(Linear) (Six-base) MAPSORT of: KIAA0553.seq Check: 2144 from: 1 to: 4272 KIAA0553.orf With 182 enzymes: SgfI * February 28, 2007 11:20 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 1671 4272 Size: 1671 2601 AccI GT'mk_AC Cuts at: 0 2418 4272 Size: 2418 1854 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 59 292 770 1652 2069 2381 3032 3332 Size: 59 233 478 882 417 312 651 300 Cuts at: 3332 4272 Size: 940 Fragments arranged by size: 940 882 651 478 417 312 300 233 59 AfeI AGC'GCT Cuts at: 0 2485 2623 4272 Size: 2485 138 1649 Fragments arranged by size: 2485 1649 138 AleI CACnn'nnGTG Cuts at: 0 2126 4272 Size: 2126 2146 AlwNI CAG_nnn'CTG Cuts at: 0 430 937 1675 1945 3556 3771 3868 3928 Size: 430 507 738 270 1611 215 97 60 Cuts at: 3928 4189 4245 4272 Size: 261 56 27 Fragments arranged by size: 1611 738 507 430 270 261 215 97 60 56 27 ApaI G_GGCC'C Cuts at: 0 3128 3164 3308 4118 4272 Size: 3128 36 144 810 154 Fragments arranged by size: 3128 810 154 144 36 ApaLI G'TGCA_C Cuts at: 0 389 4272 Size: 389 3883 ApoI r'AATT_y Cuts at: 0 214 520 4272 Size: 214 306 3752 Fragments arranged by size: 3752 306 214 AseI AT'TA_AT Cuts at: 0 1432 4272 Size: 1432 2840 AvaI C'yCGr_G Cuts at: 0 2633 4272 Size: 2633 1639 BamHI G'GATC_C Cuts at: 0 3627 4272 Size: 3627 645 BanI G'GyrC_C Cuts at: 0 56 490 2164 2339 3439 4272 Size: 56 434 1674 175 1100 833 Fragments arranged by size: 1674 1100 833 434 175 56 BanII G_rGCy'C Cuts at: 0 1184 2016 2761 2809 3128 3164 3308 4118 Size: 1184 832 745 48 319 36 144 810 Cuts at: 4118 4272 Size: 154 Fragments arranged by size: 1184 832 810 745 319 154 144 48 36 BbeI G_GCGC'C Cuts at: 0 60 2343 4272 Size: 60 2283 1929 Fragments arranged by size: 2283 1929 60 BbsI GAAGACnn'nnnn_ Cuts at: 0 89 161 857 1739 3020 4272 Size: 89 72 696 882 1281 1252 Fragments arranged by size: 1281 1252 882 696 89 72 BbvCI CC'TCA_GC Cuts at: 0 1205 3656 3801 4098 4272 Size: 1205 2451 145 297 174 Fragments arranged by size: 2451 1205 297 174 145 BclI T'GATC_A Cuts at: 0 240 1239 3417 4272 Size: 240 999 2178 855 Fragments arranged by size: 2178 999 855 240 BglI GCCn_nnn'nGGC Cuts at: 0 685 4272 Size: 685 3587 BglII A'GATC_T Cuts at: 0 267 2852 4272 Size: 267 2585 1420 Fragments arranged by size: 2585 1420 267 BlpI GC'TnA_GC Cuts at: 0 3746 4272 Size: 3746 526 Bme1580I G_kGCm'C Cuts at: 0 393 3128 3164 3308 4118 4272 Size: 393 2735 36 144 810 154 Fragments arranged by size: 2735 810 393 154 144 36 BmrI ACTGGGnnnn_n' Cuts at: 0 1375 2198 2262 2859 3500 3599 3614 4272 Size: 1375 823 64 597 641 99 15 658 Fragments arranged by size: 1375 823 658 641 597 99 64 15 BmtI G_CTAG'C Cuts at: 0 4073 4272 Size: 4073 199 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1314 1878 4272 Size: 1314 564 2394 Fragments arranged by size: 2394 1314 564 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1396 2763 3067 3422 3544 3718 4272 Size: 1396 1367 304 355 122 174 554 Fragments arranged by size: 1396 1367 554 355 304 174 122 Bpu10I CC'TnA_GC Cuts at: 0 1205 3656 3801 4098 4272 Size: 1205 2451 145 297 174 Fragments arranged by size: 2451 1205 297 174 145 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 2000 2310 2361 2610 3118 3613 4272 Size: 2000 310 51 249 508 495 659 Fragments arranged by size: 2000 659 508 495 310 249 51 BsaI GGTCTCn'nnnn_ Cuts at: 0 1270 4272 Size: 1270 3002 BsaHI Gr'CG_yC Cuts at: 0 57 2340 2829 4272 Size: 57 2283 489 1443 Fragments arranged by size: 2283 1443 489 57 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 1217 1247 1968 1998 2673 2703 4272 Size: 1217 30 721 30 675 30 1569 Fragments arranged by size: 1569 1217 721 675 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 1548 2827 2942 3109 3724 4272 Size: 1548 1279 115 167 615 548 Fragments arranged by size: 1548 1279 615 548 167 115 BseYI C'CCAG_C Cuts at: 0 922 960 1326 1753 1935 2027 2043 3121 Size: 922 38 366 427 182 92 16 1078 Cuts at: 3121 3219 3444 3816 3992 4258 4272 Size: 98 225 372 176 266 14 Fragments arranged by size: 1078 922 427 372 366 266 225 182 176 98 92 38 16 14 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 2233 3121 4181 4272 Size: 2233 888 1060 91 Fragments arranged by size: 2233 1060 888 91 BsiHKAI G_wGCw'C Cuts at: 0 393 2016 4272 Size: 393 1623 2256 Fragments arranged by size: 2256 1623 393 BsmI GAATG_Cn' Cuts at: 0 1059 2310 2820 3941 4272 Size: 1059 1251 510 1121 331 Fragments arranged by size: 1251 1121 1059 510 331 Bsp1286I G_dGCh'C Cuts at: 0 393 1184 2016 2761 2809 3128 3164 3308 Size: 393 791 832 745 48 319 36 144 Cuts at: 3308 4118 4272 Size: 810 154 Fragments arranged by size: 832 810 791 745 393 319 154 144 48 36 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1671 4253 4272 Size: 1671 2582 19 Fragments arranged by size: 2582 1671 19 BsrBI CCG'CTC Cuts at: 0 2324 2861 4272 Size: 2324 537 1411 Fragments arranged by size: 2324 1411 537 BsrDI GCAATG_nn' Cuts at: 0 646 4272 Size: 646 3626 BsrFI r'CCGG_y Cuts at: 0 1784 2180 2243 2336 4272 Size: 1784 396 63 93 1936 Fragments arranged by size: 1936 1784 396 93 63 BssSI C'ACGA_G Cuts at: 0 2800 4272 Size: 2800 1472 BstAPI GCAn_nnn'nTGC Cuts at: 0 3928 4189 4272 Size: 3928 261 83 Fragments arranged by size: 3928 261 83 BstXI CCAn_nnnn'nTGG Cuts at: 0 150 579 592 2107 4272 Size: 150 429 13 1515 2165 Fragments arranged by size: 2165 1515 429 150 13 BstYI r'GATC_y Cuts at: 0 267 307 514 1584 2035 2629 2852 3053 Size: 267 40 207 1070 451 594 223 201 Cuts at: 3053 3627 4272 Size: 574 645 Fragments arranged by size: 1070 645 594 574 451 267 223 207 201 40 Bsu36I CC'TnA_GG Cuts at: 0 857 1221 1641 2810 3707 4272 Size: 857 364 420 1169 897 565 Fragments arranged by size: 1169 897 857 565 420 364 BtgI C'CryG_G Cuts at: 0 1716 2106 4171 4263 4272 Size: 1716 390 2065 92 9 Fragments arranged by size: 2065 1716 390 92 9 BtsI GCAGTG_nn' Cuts at: 0 494 548 966 1403 2067 2310 3029 4193 Size: 494 54 418 437 664 243 719 1164 Cuts at: 4193 4272 Size: 79 Fragments arranged by size: 1164 719 664 494 437 418 243 79 54 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 407 442 3050 3085 4146 4181 4272 Size: 407 35 2608 35 1061 35 91 Fragments arranged by size: 2608 1061 407 91 35 35 35 DraI TTT'AAA Cuts at: 0 1494 4272 Size: 1494 2778 DraIII CAC_nnn'GTG Cuts at: 0 3426 4272 Size: 3426 846 EaeI y'GGCC_r Cuts at: 0 1319 1417 2334 3773 4047 4272 Size: 1319 98 917 1439 274 225 Fragments arranged by size: 1439 1319 917 274 225 98 EarI CTCTTCn'nnn_ Cuts at: 0 86 306 769 1305 1847 2045 2151 2282 Size: 86 220 463 536 542 198 106 131 Cuts at: 2282 2400 2779 2979 3245 3269 3293 3383 4272 Size: 118 379 200 266 24 24 90 889 Fragments arranged by size: 889 542 536 463 379 266 220 200 198 131 118 106 90 86 24 24 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 1634 2022 4272 Size: 1634 388 2250 Fragments arranged by size: 2250 1634 388 EcoICRI GAG'CTC Cuts at: 0 2014 4272 Size: 2014 2258 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 59 292 770 1396 1652 2069 2381 2763 Size: 59 233 478 626 256 417 312 382 Cuts at: 2763 3032 3067 3332 3422 3544 3718 4272 Size: 269 35 265 90 122 174 554 Fragments arranged by size: 626 554 478 417 382 312 269 265 256 233 174 122 90 59 35 EcoNI CCTnn'n_nnAGG Cuts at: 0 1667 4272 Size: 1667 2605 EcoO109I rG'GnC_Cy Cuts at: 0 541 641 743 869 1351 1954 2902 3138 Size: 541 100 102 126 482 603 948 236 Cuts at: 3138 3304 3305 3471 3553 4115 4242 4272 Size: 166 1 166 82 562 127 30 Fragments arranged by size: 948 603 562 541 482 236 166 166 127 126 102 100 82 30 1 EcoRI G'AATT_C Cuts at: 0 520 4272 Size: 520 3752 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 1236 2149 4272 Size: 1236 913 2123 Fragments arranged by size: 2123 1236 913 HaeII r_GCGC'y Cuts at: 0 60 2343 2487 2625 4272 Size: 60 2283 144 138 1647 Fragments arranged by size: 2283 1647 144 138 60 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 810 842 853 885 1968 2000 2221 2253 Size: 810 32 11 32 1083 32 221 32 Cuts at: 2253 3007 3039 3382 3414 4272 Size: 754 32 343 32 858 Fragments arranged by size: 1083 858 810 754 343 221 32 32 32 32 32 32 11 HincII GTy'rAC Cuts at: 0 123 3644 4272 Size: 123 3521 628 Fragments arranged by size: 3521 628 123 KasI G'GCGC_C Cuts at: 0 56 2339 4272 Size: 56 2283 1933 Fragments arranged by size: 2283 1933 56 MfeI C'AATT_G Cuts at: 0 137 4272 Size: 137 4135 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 1319 4272 Size: 1319 2953 MscI TGG'CCA Cuts at: 0 1321 1419 3775 4049 4272 Size: 1321 98 2356 274 223 Fragments arranged by size: 2356 1321 274 223 98 MslI CAynn'nnrTG Cuts at: 0 19 2126 4272 Size: 19 2107 2146 Fragments arranged by size: 2146 2107 19 MspA1I CmG'CkG Cuts at: 0 2031 2047 2708 3805 3925 4189 4272 Size: 2031 16 661 1097 120 264 83 Fragments arranged by size: 2031 1097 661 264 120 83 16 NaeI GCC'GGC Cuts at: 0 2338 4272 Size: 2338 1934 NarI GG'CG_CC Cuts at: 0 57 2340 4272 Size: 57 2283 1932 Fragments arranged by size: 2283 1932 57 NcoI C'CATG_G Cuts at: 0 1716 2106 4263 4272 Size: 1716 390 2157 9 Fragments arranged by size: 2157 1716 390 9 NgoMIV G'CCGG_C Cuts at: 0 2336 4272 Size: 2336 1936 NheI G'CTAG_C Cuts at: 0 4069 4272 Size: 4069 203 NspI r_CATG'y Cuts at: 0 3898 4144 4272 Size: 3898 246 128 Fragments arranged by size: 3898 246 128 PasI CC'CwG_GG Cuts at: 0 1972 3310 3466 4272 Size: 1972 1338 156 806 Fragments arranged by size: 1972 1338 806 156 PflMI CCAn_nnn'nTGG Cuts at: 0 360 3181 4272 Size: 360 2821 1091 Fragments arranged by size: 2821 1091 360 PfoI T'CCnGG_A Cuts at: 0 2779 4272 Size: 2779 1493 PpuMI rG'GwC_Cy Cuts at: 0 641 743 869 1351 1954 2902 3138 3471 Size: 641 102 126 482 603 948 236 333 Cuts at: 3471 4242 4272 Size: 771 30 Fragments arranged by size: 948 771 641 603 482 333 236 126 102 30 PshAI GACnn'nnGTC Cuts at: 0 3005 4272 Size: 3005 1267 PspOMI G'GGCC_C Cuts at: 0 3124 3160 3304 4114 4272 Size: 3124 36 144 810 158 Fragments arranged by size: 3124 810 158 144 36 PstI C_TGCA'G Cuts at: 0 555 797 3007 4185 4272 Size: 555 242 2210 1178 87 Fragments arranged by size: 2210 1178 555 242 87 PvuII CAG'CTG Cuts at: 0 2047 2708 3805 3925 4189 4272 Size: 2047 661 1097 120 264 83 Fragments arranged by size: 2047 1097 661 264 120 83 SacI G_AGCT'C Cuts at: 0 2016 4272 Size: 2016 2256 SanDI GG'GwC_CC Cuts at: 0 641 869 3471 4272 Size: 641 228 2602 801 Fragments arranged by size: 2602 801 641 228 SapI GCTCTTCn'nnn_ Cuts at: 0 86 2151 3269 4272 Size: 86 2065 1118 1003 Fragments arranged by size: 2065 1118 1003 86 SfcI C'TryA_G Cuts at: 0 431 551 793 929 1680 2412 2445 2454 Size: 431 120 242 136 751 732 33 9 Cuts at: 2454 2568 2727 3003 3578 3860 4181 4272 Size: 114 159 276 575 282 321 91 Fragments arranged by size: 751 732 575 431 321 282 276 242 159 136 120 114 91 33 9 SfoI GGC'GCC Cuts at: 0 58 2341 4272 Size: 58 2283 1931 Fragments arranged by size: 2283 1931 58 SmaI CCC'GGG Cuts at: 0 2635 4272 Size: 2635 1637 SmlI C'TyrA_G Cuts at: 0 2015 2325 2376 2625 3133 3592 4272 Size: 2015 310 51 249 508 459 680 Fragments arranged by size: 2015 680 508 459 310 249 51 SphI G_CATG'C Cuts at: 0 3898 4272 Size: 3898 374 SspI AAT'ATT Cuts at: 0 2548 4272 Size: 2548 1724 StuI AGG'CCT Cuts at: 0 1219 1580 3790 4272 Size: 1219 361 2210 482 Fragments arranged by size: 2210 1219 482 361 StyI C'CwwG_G Cuts at: 0 149 606 786 1119 1442 1575 1716 2106 Size: 149 457 180 333 323 133 141 390 Cuts at: 2106 4263 4272 Size: 2157 9 Fragments arranged by size: 2157 457 390 333 323 180 149 141 133 9 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 1061 1192 4226 4272 Size: 1061 131 3034 46 Fragments arranged by size: 3034 1061 131 46 TatI w'GTAC_w Cuts at: 0 107 555 2270 3722 4272 Size: 107 448 1715 1452 550 Fragments arranged by size: 1715 1452 550 448 107 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 1798 1830 3069 3101 4272 Size: 1798 32 1239 32 1171 Fragments arranged by size: 1798 1239 1171 32 32 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 1020 2107 2206 3042 4272 Size: 1020 1087 99 836 1230 Fragments arranged by size: 1230 1087 1020 836 99 XmaI C'CCGG_G Cuts at: 0 2633 4272 Size: 2633 1639 Enzymes that do cut: AarI AccI AcuI AfeI AleI AlwNI ApaI ApaLI ApoI AseI AvaI BamHI BanI BanII BbeI BbsI BbvCI BclI BglI BglII BlpI Bme1580I BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaHI BsaXI BseRI BseYI BsgI BsiHKAI BsmI Bsp1286I BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstXI BstYI Bsu36I BtgI BtsI CspCI DraI DraIII EaeI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI HaeII Hin4I HincII KasI MfeI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NheI NspI PasI PflMI PfoI PpuMI PshAI PspOMI PstI PvuII SacI SanDI SapI SfcI SfoI SmaI SmlI SphI SspI StuI StyI TaqII TatI TstI XcmI XmaI Enzymes that do not cut: AatII Acc65I AclI AflII AflIII AgeI AhdI AlfI AloI AscI AsiSI AvrII BaeI BcgI BciVI BfrBI BmgBI BsaAI BsaBI BsaWI BsiEI BsiWI BsmBI BspEI BspHI BsrGI BssHII BstBI BstEII BstZ17I BtgZI ClaI DrdI EagI EcoRV FseI FspI FspAI HindIII HpaI KpnI MluI NdeI NotI NruI NsiI PacI PciI PmeI PmlI PpiI PsiI PspXI PsrI PvuI RsrII SacII SalI SbfI ScaI SexAI SfiI SgfI SgrAI SnaBI SpeI SrfI SwaI Tth111I XbaI XhoI XmnI ZraI