(Linear) (Six-base) MAPSORT of: KIAA0466.seq Check: 8880 from: 1 to: 3582 KIAA0466.orf With 182 enzymes: SgfI * October 24, 2006 15:12 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 713 1452 2031 2850 3582 Size: 713 739 579 819 732 Fragments arranged by size: 819 739 732 713 579 Acc65I G'GTAC_C Cuts at: 0 3278 3582 Size: 3278 304 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 313 1102 2212 2680 3582 Size: 313 789 1110 468 902 Fragments arranged by size: 1110 902 789 468 313 AflII C'TTAA_G Cuts at: 0 1045 3582 Size: 1045 2537 AleI CACnn'nnGTG Cuts at: 0 2071 3582 Size: 2071 1511 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 461 3582 Size: 461 3121 AlwNI CAG_nnn'CTG Cuts at: 0 462 645 3118 3582 Size: 462 183 2473 464 Fragments arranged by size: 2473 464 462 183 ApaI G_GGCC'C Cuts at: 0 3112 3582 Size: 3112 470 ApoI r'AATT_y Cuts at: 0 159 727 838 1015 1162 3582 Size: 159 568 111 177 147 2420 Fragments arranged by size: 2420 568 177 159 147 111 AvaI C'yCGr_G Cuts at: 0 335 1796 3582 Size: 335 1461 1786 Fragments arranged by size: 1786 1461 335 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 73 106 3582 Size: 73 33 3476 Fragments arranged by size: 3476 73 33 BamHI G'GATC_C Cuts at: 0 752 759 3582 Size: 752 7 2823 Fragments arranged by size: 2823 752 7 BanI G'GyrC_C Cuts at: 0 1399 3278 3489 3582 Size: 1399 1879 211 93 Fragments arranged by size: 1879 1399 211 93 BanII G_rGCy'C Cuts at: 0 106 494 2371 3112 3548 3582 Size: 106 388 1877 741 436 34 Fragments arranged by size: 1877 741 436 388 106 34 BbsI GAAGACnn'nnnn_ Cuts at: 0 2200 3378 3582 Size: 2200 1178 204 Fragments arranged by size: 2200 1178 204 BciVI GTATCCnnnnn_n' Cuts at: 0 3571 3582 Size: 3571 11 BfrBI ATG'CAT Cuts at: 0 905 3582 Size: 905 2677 BglI GCCn_nnn'nGGC Cuts at: 0 2783 3134 3582 Size: 2783 351 448 Fragments arranged by size: 2783 448 351 BglII A'GATC_T Cuts at: 0 275 324 1085 3582 Size: 275 49 761 2497 Fragments arranged by size: 2497 761 275 49 BlpI GC'TnA_GC Cuts at: 0 22 2365 2455 3100 3582 Size: 22 2343 90 645 482 Fragments arranged by size: 2343 645 482 90 22 Bme1580I G_kGCm'C Cuts at: 0 1765 3112 3582 Size: 1765 1347 470 Fragments arranged by size: 1765 1347 470 BmrI ACTGGGnnnn_n' Cuts at: 0 1434 2774 3582 Size: 1434 1340 808 Fragments arranged by size: 1434 1340 808 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 525 603 2010 2275 3582 Size: 525 78 1407 265 1307 Fragments arranged by size: 1407 1307 525 265 78 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 508 600 874 931 1815 2026 2245 2506 Size: 508 92 274 57 884 211 219 261 Cuts at: 2506 2527 2922 3328 3444 3562 3582 Size: 21 395 406 116 118 20 Fragments arranged by size: 884 508 406 395 274 261 219 211 118 116 92 57 21 20 Bpu10I CC'TnA_GC Cuts at: 0 592 1888 2585 3582 Size: 592 1296 697 997 Fragments arranged by size: 1296 997 697 592 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1204 1288 2628 3582 Size: 1204 84 1340 954 Fragments arranged by size: 1340 1204 954 84 BsaI GGTCTCn'nnnn_ Cuts at: 0 508 2482 2895 3582 Size: 508 1974 413 687 Fragments arranged by size: 1974 687 508 413 BsaAI yAC'GTr Cuts at: 0 2349 3582 Size: 2349 1233 BsaHI Gr'CG_yC Cuts at: 0 1448 2618 3582 Size: 1448 1170 964 Fragments arranged by size: 1448 1170 964 BsaWI w'CCGG_w Cuts at: 0 762 3582 Size: 762 2820 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 384 414 797 827 1663 1693 1813 1843 Size: 384 30 383 30 836 30 120 30 Cuts at: 1843 3283 3313 3582 Size: 1440 30 269 Fragments arranged by size: 1440 836 384 383 269 120 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 2251 2254 2368 2413 2776 3055 3058 3061 Size: 2251 3 114 45 363 279 3 3 Cuts at: 3061 3064 3067 3262 3307 3310 3582 Size: 3 3 195 45 3 272 Fragments arranged by size: 2251 363 279 272 195 114 45 45 3 3 3 3 3 3 BseYI C'CCAG_C Cuts at: 0 39 254 367 669 2543 2773 2815 2989 Size: 39 215 113 302 1874 230 42 174 Cuts at: 2989 3259 3582 Size: 270 323 Fragments arranged by size: 1874 323 302 270 230 215 174 113 42 39 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 226 448 856 1426 1486 2749 3582 Size: 226 222 408 570 60 1263 833 Fragments arranged by size: 1263 833 570 408 226 222 60 BsiEI CG_ry'CG Cuts at: 0 933 3582 Size: 933 2649 BsiHKAI G_wGCw'C Cuts at: 0 494 2147 3185 3582 Size: 494 1653 1038 397 Fragments arranged by size: 1653 1038 494 397 BsmI GAATG_Cn' Cuts at: 0 361 1534 3413 3582 Size: 361 1173 1879 169 Fragments arranged by size: 1879 1173 361 169 BsmBI CGTCTCn'nnnn_ Cuts at: 0 2710 3582 Size: 2710 872 Bsp1286I G_dGCh'C Cuts at: 0 106 494 1765 2147 2371 3112 3185 3548 Size: 106 388 1271 382 224 741 73 363 Cuts at: 3548 3582 Size: 34 Fragments arranged by size: 1271 741 388 382 363 224 106 73 34 BspEI T'CCGG_A Cuts at: 0 762 3582 Size: 762 2820 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 54 188 713 1289 1452 2009 2031 2487 Size: 54 134 525 576 163 557 22 456 Cuts at: 2487 2850 3582 Size: 363 732 Fragments arranged by size: 732 576 557 525 456 363 163 134 54 22 BsrBI CCG'CTC Cuts at: 0 2589 2936 3087 3582 Size: 2589 347 151 495 Fragments arranged by size: 2589 495 347 151 BsrDI GCAATG_nn' Cuts at: 0 132 1257 3582 Size: 132 1125 2325 Fragments arranged by size: 2325 1125 132 BsrFI r'CCGG_y Cuts at: 0 888 1755 3188 3281 3582 Size: 888 867 1433 93 301 Fragments arranged by size: 1433 888 867 301 93 BstEII G'GTnAC_C Cuts at: 0 66 1665 1785 3582 Size: 66 1599 120 1797 Fragments arranged by size: 1797 1599 120 66 BstXI CCAn_nnnn'nTGG Cuts at: 0 2004 3435 3582 Size: 2004 1431 147 Fragments arranged by size: 2004 1431 147 BstYI r'GATC_y Cuts at: 0 275 324 752 759 1085 3582 Size: 275 49 428 7 326 2497 Fragments arranged by size: 2497 428 326 275 49 7 Bsu36I CC'TnA_GG Cuts at: 0 2449 2977 3582 Size: 2449 528 605 Fragments arranged by size: 2449 605 528 BtgI C'CryG_G Cuts at: 0 221 264 575 809 980 1235 2885 3582 Size: 221 43 311 234 171 255 1650 697 Fragments arranged by size: 1650 697 311 255 234 221 171 43 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 957 3582 Size: 957 2625 BtsI GCAGTG_nn' Cuts at: 0 443 1302 1562 1699 3582 Size: 443 859 260 137 1883 Fragments arranged by size: 1883 859 443 260 137 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 114 149 3582 Size: 114 35 3433 Fragments arranged by size: 3433 114 35 DraIII CAC_nnn'GTG Cuts at: 0 471 879 3582 Size: 471 408 2703 Fragments arranged by size: 2703 471 408 DrdI GACnn_nn'nnGTC Cuts at: 0 1807 2872 3582 Size: 1807 1065 710 Fragments arranged by size: 1807 1065 710 EaeI y'GGCC_r Cuts at: 0 1052 1244 3582 Size: 1052 192 2338 Fragments arranged by size: 2338 1052 192 EarI CTCTTCn'nnn_ Cuts at: 0 234 2050 2713 3023 3379 3582 Size: 234 1816 663 310 356 203 Fragments arranged by size: 1816 663 356 310 234 203 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 676 1087 1873 1965 1999 2199 3582 Size: 676 411 786 92 34 200 1383 Fragments arranged by size: 1383 786 676 411 200 92 34 EcoICRI GAG'CTC Cuts at: 0 492 3582 Size: 492 3090 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 313 508 600 874 931 1102 1815 2026 Size: 313 195 92 274 57 171 713 211 Cuts at: 2026 2212 2245 2506 2527 2680 2922 3328 3444 Size: 186 33 261 21 153 242 406 116 Cuts at: 3444 3562 3582 Size: 118 20 Fragments arranged by size: 713 406 313 274 261 242 211 195 186 171 153 118 116 92 57 33 21 20 EcoNI CCTnn'n_nnAGG Cuts at: 0 649 1099 3582 Size: 649 450 2483 Fragments arranged by size: 2483 649 450 EcoO109I rG'GnC_Cy Cuts at: 0 82 145 480 985 1278 1725 1826 1991 Size: 82 63 335 505 293 447 101 165 Cuts at: 1991 2060 2244 2286 2741 3582 Size: 69 184 42 455 841 Fragments arranged by size: 841 505 455 447 335 293 184 165 101 82 69 63 42 EcoRI G'AATT_C Cuts at: 0 727 838 1162 3582 Size: 727 111 324 2420 Fragments arranged by size: 2420 727 324 111 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 402 3582 Size: 402 3180 HaeII r_GCGC'y Cuts at: 0 1590 3582 Size: 1590 1992 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 260 292 744 776 797 829 1170 1202 Size: 260 32 452 32 21 32 341 32 Cuts at: 1202 1813 1845 2303 2335 3283 3315 3582 Size: 611 32 458 32 948 32 267 Fragments arranged by size: 948 611 458 452 341 267 260 32 32 32 32 32 32 32 21 HincII GTy'rAC Cuts at: 0 816 3582 Size: 816 2766 HindIII A'AGCT_T Cuts at: 0 2182 3582 Size: 2182 1400 KpnI G_GTAC'C Cuts at: 0 3282 3582 Size: 3282 300 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 2021 3386 3582 Size: 2021 1365 196 Fragments arranged by size: 2021 1365 196 MscI TGG'CCA Cuts at: 0 1054 1246 3582 Size: 1054 192 2336 Fragments arranged by size: 2336 1054 192 MslI CAynn'nnrTG Cuts at: 0 448 1234 2071 3582 Size: 448 786 837 1511 Fragments arranged by size: 1511 837 786 448 MspA1I CmG'CkG Cuts at: 0 60 266 486 2330 2505 2738 2750 2815 Size: 60 206 220 1844 175 233 12 65 Cuts at: 2815 2913 3582 Size: 98 669 Fragments arranged by size: 1844 669 233 220 206 175 98 65 60 12 NcoI C'CATG_G Cuts at: 0 221 980 3582 Size: 221 759 2602 Fragments arranged by size: 2602 759 221 NsiI A_TGCA'T Cuts at: 0 907 3582 Size: 907 2675 NspI r_CATG'y Cuts at: 0 2278 2790 3582 Size: 2278 512 792 Fragments arranged by size: 2278 792 512 PasI CC'CwG_GG Cuts at: 0 2466 3582 Size: 2466 1116 PflMI CCAn_nnn'nTGG Cuts at: 0 1758 1782 1935 2550 2721 3582 Size: 1758 24 153 615 171 861 Fragments arranged by size: 1758 861 615 171 153 24 PfoI T'CCnGG_A Cuts at: 0 755 908 1651 3582 Size: 755 153 743 1931 Fragments arranged by size: 1931 755 743 153 PmlI CAC'GTG Cuts at: 0 2349 3582 Size: 2349 1233 PpuMI rG'GwC_Cy Cuts at: 0 82 145 480 985 1278 1725 1826 1991 Size: 82 63 335 505 293 447 101 165 Cuts at: 1991 2060 2741 3582 Size: 69 681 841 Fragments arranged by size: 841 681 505 447 335 293 165 101 82 69 63 PspOMI G'GGCC_C Cuts at: 0 3108 3582 Size: 3108 474 PstI C_TGCA'G Cuts at: 0 440 710 1297 2024 2042 2861 3206 3582 Size: 440 270 587 727 18 819 345 376 Fragments arranged by size: 819 727 587 440 376 345 270 18 PvuII CAG'CTG Cuts at: 0 2505 2750 2913 3582 Size: 2505 245 163 669 Fragments arranged by size: 2505 669 245 163 SacI G_AGCT'C Cuts at: 0 494 3582 Size: 494 3088 SacII CC_GC'GG Cuts at: 0 267 3582 Size: 267 3315 SanDI GG'GwC_CC Cuts at: 0 1725 3582 Size: 1725 1857 SbfI CC_TGCA'GG Cuts at: 0 2861 3582 Size: 2861 721 SfcI C'TryA_G Cuts at: 0 436 706 1293 1671 2020 2038 2745 2857 Size: 436 270 587 378 349 18 707 112 Cuts at: 2857 2919 3202 3582 Size: 62 283 380 Fragments arranged by size: 707 587 436 380 378 349 283 270 112 62 18 SmaI CCC'GGG Cuts at: 0 337 1798 3582 Size: 337 1461 1784 Fragments arranged by size: 1784 1461 337 SmlI C'TyrA_G Cuts at: 0 1045 1219 1267 2607 3582 Size: 1045 174 48 1340 975 Fragments arranged by size: 1340 1045 975 174 48 StyI C'CwwG_G Cuts at: 0 221 980 3142 3582 Size: 221 759 2162 440 Fragments arranged by size: 2162 759 440 221 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 31 268 381 1536 2215 3582 Size: 31 237 113 1155 679 1367 Fragments arranged by size: 1367 1155 679 237 113 31 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 384 416 757 789 969 1001 1552 1584 Size: 384 32 341 32 180 32 551 32 Cuts at: 1584 3582 Size: 1998 Fragments arranged by size: 1998 551 384 341 180 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 0 1069 3582 Size: 1069 2513 XbaI T'CTAG_A Cuts at: 0 3324 3582 Size: 3324 258 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 763 3582 Size: 763 2819 XmaI C'CCGG_G Cuts at: 0 335 1796 3582 Size: 335 1461 1786 Fragments arranged by size: 1786 1461 335 XmnI GAAnn'nnTTC Cuts at: 0 277 795 3582 Size: 277 518 2787 Fragments arranged by size: 2787 518 277 Enzymes that do cut: AarI Acc65I AcuI AflII AleI AlfI AlwNI ApaI ApoI AvaI BaeI BamHI BanI BanII BbsI BciVI BfrBI BglI BglII BlpI Bme1580I BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspMI BsrBI BsrDI BsrFI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI CspCI DraIII DrdI EaeI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI HaeII Hin4I HincII HindIII KpnI MmeI MscI MslI MspA1I NcoI NsiI NspI PasI PflMI PfoI PmlI PpuMI PspOMI PstI PvuII SacI SacII SanDI SbfI SfcI SmaI SmlI StyI TaqII TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AatII AccI AclI AfeI AflIII AgeI AhdI AloI ApaLI AscI AseI AsiSI AvrII BbeI BbvCI BcgI BclI BmgBI BmtI BsaBI BsiWI BspHI BsrGI BssHII BssSI BstAPI BstBI BstZ17I ClaI DraI EagI EcoRV FseI FspI FspAI HpaI KasI MfeI MluI NaeI NarI NdeI NgoMIV NheI NotI NruI PacI PciI PmeI PpiI PshAI PsiI PspXI PsrI PvuI RsrII SalI SapI ScaI SexAI SfiI SfoI SgfI SgrAI SnaBI SpeI SphI SrfI SspI StuI SwaI TatI XhoI ZraI