(Linear) (Six-base) MAPSORT of: KIAA1032.seq Check: 4148 from: 1 to: 5109 KIAA1032.orf With 182 enzymes: SgfI * July 15, 2010 18:27 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 4842 5109 Size: 4842 267 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 422 1034 3272 3850 3860 3877 4132 4144 Size: 422 612 2238 578 10 17 255 12 Cuts at: 4144 5109 Size: 965 Fragments arranged by size: 2238 965 612 578 422 255 17 12 10 AfeI AGC'GCT Cuts at: 0 2794 3249 5109 Size: 2794 455 1860 Fragments arranged by size: 2794 1860 455 AflIII A'CryG_T Cuts at: 0 62 2339 2747 5109 Size: 62 2277 408 2362 Fragments arranged by size: 2362 2277 408 62 AhdI GACnn_n'nnGTC Cuts at: 0 1329 2010 3141 5109 Size: 1329 681 1131 1968 Fragments arranged by size: 1968 1329 1131 681 AleI CACnn'nnGTG Cuts at: 0 67 220 2405 2746 4424 5109 Size: 67 153 2185 341 1678 685 Fragments arranged by size: 2185 1678 685 341 153 67 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 461 1835 2233 5109 Size: 461 1374 398 2876 Fragments arranged by size: 2876 1374 461 398 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 133 165 3790 3822 5109 Size: 133 32 3625 32 1287 Fragments arranged by size: 3625 1287 133 32 32 AlwNI CAG_nnn'CTG Cuts at: 0 1791 3228 3456 4007 4624 5109 Size: 1791 1437 228 551 617 485 Fragments arranged by size: 1791 1437 617 551 485 228 ApaI G_GGCC'C Cuts at: 0 277 3119 4727 5109 Size: 277 2842 1608 382 Fragments arranged by size: 2842 1608 382 277 ApaLI G'TGCA_C Cuts at: 0 1647 5109 Size: 1647 3462 ApoI r'AATT_y Cuts at: 0 55 2175 3189 5109 Size: 55 2120 1014 1920 Fragments arranged by size: 2120 1920 1014 55 AvaI C'yCGr_G Cuts at: 0 704 1394 1915 2969 3479 3616 4834 5109 Size: 704 690 521 1054 510 137 1218 275 Fragments arranged by size: 1218 1054 704 690 521 510 275 137 BamHI G'GATC_C Cuts at: 0 236 2083 5109 Size: 236 1847 3026 Fragments arranged by size: 3026 1847 236 BanI G'GyrC_C Cuts at: 0 43 334 1050 1170 1230 2386 2676 3496 Size: 43 291 716 120 60 1156 290 820 Cuts at: 3496 5092 5109 Size: 1596 17 Fragments arranged by size: 1596 1156 820 716 291 290 120 60 43 17 BanII G_rGCy'C Cuts at: 0 277 703 868 1106 1834 1931 2965 3119 Size: 277 426 165 238 728 97 1034 154 Cuts at: 3119 3899 4465 4727 4785 5109 Size: 780 566 262 58 324 Fragments arranged by size: 1034 780 728 566 426 324 277 262 238 165 154 97 58 BbsI GAAGACnn'nnnn_ Cuts at: 0 1091 1621 2125 3188 3567 4108 4450 4577 Size: 1091 530 504 1063 379 541 342 127 Cuts at: 4577 5109 Size: 532 Fragments arranged by size: 1091 1063 541 532 530 504 379 342 127 BbvCI CC'TCA_GC Cuts at: 0 763 5109 Size: 763 4346 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 87 121 2682 2716 5109 Size: 87 34 2561 34 2393 Fragments arranged by size: 2561 2393 87 34 34 BglI GCCn_nnn'nGGC Cuts at: 0 863 1168 1201 1445 5109 Size: 863 305 33 244 3664 Fragments arranged by size: 3664 863 305 244 33 BglII A'GATC_T Cuts at: 0 326 1919 1940 5109 Size: 326 1593 21 3169 Fragments arranged by size: 3169 1593 326 21 BlpI GC'TnA_GC Cuts at: 0 805 826 1100 1241 1259 2323 3898 4732 Size: 805 21 274 141 18 1064 1575 834 Cuts at: 4732 4816 5109 Size: 84 293 Fragments arranged by size: 1575 1064 834 805 293 274 141 84 21 18 Bme1580I G_kGCm'C Cuts at: 0 48 229 277 1651 2671 3119 3501 3647 Size: 48 181 48 1374 1020 448 382 146 Cuts at: 3647 3755 3985 4727 5109 Size: 108 230 742 382 Fragments arranged by size: 1374 1020 742 448 382 382 230 181 146 108 48 48 BmgBI CAC'GTC Cuts at: 0 2012 2340 2496 5109 Size: 2012 328 156 2613 Fragments arranged by size: 2613 2012 328 156 BmrI ACTGGGnnnn_n' Cuts at: 0 429 1159 4634 5109 Size: 429 730 3475 475 Fragments arranged by size: 3475 730 475 429 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 762 1848 5109 Size: 762 1086 3261 Fragments arranged by size: 3261 1086 762 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 299 454 991 1003 1015 1051 1554 2872 Size: 299 155 537 12 12 36 503 1318 Cuts at: 2872 2941 3523 3673 3817 4474 5109 Size: 69 582 150 144 657 635 Fragments arranged by size: 1318 657 635 582 537 503 299 155 150 144 69 36 12 12 Bpu10I CC'TnA_GC Cuts at: 0 763 3967 5109 Size: 763 3204 1142 Fragments arranged by size: 3204 1142 763 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1864 4233 4309 4423 4654 5044 5109 Size: 1864 2369 76 114 231 390 65 Fragments arranged by size: 2369 1864 390 231 114 76 65 BsaI GGTCTCn'nnnn_ Cuts at: 0 208 1456 5109 Size: 208 1248 3653 Fragments arranged by size: 3653 1248 208 BsaAI yAC'GTr Cuts at: 0 65 69 5109 Size: 65 4 5040 Fragments arranged by size: 5040 65 4 BsaBI GATnn'nnATC Cuts at: 0 2035 5109 Size: 2035 3074 BsaHI Gr'CG_yC Cuts at: 0 1654 2609 5109 Size: 1654 955 2500 Fragments arranged by size: 2500 1654 955 BsaWI w'CCGG_w Cuts at: 0 1853 2852 5109 Size: 1853 999 2257 Fragments arranged by size: 2257 1853 999 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 706 736 880 910 2185 2215 2939 2969 Size: 706 30 144 30 1275 30 724 30 Cuts at: 2969 3691 3706 3721 3736 3790 3820 5059 5089 Size: 722 15 15 15 54 30 1239 30 Cuts at: 5089 5109 Size: 20 Fragments arranged by size: 1275 1239 724 722 706 144 54 30 30 30 30 30 30 20 15 15 15 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 283 421 754 988 1012 1015 1018 1036 Size: 283 138 333 234 24 3 3 18 Cuts at: 1036 1039 1048 1051 1054 1057 1060 1291 1603 Size: 3 9 3 3 3 3 231 312 Cuts at: 1603 2185 2440 2643 3313 3484 3676 5098 5109 Size: 582 255 203 670 171 192 1422 11 Fragments arranged by size: 1422 670 582 333 312 283 255 234 231 203 192 171 138 24 18 11 9 3 3 3 3 3 3 3 BseYI C'CCAG_C Cuts at: 0 127 131 508 542 947 1076 2865 3118 Size: 127 4 377 34 405 129 1789 253 Cuts at: 3118 4305 4727 4778 4931 5109 Size: 1187 422 51 153 178 Fragments arranged by size: 1789 1187 422 405 377 253 178 153 129 127 51 34 4 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 103 596 1734 2518 3475 5109 Size: 103 493 1138 784 957 1634 Fragments arranged by size: 1634 1138 957 784 493 103 BsiEI CG_ry'CG Cuts at: 0 2208 2763 4699 4968 5109 Size: 2208 555 1936 269 141 Fragments arranged by size: 2208 1936 555 269 141 BsiHKAI G_wGCw'C Cuts at: 0 100 854 1651 1834 1880 1931 2695 3305 Size: 100 754 797 183 46 51 764 610 Cuts at: 3305 3686 3899 5109 Size: 381 213 1210 Fragments arranged by size: 1210 797 764 754 610 381 213 183 100 51 46 BsiWI C'GTAC_G Cuts at: 0 65 5109 Size: 65 5044 BsmI GAATG_Cn' Cuts at: 0 3758 5109 Size: 3758 1351 Bsp1286I G_dGCh'C Cuts at: 0 48 100 229 277 703 854 868 1106 Size: 48 52 129 48 426 151 14 238 Cuts at: 1106 1651 1834 1880 1931 2671 2695 2965 3119 Size: 545 183 46 51 740 24 270 154 Cuts at: 3119 3305 3501 3647 3686 3755 3899 3985 4465 Size: 186 196 146 39 69 144 86 480 Cuts at: 4465 4727 4785 5109 Size: 262 58 324 Fragments arranged by size: 740 545 480 426 324 270 262 238 196 186 183 154 151 146 144 129 86 69 58 52 51 48 48 46 39 24 14 BspHI T'CATG_A Cuts at: 0 2687 3764 5109 Size: 2687 1077 1345 Fragments arranged by size: 2687 1345 1077 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1799 4067 4478 4526 4842 5109 Size: 1799 2268 411 48 316 267 Fragments arranged by size: 2268 1799 411 316 267 48 BsrBI CCG'CTC Cuts at: 0 885 4962 5109 Size: 885 4077 147 Fragments arranged by size: 4077 885 147 BsrDI GCAATG_nn' Cuts at: 0 3996 5109 Size: 3996 1113 BsrGI T'GTAC_A Cuts at: 0 3053 4536 5109 Size: 3053 1483 573 Fragments arranged by size: 3053 1483 573 BssHII G'CGCG_C Cuts at: 0 4879 5109 Size: 4879 230 BssSI C'ACGA_G Cuts at: 0 1504 1644 1774 5109 Size: 1504 140 130 3335 Fragments arranged by size: 3335 1504 140 130 BstAPI GCAn_nnn'nTGC Cuts at: 0 518 858 1743 1748 1757 1998 4479 5109 Size: 518 340 885 5 9 241 2481 630 Fragments arranged by size: 2481 885 630 518 340 241 9 5 BstBI TT'CG_AA Cuts at: 0 1667 3809 5109 Size: 1667 2142 1300 Fragments arranged by size: 2142 1667 1300 BstEII G'GTnAC_C Cuts at: 0 1950 5109 Size: 1950 3159 BstXI CCAn_nnnn'nTGG Cuts at: 0 432 1527 2982 4305 4426 5109 Size: 432 1095 1455 1323 121 683 Fragments arranged by size: 1455 1323 1095 683 432 121 BstYI r'GATC_y Cuts at: 0 236 326 1247 1895 1919 1940 2083 2519 Size: 236 90 921 648 24 21 143 436 Cuts at: 2519 5109 Size: 2590 Fragments arranged by size: 2590 921 648 436 236 143 90 24 21 Bsu36I CC'TnA_GG Cuts at: 0 1253 5109 Size: 1253 3856 BtgI C'CryG_G Cuts at: 0 770 2042 3293 3563 3815 4154 5109 Size: 770 1272 1251 270 252 339 955 Fragments arranged by size: 1272 1251 955 770 339 270 252 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 90 1713 5109 Size: 90 1623 3396 Fragments arranged by size: 3396 1623 90 BtsI GCAGTG_nn' Cuts at: 0 584 612 4378 5109 Size: 584 28 3766 731 Fragments arranged by size: 3766 731 584 28 DraIII CAC_nnn'GTG Cuts at: 0 233 1757 2487 5109 Size: 233 1524 730 2622 Fragments arranged by size: 2622 1524 730 233 DrdI GACnn_nn'nnGTC Cuts at: 0 304 2098 5109 Size: 304 1794 3011 Fragments arranged by size: 3011 1794 304 EaeI y'GGCC_r Cuts at: 0 1193 1517 1679 3080 4696 4904 4965 5039 Size: 1193 324 162 1401 1616 208 61 74 Cuts at: 5039 5109 Size: 70 Fragments arranged by size: 1616 1401 1193 324 208 162 74 70 61 EagI C'GGCC_G Cuts at: 0 4696 4965 5109 Size: 4696 269 144 Fragments arranged by size: 4696 269 144 EarI CTCTTCn'nnn_ Cuts at: 0 398 798 959 1822 3932 4453 5109 Size: 398 400 161 863 2110 521 656 Fragments arranged by size: 2110 863 656 521 400 398 161 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 244 1861 2013 5067 5109 Size: 244 1617 152 3054 42 Fragments arranged by size: 3054 1617 244 152 42 EcoICRI GAG'CTC Cuts at: 0 1832 1929 3897 5109 Size: 1832 97 1968 1212 Fragments arranged by size: 1968 1832 1212 97 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 299 422 454 991 1003 1015 1034 1051 Size: 299 123 32 537 12 12 19 17 Cuts at: 1051 1554 2872 2941 3272 3523 3673 3817 3850 Size: 503 1318 69 331 251 150 144 33 Cuts at: 3850 3860 3877 4132 4144 4474 5109 Size: 10 17 255 12 330 635 Fragments arranged by size: 1318 635 537 503 331 330 299 255 251 150 144 123 69 33 32 19 17 17 12 12 12 10 EcoNI CCTnn'n_nnAGG Cuts at: 0 997 3970 5109 Size: 997 2973 1139 Fragments arranged by size: 2973 1139 997 EcoO109I rG'GnC_Cy Cuts at: 0 273 274 342 978 1161 1182 1788 2892 Size: 273 1 68 636 183 21 606 1104 Cuts at: 2892 3115 4724 4831 5109 Size: 223 1609 107 278 Fragments arranged by size: 1609 1104 636 606 278 273 223 183 107 68 21 1 EcoRI G'AATT_C Cuts at: 0 3189 5109 Size: 3189 1920 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 3025 4464 5109 Size: 3025 1439 645 Fragments arranged by size: 3025 1439 645 HaeII r_GCGC'y Cuts at: 0 2796 3251 3660 4823 4946 5109 Size: 2796 455 409 1163 123 163 Fragments arranged by size: 2796 1163 455 409 163 123 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 147 179 880 912 1315 1347 1996 2028 Size: 147 32 701 32 403 32 649 32 Cuts at: 2028 2233 2265 2884 2916 3127 3159 3249 3281 Size: 205 32 619 32 211 32 90 32 Cuts at: 3281 3460 3492 3562 3594 3691 3706 3723 3738 Size: 179 32 70 32 97 15 17 15 Cuts at: 3738 4459 4491 5059 5091 5109 Size: 721 32 568 32 18 Fragments arranged by size: 721 701 649 619 568 403 211 205 179 147 97 90 70 32 32 32 32 32 32 32 32 32 32 32 32 18 17 15 15 HincII GTy'rAC Cuts at: 0 4713 5109 Size: 4713 396 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 893 2228 2783 2801 5045 5109 Size: 893 1335 555 18 2244 64 Fragments arranged by size: 2244 1335 893 555 64 18 MscI TGG'CCA Cuts at: 0 1195 1519 5041 5109 Size: 1195 324 3522 68 Fragments arranged by size: 3522 1195 324 68 MslI CAynn'nnrTG Cuts at: 0 67 109 220 560 1870 1873 2041 2215 Size: 67 42 111 340 1310 3 168 174 Cuts at: 2215 2311 2405 2407 2746 3763 4424 4978 5109 Size: 96 94 2 339 1017 661 554 131 Fragments arranged by size: 1310 1017 661 554 340 339 174 168 131 111 96 94 67 42 3 2 MspA1I CmG'CkG Cuts at: 0 131 825 1138 1240 1383 1815 2327 2817 Size: 131 694 313 102 143 432 512 490 Cuts at: 2817 3795 4314 4917 5109 Size: 978 519 603 192 Fragments arranged by size: 978 694 603 519 512 490 432 313 192 143 131 102 NcoI C'CATG_G Cuts at: 0 3293 3815 4154 5109 Size: 3293 522 339 955 Fragments arranged by size: 3293 955 522 339 NruI TCG'CGA Cuts at: 0 1732 5109 Size: 1732 3377 NspI r_CATG'y Cuts at: 0 1473 1746 3547 5109 Size: 1473 273 1801 1562 Fragments arranged by size: 1801 1562 1473 273 PasI CC'CwG_GG Cuts at: 0 696 1144 1441 2055 2671 4554 5109 Size: 696 448 297 614 616 1883 555 Fragments arranged by size: 1883 696 616 614 555 448 297 PflMI CCAn_nnn'nTGG Cuts at: 0 3456 4560 4624 5109 Size: 3456 1104 64 485 Fragments arranged by size: 3456 1104 485 64 PfoI T'CCnGG_A Cuts at: 0 365 992 1537 1898 1934 2807 2888 4451 Size: 365 627 545 361 36 873 81 1563 Cuts at: 4451 4617 5109 Size: 166 492 Fragments arranged by size: 1563 873 627 545 492 365 361 166 81 36 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2461 2493 3790 3822 5109 Size: 2461 32 1297 32 1287 Fragments arranged by size: 2461 1297 1287 32 32 PpuMI rG'GwC_Cy Cuts at: 0 342 978 1788 2892 4831 5109 Size: 342 636 810 1104 1939 278 Fragments arranged by size: 1939 1104 810 636 342 278 PshAI GACnn'nnGTC Cuts at: 0 4829 5109 Size: 4829 280 PspOMI G'GGCC_C Cuts at: 0 273 3115 4723 5109 Size: 273 2842 1608 386 Fragments arranged by size: 2842 1608 386 273 PspXI vC'TCGA_Gb Cuts at: 0 3616 5109 Size: 3616 1493 PstI C_TGCA'G Cuts at: 0 863 1239 1388 1814 4012 4853 4916 5109 Size: 863 376 149 426 2198 841 63 193 Fragments arranged by size: 2198 863 841 426 376 193 149 63 PvuII CAG'CTG Cuts at: 0 131 825 1138 1240 1383 2817 3795 4314 Size: 131 694 313 102 143 1434 978 519 Cuts at: 4314 4917 5109 Size: 603 192 Fragments arranged by size: 1434 978 694 603 519 313 192 143 131 102 SacI G_AGCT'C Cuts at: 0 1834 1931 3899 5109 Size: 1834 97 1968 1210 Fragments arranged by size: 1968 1834 1210 97 SanDI GG'GwC_CC Cuts at: 0 4831 5109 Size: 4831 278 SapI GCTCTTCn'nnn_ Cuts at: 0 959 1822 4453 5109 Size: 959 863 2631 656 Fragments arranged by size: 2631 959 863 656 SbfI CC_TGCA'GG Cuts at: 0 863 5109 Size: 863 4246 SfcI C'TryA_G Cuts at: 0 714 859 1235 1384 1810 4008 4849 4912 Size: 714 145 376 149 426 2198 841 63 Cuts at: 4912 5109 Size: 197 Fragments arranged by size: 2198 841 714 426 376 197 149 145 63 SfiI GGCCn_nnn'nGGCC Cuts at: 0 1201 5109 Size: 1201 3908 SmaI CCC'GGG Cuts at: 0 706 1396 3481 5109 Size: 706 690 2085 1628 Fragments arranged by size: 2085 1628 706 690 SmlI C'TyrA_G Cuts at: 0 1879 3616 4212 4324 4438 4669 5059 5109 Size: 1879 1737 596 112 114 231 390 50 Fragments arranged by size: 1879 1737 596 390 231 114 112 50 SphI G_CATG'C Cuts at: 0 1473 1746 3547 5109 Size: 1473 273 1801 1562 Fragments arranged by size: 1801 1562 1473 273 SspI AAT'ATT Cuts at: 0 469 676 4414 5109 Size: 469 207 3738 695 Fragments arranged by size: 3738 695 469 207 StyI C'CwwG_G Cuts at: 0 338 1196 1268 1340 1562 2531 3293 3710 Size: 338 858 72 72 222 969 762 417 Cuts at: 3710 3734 3815 4154 4298 5042 5109 Size: 24 81 339 144 744 67 Fragments arranged by size: 969 858 762 744 417 339 338 222 144 81 72 72 67 24 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 909 1188 1281 2506 3946 4552 4570 5109 Size: 909 279 93 1225 1440 606 18 539 Fragments arranged by size: 1440 1225 909 606 539 279 93 18 TatI w'GTAC_w Cuts at: 0 2453 3026 3053 4536 4790 5109 Size: 2453 573 27 1483 254 319 Fragments arranged by size: 2453 1483 573 319 254 27 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 167 199 2185 2217 5109 Size: 167 32 1986 32 2892 Fragments arranged by size: 2892 1986 167 32 32 XhoI C'TCGA_G Cuts at: 0 3616 5109 Size: 3616 1493 XmaI C'CCGG_G Cuts at: 0 704 1394 3479 5109 Size: 704 690 2085 1630 Fragments arranged by size: 2085 1630 704 690 XmnI GAAnn'nnTTC Cuts at: 0 2476 2860 3805 4447 5109 Size: 2476 384 945 642 662 Fragments arranged by size: 2476 945 662 642 384 Enzymes that do cut: AarI AcuI AfeI AflIII AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AvaI BamHI BanI BanII BbsI BbvCI BcgI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI Bsp1286I BspHI BspMI BsrBI BsrDI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI HaeII Hin4I HincII MmeI MscI MslI MspA1I NcoI NruI NspI PasI PflMI PfoI PpiI PpuMI PshAI PspOMI PspXI PstI PvuII SacI SanDI SapI SbfI SfcI SfiI SmaI SmlI SphI SspI StyI TaqII TatI TstI XhoI XmaI XmnI Enzymes that do not cut: AatII AccI Acc65I AclI AflII AgeI AscI AseI AsiSI AvrII BaeI BbeI BciVI BclI BfrBI BmtI BsmBI BspEI BsrFI BstZ17I ClaI CspCI DraI EcoRV FseI FspI FspAI HindIII HpaI KasI KpnI MfeI MluI NaeI NarI NdeI NgoMIV NheI NotI NsiI PacI PciI PmeI PmlI PsiI PsrI PvuI RsrII SacII SalI ScaI SexAI SfoI SgfI SgrAI SnaBI SpeI SrfI StuI SwaI Tth111I XbaI XcmI ZraI