280 StuI AGG'CCT Cuts at: 0 33 1700 4890 5409 Size: 33 1667 3190 519 Fragments arranged by size: 3190 1667 519 33 StyI C'CwwG_G Cuts at: 0 1109 1397 1778 2408 2612 3413 4112 4408 Size: 1109 288 381 630 204 801 699 296 Cuts at: 4408 5409 Size: 1001 Fragments arranged by size: 1109 1001 801 699 630 381 296 288 204 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 1450 1638 1791 2094 3583 5409 Size: 1450 188 153 303 1489 1826 Fragments arranged by size: 1826 1489 1450 303 188 153 TatI w'GTAC_w Cuts at: 0 1383 1847 1883 2018 3140 5409 Size: 1383 464 36 135 1122 2269 Fragments arranged by size: 2269 1383 1122 464 135 36 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 3224 3256 4672 4704 5409 Size: 3224 32 1416 32 705 Fragments arranged by size: 3224 1416 705 32 32 Tth111I GACn'n_nGTC Cuts at: 0 961 2242 5409 Size: 961 1281 3167 Fragments arranged by size: 3167 1281 961 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 1404 3577 4485 5409 Size: 1404 2173 908 924 Fragments arranged by size: 2173 1404 924 908 XhoI C'TCGA_G Cuts at: 0 3688 3843 5409 Size: 3688 155 1566 Fragments arranged by size: 3688 1566 155 XmnI GAAnn'nnTTC Cuts at: 0 1922 2010 4340 5371 5409 Size: 1922 88 2330 1031 38 Fragments arranged by size: 2330 1922 1031 88 38 ZraI GAC'GTC Cuts at: 0 4836 5409 Size: 4836 573 Enzymes that do cut: AarI AatII AccI AcuI AflIII AloI AlwNI ApaLI ApoI AseI AvaI AvrII BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BclI BglI BglII BlpI Bme1580I BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiHKAI BsmI Bsp1286I BspHI BspMI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstXI BstYI Bsu36I BtgI BtgZI BtsI CspCI DrdI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII KasI MfeI MmeI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PciI PflMI PfoI PmlI PpiI PpuMI PshAI PspXI PstI PvuII SacI SacII SalI SapI ScaI SexAI SfcI SfoI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XcmI XhoI XmnI ZraI Enzymes that do not cut: Acc65I AclI AfeI AflII AgeI AhdI AleI AlfI ApaI AscI AsiSI BciVI BfrBI BmgBI BmtI BsiEI BsiWI BsmBI BspEI BsrBI BssHII BstEII BstZ17I ClaI DraI DraIII EaeI EagI FseI FspAI HpaI KpnI MluI MscI NdeI NheI NotI NruI NsiI PacI PasI PmeI PsiI PspOMI PsrI PvuI RsrII SanDI SbfI SfiI SgfI SgrAI SmaI SnaBI SrfI SspI SwaI XbaI XmaI