(Linear) (Six-base) MAPSORT of: KIAA1244.seq Check: 2238 from: 1 to: 5517 KIAA1244.orf With 182 enzymes: SgfI * October 24, 2006 15:15 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 1287 3975 5517 Size: 1287 2688 1542 Fragments arranged by size: 2688 1542 1287 AatII G_ACGT'C Cuts at: 0 2804 5517 Size: 2804 2713 AccI GT'mk_AC Cuts at: 0 656 725 5517 Size: 656 69 4792 Fragments arranged by size: 4792 656 69 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 388 994 1243 1697 2055 2437 3247 3691 Size: 388 606 249 454 358 382 810 444 Cuts at: 3691 3876 4375 4387 4942 5161 5208 5517 Size: 185 499 12 555 219 47 309 Fragments arranged by size: 810 606 555 499 454 444 388 382 358 309 249 219 185 47 12 AfeI AGC'GCT Cuts at: 0 2133 5517 Size: 2133 3384 AflIII A'CryG_T Cuts at: 0 863 2022 2024 2655 5517 Size: 863 1159 2 631 2862 Fragments arranged by size: 2862 1159 863 631 2 AgeI A'CCGG_T Cuts at: 0 935 3328 5517 Size: 935 2393 2189 Fragments arranged by size: 2393 2189 935 AhdI GACnn_n'nnGTC Cuts at: 0 876 5517 Size: 876 4641 AleI CACnn'nnGTG Cuts at: 0 1879 5517 Size: 1879 3638 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1109 5517 Size: 1109 4408 AlwNI CAG_nnn'CTG Cuts at: 0 1023 1167 1905 2229 3176 3376 5517 Size: 1023 144 738 324 947 200 2141 Fragments arranged by size: 2141 1023 947 738 324 200 144 ApaI G_GGCC'C Cuts at: 0 3775 5517 Size: 3775 1742 AvaI C'yCGr_G Cuts at: 0 532 559 849 917 2152 2173 4348 4599 Size: 532 27 290 68 1235 21 2175 251 Cuts at: 4599 4892 5236 5517 Size: 293 344 281 Fragments arranged by size: 2175 1235 532 344 293 290 281 251 68 27 21 AvrII C'CTAG_G Cuts at: 0 927 5517 Size: 927 4590 BamHI G'GATC_C Cuts at: 0 4977 5517 Size: 4977 540 BanI G'GyrC_C Cuts at: 0 289 1266 2050 2080 4390 5517 Size: 289 977 784 30 2310 1127 Fragments arranged by size: 2310 1127 977 784 289 30 BanII G_rGCy'C Cuts at: 0 103 305 1352 1648 2167 3132 3775 5287 Size: 103 202 1047 296 519 965 643 1512 Cuts at: 5287 5517 Size: 230 Fragments arranged by size: 1512 1047 965 643 519 296 230 202 103 BbeI G_GCGC'C Cuts at: 0 1270 4394 5517 Size: 1270 3124 1123 Fragments arranged by size: 3124 1270 1123 BbsI GAAGACnn'nnnn_ Cuts at: 0 1317 3264 4571 5517 Size: 1317 1947 1307 946 Fragments arranged by size: 1947 1317 1307 946 BbvCI CC'TCA_GC Cuts at: 0 1153 1791 1975 2554 5517 Size: 1153 638 184 579 2963 Fragments arranged by size: 2963 1153 638 579 184 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1710 1744 4215 4249 5517 Size: 1710 34 2471 34 1268 Fragments arranged by size: 2471 1710 1268 34 34 BclI T'GATC_A Cuts at: 0 819 3656 5517 Size: 819 2837 1861 Fragments arranged by size: 2837 1861 819 BfrBI ATG'CAT Cuts at: 0 230 5517 Size: 230 5287 BglI GCCn_nnn'nGGC Cuts at: 0 1807 3703 4249 5517 Size: 1807 1896 546 1268 Fragments arranged by size: 1896 1807 1268 546 BlpI GC'TnA_GC Cuts at: 0 304 628 1756 4645 5517 Size: 304 324 1128 2889 872 Fragments arranged by size: 2889 1128 872 324 304 Bme1580I G_kGCm'C Cuts at: 0 294 2053 2892 3117 3775 3816 4632 5517 Size: 294 1759 839 225 658 41 816 885 Fragments arranged by size: 1759 885 839 816 658 294 225 41 BmgBI CAC'GTC Cuts at: 0 864 1953 5517 Size: 864 1089 3564 Fragments arranged by size: 3564 1089 864 BmrI ACTGGGnnnn_n' Cuts at: 0 1856 3088 3558 3999 5155 5517 Size: 1856 1232 470 441 1156 362 Fragments arranged by size: 1856 1232 1156 470 441 362 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 55 1781 5517 Size: 55 1726 3736 Fragments arranged by size: 3736 1726 55 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1927 2008 2077 2625 2957 3379 3711 4144 Size: 1927 81 69 548 332 422 332 433 Cuts at: 4144 4232 4771 5383 5517 Size: 88 539 612 134 Fragments arranged by size: 1927 612 548 539 433 422 332 332 134 88 81 69 Bpu10I CC'TnA_GC Cuts at: 0 1110 1153 1791 1975 2203 2554 4915 5268 Size: 1110 43 638 184 228 351 2361 353 Cuts at: 5268 5517 Size: 249 Fragments arranged by size: 2361 1110 638 353 351 249 228 184 43 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 342 379 577 2489 3826 5517 Size: 342 37 198 1912 1337 1691 Fragments arranged by size: 1912 1691 1337 342 198 37 BsaI GGTCTCn'nnnn_ Cuts at: 0 2868 5517 Size: 2868 2649 BsaAI yAC'GTr Cuts at: 0 2025 2046 2592 5442 5517 Size: 2025 21 546 2850 75 Fragments arranged by size: 2850 2025 546 75 21 BsaHI Gr'CG_yC Cuts at: 0 1267 1712 2801 4391 5517 Size: 1267 445 1089 1590 1126 Fragments arranged by size: 1590 1267 1126 1089 445 BsaWI w'CCGG_w Cuts at: 0 935 3328 5517 Size: 935 2393 2189 Fragments arranged by size: 2393 2189 935 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 1494 1524 5517 Size: 1494 30 3993 Fragments arranged by size: 3993 1494 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 184 376 495 1024 1081 1204 1360 3484 Size: 184 192 119 529 57 123 156 2124 Cuts at: 3484 3802 3924 4780 5517 Size: 318 122 856 737 Fragments arranged by size: 2124 856 737 529 318 192 184 156 123 122 119 57 BseYI C'CCAG_C Cuts at: 0 53 130 285 3117 3861 3980 4541 4954 Size: 53 77 155 2832 744 119 561 413 Cuts at: 4954 4981 5186 5481 5517 Size: 27 205 295 36 Fragments arranged by size: 2832 744 561 413 295 205 155 119 77 53 36 27 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 261 694 1181 1321 1924 1945 4681 5517 Size: 261 433 487 140 603 21 2736 836 Fragments arranged by size: 2736 836 603 487 433 261 140 21 BsiEI CG_ry'CG Cuts at: 0 1258 4487 5517 Size: 1258 3229 1030 Fragments arranged by size: 3229 1258 1030 BsiHKAI G_wGCw'C Cuts at: 0 14 305 1352 1367 1648 2063 2180 2209 Size: 14 291 1047 15 281 415 117 29 Cuts at: 2209 2330 3614 4012 4901 5287 5517 Size: 121 1284 398 889 386 230 Fragments arranged by size: 1284 1047 889 415 398 386 291 281 230 121 117 29 15 14 BsmI GAATG_Cn' Cuts at: 0 2550 5013 5217 5517 Size: 2550 2463 204 300 Fragments arranged by size: 2550 2463 300 204 BsmBI CGTCTCn'nnnn_ Cuts at: 0 115 616 5300 5517 Size: 115 501 4684 217 Fragments arranged by size: 4684 501 217 115 Bsp1286I G_dGCh'C Cuts at: 0 14 103 294 305 1352 1367 1648 2053 Size: 14 89 191 11 1047 15 281 405 Cuts at: 2053 2063 2167 2180 2209 2330 2892 3117 3132 Size: 10 104 13 29 121 562 225 15 Cuts at: 3132 3614 3775 3816 4012 4632 4901 5287 5517 Size: 482 161 41 196 620 269 386 230 Fragments arranged by size: 1047 620 562 482 405 386 281 269 230 225 196 191 161 121 104 89 41 29 15 15 14 13 11 10 BspHI T'CATG_A Cuts at: 0 1289 2297 5517 Size: 1289 1008 3220 Fragments arranged by size: 3220 1289 1008 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 845 1287 3866 3975 4310 4949 5517 Size: 845 442 2579 109 335 639 568 Fragments arranged by size: 2579 845 639 568 442 335 109 BsrBI CCG'CTC Cuts at: 0 1081 1707 2303 5267 5517 Size: 1081 626 596 2964 250 Fragments arranged by size: 2964 1081 626 596 250 BsrDI GCAATG_nn' Cuts at: 0 2486 5517 Size: 2486 3031 BsrFI r'CCGG_y Cuts at: 0 935 3244 3328 4927 5517 Size: 935 2309 84 1599 590 Fragments arranged by size: 2309 1599 935 590 84 BstAPI GCAn_nnn'nTGC Cuts at: 0 345 5517 Size: 345 5172 BstXI CCAn_nnnn'nTGG Cuts at: 0 1656 5517 Size: 1656 3861 BstYI r'GATC_y Cuts at: 0 189 748 2858 4977 5321 5517 Size: 189 559 2110 2119 344 196 Fragments arranged by size: 2119 2110 559 344 196 189 Bsu36I CC'TnA_GG Cuts at: 0 3169 5517 Size: 3169 2348 BtgI C'CryG_G Cuts at: 0 398 460 1233 2283 2954 3391 3974 5030 Size: 398 62 773 1050 671 437 583 1056 Cuts at: 5030 5517 Size: 487 Fragments arranged by size: 1056 1050 773 671 583 487 437 398 62 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 2090 2411 4432 5517 Size: 2090 321 2021 1085 Fragments arranged by size: 2090 2021 1085 321 BtsI GCAGTG_nn' Cuts at: 0 1200 1473 1943 3288 3488 4552 5414 5517 Size: 1200 273 470 1345 200 1064 862 103 Fragments arranged by size: 1345 1200 1064 862 470 273 200 103 ClaI AT'CG_AT Cuts at: 0 1604 5517 Size: 1604 3913 DraIII CAC_nnn'GTG Cuts at: 0 33 63 461 2628 4007 5517 Size: 33 30 398 2167 1379 1510 Fragments arranged by size: 2167 1510 1379 398 33 30 DrdI GACnn_nn'nnGTC Cuts at: 0 2815 5517 Size: 2815 2702 EaeI y'GGCC_r Cuts at: 0 1255 1479 2017 2315 3191 3704 4484 5517 Size: 1255 224 538 298 876 513 780 1033 Fragments arranged by size: 1255 1033 876 780 538 513 298 224 EagI C'GGCC_G Cuts at: 0 1255 4484 5517 Size: 1255 3229 1033 Fragments arranged by size: 3229 1255 1033 EarI CTCTTCn'nnn_ Cuts at: 0 899 1835 2758 4181 4609 5517 Size: 899 936 923 1423 428 908 Fragments arranged by size: 1423 936 923 908 899 428 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 1003 2524 3511 5517 Size: 1003 1521 987 2006 Fragments arranged by size: 2006 1521 1003 987 EcoICRI GAG'CTC Cuts at: 0 303 1350 1646 5285 5517 Size: 303 1047 296 3639 232 Fragments arranged by size: 3639 1047 303 296 232 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 388 994 1243 1697 1927 2008 2055 2077 Size: 388 606 249 454 230 81 47 22 Cuts at: 2077 2437 2625 2957 3247 3379 3691 3711 3876 Size: 360 188 332 290 132 312 20 165 Cuts at: 3876 4144 4232 4375 4387 4771 4942 5161 5208 Size: 268 88 143 12 384 171 219 47 Cuts at: 5208 5383 5517 Size: 175 134 Fragments arranged by size: 606 454 388 384 360 332 312 290 268 249 230 219 188 175 171 165 143 134 132 88 81 47 47 22 20 12 EcoNI CCTnn'n_nnAGG Cuts at: 0 2629 4510 5517 Size: 2629 1881 1007 Fragments arranged by size: 2629 1881 1007 EcoO109I rG'GnC_Cy Cuts at: 0 127 740 2148 2241 3675 3772 3855 4201 Size: 127 613 1408 93 1434 97 83 346 Cuts at: 4201 4503 4938 5149 5233 5261 5517 Size: 302 435 211 84 28 256 Fragments arranged by size: 1434 1408 613 435 346 302 256 211 127 97 93 84 83 28 EcoRV GAT'ATC Cuts at: 0 3639 5517 Size: 3639 1878 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 109 3696 4130 5517 Size: 109 3587 434 1387 Fragments arranged by size: 3587 1387 434 109 HaeII r_GCGC'y Cuts at: 0 1004 1270 2135 2199 2522 3177 4394 5517 Size: 1004 266 865 64 323 655 1217 1123 Fragments arranged by size: 1217 1123 1004 865 655 323 266 64 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 315 347 811 843 862 894 1110 1142 Size: 315 32 464 32 19 32 216 32 Cuts at: 1142 1597 1629 2068 2100 3544 3576 3814 3846 Size: 455 32 439 32 1444 32 238 32 Cuts at: 3846 5517 Size: 1671 Fragments arranged by size: 1671 1444 464 455 439 315 238 216 32 32 32 32 32 32 32 32 19 HindIII A'AGCT_T Cuts at: 0 248 2993 3621 5517 Size: 248 2745 628 1896 Fragments arranged by size: 2745 1896 628 248 KasI G'GCGC_C Cuts at: 0 1266 4390 5517 Size: 1266 3124 1127 Fragments arranged by size: 3124 1266 1127 MfeI C'AATT_G Cuts at: 0 3384 5517 Size: 3384 2133 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 860 884 2300 2781 5517 Size: 860 24 1416 481 2736 Fragments arranged by size: 2736 1416 860 481 24 MscI TGG'CCA Cuts at: 0 1481 2019 3193 3706 5517 Size: 1481 538 1174 513 1811 Fragments arranged by size: 1811 1481 1174 538 513 MslI CAynn'nnrTG Cuts at: 0 1435 1720 1879 2741 4273 4735 5512 5517 Size: 1435 285 159 862 1532 462 777 5 Fragments arranged by size: 1532 1435 862 777 462 285 159 5 MspA1I CmG'CkG Cuts at: 0 425 432 1195 1310 1485 1813 2285 2415 Size: 425 7 763 115 175 328 472 130 Cuts at: 2415 2781 3366 3373 3769 3878 3896 5172 5430 Size: 366 585 7 396 109 18 1276 258 Cuts at: 5430 5517 Size: 87 Fragments arranged by size: 1276 763 585 472 425 396 366 328 258 175 130 115 109 87 18 7 7 NaeI GCC'GGC Cuts at: 0 3246 5517 Size: 3246 2271 NarI GG'CG_CC Cuts at: 0 1267 4391 5517 Size: 1267 3124 1126 Fragments arranged by size: 3124 1267 1126 NcoI C'CATG_G Cuts at: 0 398 2954 3974 5030 5517 Size: 398 2556 1020 1056 487 Fragments arranged by size: 2556 1056 1020 487 398 NgoMIV G'CCGG_C Cuts at: 0 3244 5517 Size: 3244 2273 NsiI A_TGCA'T Cuts at: 0 232 5517 Size: 232 5285 NspI r_CATG'y Cuts at: 0 230 1380 2659 5517 Size: 230 1150 1279 2858 Fragments arranged by size: 2858 1279 1150 230 PasI CC'CwG_GG Cuts at: 0 5153 5517 Size: 5153 364 PciI A'CATG_T Cuts at: 0 2655 5517 Size: 2655 2862 PflMI CCAn_nnn'nTGG Cuts at: 0 1488 1627 3469 4446 5517 Size: 1488 139 1842 977 1071 Fragments arranged by size: 1842 1488 1071 977 139 PfoI T'CCnGG_A Cuts at: 0 2237 2249 4209 5517 Size: 2237 12 1960 1308 Fragments arranged by size: 2237 1960 1308 12 PmlI CAC'GTG Cuts at: 0 2025 2592 5442 5517 Size: 2025 567 2850 75 Fragments arranged by size: 2850 2025 567 75 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1081 1113 5517 Size: 1081 32 4404 Fragments arranged by size: 4404 1081 32 PpuMI rG'GwC_Cy Cuts at: 0 127 740 2148 2241 3675 3855 4503 4938 Size: 127 613 1408 93 1434 180 648 435 Cuts at: 4938 5149 5517 Size: 211 368 Fragments arranged by size: 1434 1408 648 613 435 368 211 180 127 93 PshAI GACnn'nnGTC Cuts at: 0 2658 2701 3329 5517 Size: 2658 43 628 2188 Fragments arranged by size: 2658 2188 628 43 PspOMI G'GGCC_C Cuts at: 0 3771 5517 Size: 3771 1746 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 5008 5040 5517 Size: 5008 32 477 Fragments arranged by size: 5008 477 32 PstI C_TGCA'G Cuts at: 0 733 1088 5517 Size: 733 355 4429 Fragments arranged by size: 4429 733 355 PvuII CAG'CTG Cuts at: 0 1195 1485 1813 2415 2781 3366 5430 5517 Size: 1195 290 328 602 366 585 2064 87 Fragments arranged by size: 2064 1195 602 585 366 328 290 87 SacI G_AGCT'C Cuts at: 0 305 1352 1648 5287 5517 Size: 305 1047 296 3639 230 Fragments arranged by size: 3639 1047 305 296 230 SacII CC_GC'GG Cuts at: 0 2286 5517 Size: 2286 3231 SanDI GG'GwC_CC Cuts at: 0 2148 5149 5517 Size: 2148 3001 368 Fragments arranged by size: 3001 2148 368 SapI GCTCTTCn'nnn_ Cuts at: 0 899 5517 Size: 899 4618 ScaI AGT'ACT Cuts at: 0 826 3958 5517 Size: 826 3132 1559 Fragments arranged by size: 3132 1559 826 SexAI A'CCwGG_T Cuts at: 0 2624 2810 2936 5517 Size: 2624 186 126 2581 Fragments arranged by size: 2624 2581 186 126 SfcI C'TryA_G Cuts at: 0 729 1084 1245 1502 5517 Size: 729 355 161 257 4015 Fragments arranged by size: 4015 729 355 257 161 SfoI GGC'GCC Cuts at: 0 1268 4392 5517 Size: 1268 3124 1125 Fragments arranged by size: 3124 1268 1125 SmaI CCC'GGG Cuts at: 0 919 4350 4894 5517 Size: 919 3431 544 623 Fragments arranged by size: 3431 919 623 544 SmlI C'TyrA_G Cuts at: 0 321 358 532 592 2504 3841 5517 Size: 321 37 174 60 1912 1337 1676 Fragments arranged by size: 1912 1676 1337 321 174 60 37 SphI G_CATG'C Cuts at: 0 230 5517 Size: 230 5287 SspI AAT'ATT Cuts at: 0 3224 5517 Size: 3224 2293 StuI AGG'CCT Cuts at: 0 1031 1336 1985 5517 Size: 1031 305 649 3532 Fragments arranged by size: 3532 1031 649 305 StyI C'CwwG_G Cuts at: 0 398 927 2142 2318 2393 2954 3974 5030 Size: 398 529 1215 176 75 561 1020 1056 Cuts at: 5030 5202 5517 Size: 172 315 Fragments arranged by size: 1215 1056 1020 561 529 398 315 176 172 75 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 235 277 1459 2525 4018 4665 5080 5461 Size: 235 42 1182 1066 1493 647 415 381 Cuts at: 5461 5517 Size: 56 Fragments arranged by size: 1493 1182 1066 647 415 381 235 56 42 TatI w'GTAC_w Cuts at: 0 824 3956 5517 Size: 824 3132 1561 Fragments arranged by size: 3132 1561 824 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 2140 2172 3991 4023 4030 4062 5083 5115 Size: 2140 32 1819 32 7 32 1021 32 Cuts at: 5115 5517 Size: 402 Fragments arranged by size: 2140 1819 1021 402 32 32 32 32 7 Tth111I GACn'n_nGTC Cuts at: 0 738 2245 5517 Size: 738 1507 3272 Fragments arranged by size: 3272 1507 738 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 2074 2122 2832 3729 4962 5517 Size: 2074 48 710 897 1233 555 Fragments arranged by size: 2074 1233 897 710 555 48 XhoI C'TCGA_G Cuts at: 0 532 5517 Size: 532 4985 XmaI C'CCGG_G Cuts at: 0 917 4348 4892 5517 Size: 917 3431 544 625 Fragments arranged by size: 3431 917 625 544 XmnI GAAnn'nnTTC Cuts at: 0 1285 2996 5517 Size: 1285 1711 2521 Fragments arranged by size: 2521 1711 1285 ZraI GAC'GTC Cuts at: 0 2802 5517 Size: 2802 2715 Enzymes that do cut: AarI AatII AccI AcuI AfeI AflIII AgeI AhdI AleI AlfI AlwNI ApaI AvaI AvrII BamHI BanI BanII BbeI BbsI BbvCI BcgI BclI BfrBI BglI BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspHI BspMI BsrBI BsrDI BsrFI BstAPI BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRV FalI HaeII Hin4I HindIII KasI MfeI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NsiI NspI PasI PciI PflMI PfoI PmlI PpiI PpuMI PshAI PspOMI PsrI PstI PvuII SacI SacII SanDI SapI ScaI SexAI SfcI SfoI SmaI SmlI SphI SspI StuI StyI TaqII TatI TstI Tth111I XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: Acc65I AclI AflII AloI ApaLI ApoI AscI AseI AsiSI BaeI BciVI BglII BmtI BsaBI BsiWI BspEI BsrGI BssHII BssSI BstBI BstEII BstZ17I CspCI DraI EcoRI FseI FspI FspAI HincII HpaI KpnI MluI NdeI NheI NotI NruI PacI PmeI PsiI PspXI PvuI RsrII SalI SbfI SfiI SgfI SgrAI SnaBI SpeI SrfI SwaI XbaI