(Linear) (Six-base) MAPSORT of: KIAA0802.seq Check: 8784 from: 1 to: 4635 KIAA0802.orf With 182 enzymes: SgfI * October 24, 2006 15:07 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 839 1584 3490 3575 4635 Size: 839 745 1906 85 1060 Fragments arranged by size: 1906 1060 839 745 85 AatII G_ACGT'C Cuts at: 0 1276 4108 4635 Size: 1276 2832 527 Fragments arranged by size: 2832 1276 527 AccI GT'mk_AC Cuts at: 0 3482 4635 Size: 3482 1153 Acc65I G'GTAC_C Cuts at: 0 3341 4635 Size: 3341 1294 AclI AA'CG_TT Cuts at: 0 2798 4635 Size: 2798 1837 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 640 1033 1354 1860 2929 3890 4635 Size: 640 393 321 506 1069 961 745 Fragments arranged by size: 1069 961 745 640 506 393 321 AfeI AGC'GCT Cuts at: 0 1102 4635 Size: 1102 3533 AflII C'TTAA_G Cuts at: 0 235 4635 Size: 235 4400 AhdI GACnn_n'nnGTC Cuts at: 0 1728 4635 Size: 1728 2907 AleI CACnn'nnGTG Cuts at: 0 2198 3251 4414 4635 Size: 2198 1053 1163 221 Fragments arranged by size: 2198 1163 1053 221 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1922 2435 4635 Size: 1922 513 2200 Fragments arranged by size: 2200 1922 513 AlwNI CAG_nnn'CTG Cuts at: 0 1533 2331 2869 3411 4635 Size: 1533 798 538 542 1224 Fragments arranged by size: 1533 1224 798 542 538 ApaI G_GGCC'C Cuts at: 0 596 751 996 1720 4152 4318 4538 4592 Size: 596 155 245 724 2432 166 220 54 Cuts at: 4592 4635 Size: 43 Fragments arranged by size: 2432 724 596 245 220 166 155 54 43 ApaLI G'TGCA_C Cuts at: 0 2563 4180 4635 Size: 2563 1617 455 Fragments arranged by size: 2563 1617 455 ApoI r'AATT_y Cuts at: 0 2713 4635 Size: 2713 1922 AseI AT'TA_AT Cuts at: 0 4193 4635 Size: 4193 442 AvaI C'yCGr_G Cuts at: 0 380 605 750 941 1145 1340 1679 1762 Size: 380 225 145 191 204 195 339 83 Cuts at: 1762 1772 2146 2246 3001 3543 3614 4343 4539 Size: 10 374 100 755 542 71 729 196 Cuts at: 4539 4635 Size: 96 Fragments arranged by size: 755 729 542 380 374 339 225 204 196 195 191 145 100 96 83 71 10 BamHI G'GATC_C Cuts at: 0 4472 4635 Size: 4472 163 BanI G'GyrC_C Cuts at: 0 437 979 3341 3638 4333 4635 Size: 437 542 2362 297 695 302 Fragments arranged by size: 2362 695 542 437 302 297 BanII G_rGCy'C Cuts at: 0 530 596 751 821 917 996 1043 1331 Size: 530 66 155 70 96 79 47 288 Cuts at: 1331 1526 1720 2009 3544 4152 4177 4301 4318 Size: 195 194 289 1535 608 25 124 17 Cuts at: 4318 4538 4592 4635 Size: 220 54 43 Fragments arranged by size: 1535 608 530 289 288 220 195 194 155 124 96 79 70 66 54 47 43 25 17 BbeI G_GCGC'C Cuts at: 0 3642 4635 Size: 3642 993 BbsI GAAGACnn'nnnn_ Cuts at: 0 100 893 1276 2497 2894 4635 Size: 100 793 383 1221 397 1741 Fragments arranged by size: 1741 1221 793 397 383 100 BbvCI CC'TCA_GC Cuts at: 0 266 4635 Size: 266 4369 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 37 71 1150 1184 4635 Size: 37 34 1079 34 3451 Fragments arranged by size: 3451 1079 37 34 34 BclI T'GATC_A Cuts at: 0 2781 4635 Size: 2781 1854 BglI GCCn_nnn'nGGC Cuts at: 0 954 1487 2347 4635 Size: 954 533 860 2288 Fragments arranged by size: 2288 954 860 533 BlpI GC'TnA_GC Cuts at: 0 916 1042 3580 4290 4635 Size: 916 126 2538 710 345 Fragments arranged by size: 2538 916 710 345 126 Bme1580I G_kGCm'C Cuts at: 0 596 751 996 1137 1720 2397 2567 3305 Size: 596 155 245 141 583 677 170 738 Cuts at: 3305 3636 4152 4184 4318 4411 4538 4592 4635 Size: 331 516 32 134 93 127 54 43 Fragments arranged by size: 738 677 596 583 516 331 245 170 155 141 134 127 93 54 43 32 BmgBI CAC'GTC Cuts at: 0 2445 3423 4635 Size: 2445 978 1212 Fragments arranged by size: 2445 1212 978 BmrI ACTGGGnnnn_n' Cuts at: 0 1133 4635 Size: 1133 3502 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1266 2154 4635 Size: 1266 888 2481 Fragments arranged by size: 2481 1266 888 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 202 313 361 430 514 538 703 823 Size: 202 111 48 69 84 24 165 120 Cuts at: 823 1468 1609 1771 1903 1995 2124 2377 3167 Size: 645 141 162 132 92 129 253 790 Cuts at: 3167 3551 3718 4191 4635 Size: 384 167 473 444 Fragments arranged by size: 790 645 473 444 384 253 202 167 165 162 141 132 129 120 111 92 84 69 48 24 Bpu10I CC'TnA_GC Cuts at: 0 266 4635 Size: 266 4369 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 688 1932 2446 3178 3735 4635 Size: 688 1244 514 732 557 900 Fragments arranged by size: 1244 900 732 688 557 514 BsaI GGTCTCn'nnnn_ Cuts at: 0 2125 4289 4549 4635 Size: 2125 2164 260 86 Fragments arranged by size: 2164 2125 260 86 BsaHI Gr'CG_yC Cuts at: 0 1273 3639 4105 4635 Size: 1273 2366 466 530 Fragments arranged by size: 2366 1273 530 466 BsaWI w'CCGG_w Cuts at: 0 863 2009 4635 Size: 863 1146 2626 Fragments arranged by size: 2626 1146 863 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 311 341 1000 1030 1246 1276 1996 2026 Size: 311 30 659 30 216 30 720 30 Cuts at: 2026 4635 Size: 2609 Fragments arranged by size: 2609 720 659 311 216 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 658 1021 1210 1270 1510 1906 1909 2107 Size: 658 363 189 60 240 396 3 198 Cuts at: 2107 2119 2511 3220 3324 4525 4530 4635 Size: 12 392 709 104 1201 5 105 Fragments arranged by size: 1201 709 658 396 392 363 240 198 189 105 104 60 12 5 3 BseYI C'CCAG_C Cuts at: 0 598 769 1211 1382 1526 1533 1713 1857 Size: 598 171 442 171 144 7 180 144 Cuts at: 1857 3221 3928 4311 4566 4635 Size: 1364 707 383 255 69 Fragments arranged by size: 1364 707 598 442 383 255 180 171 171 144 144 69 7 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1804 2272 2882 3673 4027 4264 4407 4635 Size: 1804 468 610 791 354 237 143 228 Fragments arranged by size: 1804 791 610 468 354 237 228 143 BsiEI CG_ry'CG Cuts at: 0 2670 2896 4635 Size: 2670 226 1739 Fragments arranged by size: 2670 1739 226 BsiHKAI G_wGCw'C Cuts at: 0 530 821 917 1043 1058 1331 1901 2009 Size: 530 291 96 126 15 273 570 108 Cuts at: 2009 2234 2462 2567 2929 3395 4184 4635 Size: 225 228 105 362 466 789 451 Fragments arranged by size: 789 570 530 466 451 362 291 273 228 225 126 108 105 96 15 BsmI GAATG_Cn' Cuts at: 0 773 3759 4635 Size: 773 2986 876 Fragments arranged by size: 2986 876 773 BsmBI CGTCTCn'nnnn_ Cuts at: 0 139 3959 4635 Size: 139 3820 676 Fragments arranged by size: 3820 676 139 Bsp1286I G_dGCh'C Cuts at: 0 530 596 751 821 917 996 1043 1058 Size: 530 66 155 70 96 79 47 15 Cuts at: 1058 1137 1331 1526 1720 1901 2009 2234 2397 Size: 79 194 195 194 181 108 225 163 Cuts at: 2397 2462 2567 2929 3305 3395 3544 3636 4152 Size: 65 105 362 376 90 149 92 516 Cuts at: 4152 4177 4184 4301 4318 4411 4538 4592 4635 Size: 25 7 117 17 93 127 54 43 Fragments arranged by size: 530 516 376 362 225 195 194 194 181 163 155 149 127 117 108 105 96 93 92 90 79 79 70 66 65 54 47 43 25 17 15 7 BspEI T'CCGG_A Cuts at: 0 863 4635 Size: 863 3772 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 839 1584 1879 2615 3490 3575 4635 Size: 839 745 295 736 875 85 1060 Fragments arranged by size: 1060 875 839 745 736 295 85 BsrBI CCG'CTC Cuts at: 0 741 1289 1395 1500 1785 2700 4154 4635 Size: 741 548 106 105 285 915 1454 481 Fragments arranged by size: 1454 915 741 548 481 285 106 105 BsrFI r'CCGG_y Cuts at: 0 896 1767 2891 4273 4635 Size: 896 871 1124 1382 362 Fragments arranged by size: 1382 1124 896 871 362 BsrGI T'GTAC_A Cuts at: 0 389 4635 Size: 389 4246 BssHII G'CGCG_C Cuts at: 0 255 4635 Size: 255 4380 BssSI C'ACGA_G Cuts at: 0 910 1069 1375 3304 4635 Size: 910 159 306 1929 1331 Fragments arranged by size: 1929 1331 910 306 159 BstAPI GCAn_nnn'nTGC Cuts at: 0 3411 4031 4635 Size: 3411 620 604 Fragments arranged by size: 3411 620 604 BstBI TT'CG_AA Cuts at: 0 174 4635 Size: 174 4461 BstEII G'GTnAC_C Cuts at: 0 2170 4635 Size: 2170 2465 BstXI CCAn_nnnn'nTGG Cuts at: 0 660 2182 3253 3811 3855 4371 4635 Size: 660 1522 1071 558 44 516 264 Fragments arranged by size: 1522 1071 660 558 516 264 44 BstYI r'GATC_y Cuts at: 0 2618 4472 4635 Size: 2618 1854 163 Fragments arranged by size: 2618 1854 163 Bsu36I CC'TnA_GG Cuts at: 0 3029 3970 4635 Size: 3029 941 665 Fragments arranged by size: 3029 941 665 BtgI C'CryG_G Cuts at: 0 575 696 1322 1851 2285 3368 4238 4530 Size: 575 121 626 529 434 1083 870 292 Cuts at: 4530 4592 4635 Size: 62 43 Fragments arranged by size: 1083 870 626 575 529 434 292 121 62 43 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 1169 4635 Size: 1169 3466 BtsI GCAGTG_nn' Cuts at: 0 3393 3409 3685 4635 Size: 3393 16 276 950 Fragments arranged by size: 3393 950 276 16 DrdI GACnn_nn'nnGTC Cuts at: 0 1674 3813 4635 Size: 1674 2139 822 Fragments arranged by size: 2139 1674 822 EaeI y'GGCC_r Cuts at: 0 488 2846 2893 2930 4635 Size: 488 2358 47 37 1705 Fragments arranged by size: 2358 1705 488 47 37 EagI C'GGCC_G Cuts at: 0 2893 4635 Size: 2893 1742 EarI CTCTTCn'nnn_ Cuts at: 0 839 1487 2041 2480 2975 4219 4635 Size: 839 648 554 439 495 1244 416 Fragments arranged by size: 1244 839 648 554 495 439 416 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 811 2194 4635 Size: 811 1383 2441 Fragments arranged by size: 2441 1383 811 EcoICRI GAG'CTC Cuts at: 0 528 819 915 1041 1329 2007 4635 Size: 528 291 96 126 288 678 2628 Fragments arranged by size: 2628 678 528 291 288 126 96 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 202 313 361 430 514 538 640 703 Size: 202 111 48 69 84 24 102 63 Cuts at: 703 823 1033 1354 1468 1609 1771 1860 1903 Size: 120 210 321 114 141 162 89 43 Cuts at: 1903 1995 2124 2377 2929 3167 3551 3718 3890 Size: 92 129 253 552 238 384 167 172 Cuts at: 3890 4191 4635 Size: 301 444 Fragments arranged by size: 552 444 384 321 301 253 238 210 202 172 167 162 141 129 120 114 111 102 92 89 84 69 63 48 43 24 EcoNI CCTnn'n_nnAGG Cuts at: 0 184 1003 1591 1705 3028 3603 4635 Size: 184 819 588 114 1323 575 1032 Fragments arranged by size: 1323 1032 819 588 575 184 114 EcoO109I rG'GnC_Cy Cuts at: 0 324 593 747 992 993 1228 1474 2540 Size: 324 269 154 245 1 235 246 1066 Cuts at: 2540 3135 3511 3562 3815 3830 4248 4535 4588 Size: 595 376 51 253 15 418 287 53 Cuts at: 4588 4635 Size: 47 Fragments arranged by size: 1066 595 418 376 324 287 269 253 246 245 235 154 53 51 47 15 1 EcoRI G'AATT_C Cuts at: 0 2713 4635 Size: 2713 1922 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 423 2559 2733 3073 4443 4635 Size: 423 2136 174 340 1370 192 Fragments arranged by size: 2136 1370 423 340 192 174 FseI GG_CCGG'CC Cuts at: 0 1771 4635 Size: 1771 2864 FspI TGC'GCA Cuts at: 0 478 3475 4635 Size: 478 2997 1160 Fragments arranged by size: 2997 1160 478 HaeII r_GCGC'y Cuts at: 0 1104 1410 2342 3642 4635 Size: 1104 306 932 1300 993 Fragments arranged by size: 1300 1104 993 932 306 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 1000 1032 1258 1290 1603 1635 1714 1746 Size: 1000 32 226 32 313 32 79 32 Cuts at: 1746 1996 2028 2247 2279 2857 2889 2911 2943 Size: 250 32 219 32 578 32 22 32 Cuts at: 2943 2944 2976 4189 4221 4546 4578 4635 Size: 1 32 1213 32 325 32 57 Fragments arranged by size: 1213 1000 578 325 313 250 226 219 79 57 32 32 32 32 32 32 32 32 32 32 32 22 1 HincII GTy'rAC Cuts at: 0 3483 4635 Size: 3483 1152 KasI G'GCGC_C Cuts at: 0 3638 4635 Size: 3638 997 KpnI G_GTAC'C Cuts at: 0 3345 4635 Size: 3345 1290 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 312 1115 2897 4635 Size: 312 803 1782 1738 Fragments arranged by size: 1782 1738 803 312 MscI TGG'CCA Cuts at: 0 490 2848 4635 Size: 490 2358 1787 Fragments arranged by size: 2358 1787 490 MslI CAynn'nnrTG Cuts at: 0 1904 2198 3251 3853 4369 4414 4635 Size: 1904 294 1053 602 516 45 221 Fragments arranged by size: 1904 1053 602 516 294 221 45 MspA1I CmG'CkG Cuts at: 0 45 1046 1386 1530 1749 2287 2331 2481 Size: 45 1001 340 144 219 538 44 150 Cuts at: 2481 2527 2898 3887 4635 Size: 46 371 989 748 Fragments arranged by size: 1001 989 748 538 371 340 219 150 144 46 45 44 NaeI GCC'GGC Cuts at: 0 1769 4275 4635 Size: 1769 2506 360 Fragments arranged by size: 2506 1769 360 NarI GG'CG_CC Cuts at: 0 3639 4635 Size: 3639 996 NcoI C'CATG_G Cuts at: 0 4592 4635 Size: 4592 43 NgoMIV G'CCGG_C Cuts at: 0 1767 4273 4635 Size: 1767 2506 362 Fragments arranged by size: 2506 1767 362 NspI r_CATG'y Cuts at: 0 726 2835 4031 4501 4635 Size: 726 2109 1196 470 134 Fragments arranged by size: 2109 1196 726 470 134 PasI CC'CwG_GG Cuts at: 0 3669 4625 4635 Size: 3669 956 10 Fragments arranged by size: 3669 956 10 PflMI CCAn_nnn'nTGG Cuts at: 0 1533 1857 3928 4566 4635 Size: 1533 324 2071 638 69 Fragments arranged by size: 2071 1533 638 324 69 PfoI T'CCnGG_A Cuts at: 0 1586 3817 3961 4635 Size: 1586 2231 144 674 Fragments arranged by size: 2231 1586 674 144 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2995 3027 3563 3595 4635 Size: 2995 32 536 32 1040 Fragments arranged by size: 2995 1040 536 32 32 PpuMI rG'GwC_Cy Cuts at: 0 3511 3815 3830 4248 4635 Size: 3511 304 15 418 387 Fragments arranged by size: 3511 418 387 304 15 PspOMI G'GGCC_C Cuts at: 0 592 747 992 1716 4148 4314 4534 4588 Size: 592 155 245 724 2432 166 220 54 Cuts at: 4588 4635 Size: 47 Fragments arranged by size: 2432 724 592 245 220 166 155 54 47 PstI C_TGCA'G Cuts at: 0 50 101 836 1004 1031 1067 1580 2282 Size: 50 51 735 168 27 36 513 702 Cuts at: 2282 2411 4064 4635 Size: 129 1653 571 Fragments arranged by size: 1653 735 702 571 513 168 129 51 50 36 27 PvuII CAG'CTG Cuts at: 0 45 1530 1749 2331 2481 4635 Size: 45 1485 219 582 150 2154 Fragments arranged by size: 2154 1485 582 219 150 45 SacI G_AGCT'C Cuts at: 0 530 821 917 1043 1331 2009 4635 Size: 530 291 96 126 288 678 2626 Fragments arranged by size: 2626 678 530 291 288 126 96 SacII CC_GC'GG Cuts at: 0 2288 4635 Size: 2288 2347 SalI G'TCGA_C Cuts at: 0 3481 4635 Size: 3481 1154 SanDI GG'GwC_CC Cuts at: 0 3511 3815 3830 4635 Size: 3511 304 15 805 Fragments arranged by size: 3511 805 304 15 SapI GCTCTTCn'nnn_ Cuts at: 0 2975 4635 Size: 2975 1660 SbfI CC_TGCA'GG Cuts at: 0 1004 4635 Size: 1004 3631 SfcI C'TryA_G Cuts at: 0 46 97 832 1000 1027 1063 1576 2278 Size: 46 51 735 168 27 36 513 702 Cuts at: 2278 2407 4060 4635 Size: 129 1653 575 Fragments arranged by size: 1653 735 702 575 513 168 129 51 46 36 27 SfoI GGC'GCC Cuts at: 0 3640 4635 Size: 3640 995 SmaI CCC'GGG Cuts at: 0 607 752 943 1147 1342 1681 2248 3545 Size: 607 145 191 204 195 339 567 1297 Cuts at: 3545 3616 4541 4635 Size: 71 925 94 Fragments arranged by size: 1297 925 607 567 339 204 195 191 145 94 71 SmlI C'TyrA_G Cuts at: 0 235 703 1911 2461 3193 3714 4635 Size: 235 468 1208 550 732 521 921 Fragments arranged by size: 1208 921 732 550 521 468 235 SphI G_CATG'C Cuts at: 0 2835 4635 Size: 2835 1800 StuI AGG'CCT Cuts at: 0 1582 2350 4635 Size: 1582 768 2285 Fragments arranged by size: 2285 1582 768 StyI C'CwwG_G Cuts at: 0 3554 4592 4635 Size: 3554 1038 43 Fragments arranged by size: 3554 1038 43 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 783 2219 3249 3298 4271 4635 Size: 783 1436 1030 49 973 364 Fragments arranged by size: 1436 1030 973 783 364 49 TatI w'GTAC_w Cuts at: 0 389 536 3197 4635 Size: 389 147 2661 1438 Fragments arranged by size: 2661 1438 389 147 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 2434 2466 2704 2736 4635 Size: 2434 32 238 32 1899 Fragments arranged by size: 2434 1899 238 32 32 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 1698 2849 4635 Size: 1698 1151 1786 Fragments arranged by size: 1786 1698 1151 XmaI C'CCGG_G Cuts at: 0 605 750 941 1145 1340 1679 2246 3543 Size: 605 145 191 204 195 339 567 1297 Cuts at: 3543 3614 4539 4635 Size: 71 925 96 Fragments arranged by size: 1297 925 605 567 339 204 195 191 145 96 71 XmnI GAAnn'nnTTC Cuts at: 0 1561 2029 2713 4635 Size: 1561 468 684 1922 Fragments arranged by size: 1922 1561 684 468 ZraI GAC'GTC Cuts at: 0 1274 4106 4635 Size: 1274 2832 529 Fragments arranged by size: 2832 1274 529 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflII AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BclI BglI BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspMI BsrBI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FseI FspI HaeII Hin4I HincII KasI KpnI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PflMI PfoI PpiI PpuMI PspOMI PstI PvuII SacI SacII SalI SanDI SapI SbfI SfcI SfoI SmaI SmlI SphI StuI StyI TaqII TatI TstI XcmI XmaI XmnI ZraI Enzymes that do not cut: AflIII AgeI AloI AscI AsiSI AvrII BaeI BciVI BfrBI BglII BmtI BsaAI BsaBI BsiWI BspHI BsrDI BstZ17I ClaI CspCI DraI DraIII EcoRV FspAI HindIII HpaI MfeI MluI NdeI NheI NotI NruI NsiI PacI PciI PmeI PmlI PshAI PsiI PspXI PsrI PvuI RsrII ScaI SexAI SfiI SgfI SgrAI SnaBI SpeI SrfI SspI SwaI Tth111I XbaI XhoI