(Linear) (Six-base) MAPSORT of: KIAA1286.seq Check: 5843 from: 1 to: 3615 KIAA1286.orf With 182 enzymes: SgfI * July 18, 2007 13:35 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 2135 3528 3615 Size: 2135 1393 87 Fragments arranged by size: 2135 1393 87 AccI GT'mk_AC Cuts at: 0 128 563 3615 Size: 128 435 3052 Fragments arranged by size: 3052 435 128 Acc65I G'GTAC_C Cuts at: 0 2749 3615 Size: 2749 866 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 206 455 911 1258 1666 2254 3241 3376 Size: 206 249 456 347 408 588 987 135 Cuts at: 3376 3615 Size: 239 Fragments arranged by size: 987 588 456 408 347 249 239 206 135 AflIII A'CryG_T Cuts at: 0 1051 3615 Size: 1051 2564 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 2143 3550 3615 Size: 2143 1407 65 Fragments arranged by size: 2143 1407 65 AlwNI CAG_nnn'CTG Cuts at: 0 2343 2939 3385 3615 Size: 2343 596 446 230 Fragments arranged by size: 2343 596 446 230 ApaI G_GGCC'C Cuts at: 0 612 864 2211 2289 2417 3587 3615 Size: 612 252 1347 78 128 1170 28 Fragments arranged by size: 1347 1170 612 252 128 78 28 ApaLI G'TGCA_C Cuts at: 0 1055 3615 Size: 1055 2560 ApoI r'AATT_y Cuts at: 0 1882 3615 Size: 1882 1733 AseI AT'TA_AT Cuts at: 0 2585 3615 Size: 2585 1030 AvaI C'yCGr_G Cuts at: 0 83 2110 2131 3128 3299 3615 Size: 83 2027 21 997 171 316 Fragments arranged by size: 2027 997 316 171 83 21 BamHI G'GATC_C Cuts at: 0 884 1824 3615 Size: 884 940 1791 Fragments arranged by size: 1791 940 884 BanI G'GyrC_C Cuts at: 0 829 1114 2749 3615 Size: 829 285 1635 866 Fragments arranged by size: 1635 866 829 285 BanII G_rGCy'C Cuts at: 0 612 864 1073 1091 2211 2289 2417 2519 Size: 612 252 209 18 1120 78 128 102 Cuts at: 2519 2567 2645 3587 3615 Size: 48 78 942 28 Fragments arranged by size: 1120 942 612 252 209 128 102 78 78 48 28 18 BbeI G_GCGC'C Cuts at: 0 833 3615 Size: 833 2782 BbsI GAAGACnn'nnnn_ Cuts at: 0 443 638 1627 2156 2180 2471 3212 3482 Size: 443 195 989 529 24 291 741 270 Cuts at: 3482 3615 Size: 133 Fragments arranged by size: 989 741 529 443 291 270 195 133 24 BciVI GTATCCnnnnn_n' Cuts at: 0 2400 3615 Size: 2400 1215 BclI T'GATC_A Cuts at: 0 3278 3615 Size: 3278 337 BfrBI ATG'CAT Cuts at: 0 319 3615 Size: 319 3296 BglI GCCn_nnn'nGGC Cuts at: 0 1112 2412 2523 3615 Size: 1112 1300 111 1092 Fragments arranged by size: 1300 1112 1092 111 BglII A'GATC_T Cuts at: 0 1457 3615 Size: 1457 2158 BlpI GC'TnA_GC Cuts at: 0 1598 3615 Size: 1598 2017 Bme1580I G_kGCm'C Cuts at: 0 527 612 857 864 1059 1334 2122 2211 Size: 527 85 245 7 195 275 788 89 Cuts at: 2211 2289 2417 3137 3587 3615 Size: 78 128 720 450 28 Fragments arranged by size: 788 720 527 450 275 245 195 128 89 85 78 28 7 BmgBI CAC'GTC Cuts at: 0 2178 3351 3615 Size: 2178 1173 264 Fragments arranged by size: 2178 1173 264 BmrI ACTGGGnnnn_n' Cuts at: 0 867 2531 3615 Size: 867 1664 1084 Fragments arranged by size: 1664 1084 867 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 26 1173 1738 2138 2928 3412 3615 Size: 26 1147 565 400 790 484 203 Fragments arranged by size: 1147 790 565 484 400 203 26 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1786 1948 2266 2458 2533 2863 2870 3407 Size: 1786 162 318 192 75 330 7 537 Cuts at: 3407 3615 Size: 208 Fragments arranged by size: 1786 537 330 318 208 192 162 75 7 Bpu10I CC'TnA_GC Cuts at: 0 3177 3568 3615 Size: 3177 391 47 Fragments arranged by size: 3177 391 47 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 52 592 1283 1306 1878 3478 3615 Size: 52 540 691 23 572 1600 137 Fragments arranged by size: 1600 691 572 540 137 52 23 BsaI GGTCTCn'nnnn_ Cuts at: 0 82 1474 3055 3209 3615 Size: 82 1392 1581 154 406 Fragments arranged by size: 1581 1392 406 154 82 BsaHI Gr'CG_yC Cuts at: 0 141 734 830 3091 3615 Size: 141 593 96 2261 524 Fragments arranged by size: 2261 593 524 141 96 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 1387 1417 1633 1663 2149 2179 2928 2958 Size: 1387 30 216 30 486 30 749 30 Cuts at: 2958 3223 3253 3615 Size: 265 30 362 Fragments arranged by size: 1387 749 486 362 265 216 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 487 1270 1654 1969 1978 2470 2489 3615 Size: 487 783 384 315 9 492 19 1126 Fragments arranged by size: 1126 783 492 487 384 315 19 9 BseYI C'CCAG_C Cuts at: 0 110 349 1066 2969 3360 3615 Size: 110 239 717 1903 391 255 Fragments arranged by size: 1903 717 391 255 239 110 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1022 1649 1814 2248 2513 3298 3556 3615 Size: 1022 627 165 434 265 785 258 59 Fragments arranged by size: 1022 785 627 434 265 258 165 59 BsiEI CG_ry'CG Cuts at: 0 2747 3615 Size: 2747 868 BsiHKAI G_wGCw'C Cuts at: 0 76 1059 2645 3615 Size: 76 983 1586 970 Fragments arranged by size: 1586 983 970 76 BsmI GAATG_Cn' Cuts at: 0 36 223 1039 3615 Size: 36 187 816 2576 Fragments arranged by size: 2576 816 187 36 Bsp1286I G_dGCh'C Cuts at: 0 76 527 612 857 864 1059 1073 1091 Size: 76 451 85 245 7 195 14 18 Cuts at: 1091 1334 2122 2211 2289 2417 2519 2567 2645 Size: 243 788 89 78 128 102 48 78 Cuts at: 2645 3137 3587 3615 Size: 492 450 28 Fragments arranged by size: 788 492 451 450 245 243 195 128 102 89 85 78 78 76 48 28 18 14 7 BspHI T'CATG_A Cuts at: 0 1076 3615 Size: 1076 2539 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 979 1725 1817 2135 2597 3528 3615 Size: 979 746 92 318 462 931 87 Fragments arranged by size: 979 931 746 462 318 92 87 BsrBI CCG'CTC Cuts at: 0 1680 3615 Size: 1680 1935 BsrDI GCAATG_nn' Cuts at: 0 684 3615 Size: 684 2931 BsrFI r'CCGG_y Cuts at: 0 41 566 2746 3615 Size: 41 525 2180 869 Fragments arranged by size: 2180 869 525 41 BsrGI T'GTAC_A Cuts at: 0 714 3615 Size: 714 2901 BstAPI GCAn_nnn'nTGC Cuts at: 0 812 2448 2691 3615 Size: 812 1636 243 924 Fragments arranged by size: 1636 924 812 243 BstXI CCAn_nnnn'nTGG Cuts at: 0 1764 1899 2628 3615 Size: 1764 135 729 987 Fragments arranged by size: 1764 987 729 135 BstYI r'GATC_y Cuts at: 0 884 1457 1824 3615 Size: 884 573 367 1791 Fragments arranged by size: 1791 884 573 367 Bsu36I CC'TnA_GG Cuts at: 0 749 3615 Size: 749 2866 BtgI C'CryG_G Cuts at: 0 1757 2859 3108 3210 3482 3615 Size: 1757 1102 249 102 272 133 Fragments arranged by size: 1757 1102 272 249 133 102 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 1238 3571 3615 Size: 1238 2333 44 Fragments arranged by size: 2333 1238 44 BtsI GCAGTG_nn' Cuts at: 0 609 1175 1637 2659 3087 3442 3615 Size: 609 566 462 1022 428 355 173 Fragments arranged by size: 1022 609 566 462 428 355 173 ClaI AT'CG_AT Cuts at: 0 626 3284 3615 Size: 626 2658 331 Fragments arranged by size: 2658 626 331 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 807 842 3615 Size: 807 35 2773 Fragments arranged by size: 2773 807 35 DraIII CAC_nnn'GTG Cuts at: 0 1168 2761 3615 Size: 1168 1593 854 Fragments arranged by size: 1593 1168 854 EaeI y'GGCC_r Cuts at: 0 1172 2744 2923 3615 Size: 1172 1572 179 692 Fragments arranged by size: 1572 1172 692 179 EagI C'GGCC_G Cuts at: 0 2744 3615 Size: 2744 871 EarI CTCTTCn'nnn_ Cuts at: 0 694 1078 1259 1265 1280 1705 2794 2897 Size: 694 384 181 6 15 425 1089 103 Cuts at: 2897 2975 3403 3415 3615 Size: 78 428 12 200 Fragments arranged by size: 1089 694 428 425 384 200 181 103 78 15 12 6 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 1935 2029 2293 2492 3615 Size: 1935 94 264 199 1123 Fragments arranged by size: 1935 1123 264 199 94 EcoICRI GAG'CTC Cuts at: 0 2643 3615 Size: 2643 972 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 206 455 911 1258 1666 1786 1948 2254 Size: 206 249 456 347 408 120 162 306 Cuts at: 2254 2266 2458 2533 2863 2870 3241 3376 3407 Size: 12 192 75 330 7 371 135 31 Cuts at: 3407 3615 Size: 208 Fragments arranged by size: 456 408 371 347 330 306 249 208 206 192 162 135 120 75 31 12 7 EcoNI CCTnn'n_nnAGG Cuts at: 0 1443 1479 1813 3615 Size: 1443 36 334 1802 Fragments arranged by size: 1802 1443 334 36 EcoO109I rG'GnC_Cy Cuts at: 0 477 608 2049 2285 2413 2414 2838 2963 Size: 477 131 1441 236 128 1 424 125 Cuts at: 2963 3306 3583 3584 3615 Size: 343 277 1 31 Fragments arranged by size: 1441 477 424 343 277 236 131 128 125 31 1 1 EcoRI G'AATT_C Cuts at: 0 1882 3615 Size: 1882 1733 EcoRV GAT'ATC Cuts at: 0 210 3615 Size: 210 3405 FspI TGC'GCA Cuts at: 0 1132 3615 Size: 1132 2483 HaeII r_GCGC'y Cuts at: 0 833 1566 2270 2910 3615 Size: 833 733 704 640 705 Fragments arranged by size: 833 733 705 704 640 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 565 597 1387 1419 1721 1753 2021 2048 Size: 565 32 790 32 302 32 268 27 Cuts at: 2048 2053 2080 2536 2568 2708 2740 3270 3302 Size: 5 27 456 32 140 32 530 32 Cuts at: 3302 3615 Size: 313 Fragments arranged by size: 790 565 530 456 313 302 268 140 32 32 32 32 32 32 27 27 5 HincII GTy'rAC Cuts at: 0 1854 3615 Size: 1854 1761 HindIII A'AGCT_T Cuts at: 0 3074 3615 Size: 3074 541 KasI G'GCGC_C Cuts at: 0 829 3615 Size: 829 2786 KpnI G_GTAC'C Cuts at: 0 2753 3615 Size: 2753 862 MspA1I CmG'CkG Cuts at: 0 114 396 770 959 1062 1503 2035 2232 Size: 114 282 374 189 103 441 532 197 Cuts at: 2232 2431 3212 3345 3615 Size: 199 781 133 270 Fragments arranged by size: 781 532 441 374 282 270 199 197 189 133 114 103 NaeI GCC'GGC Cuts at: 0 43 3615 Size: 43 3572 NarI GG'CG_CC Cuts at: 0 830 3615 Size: 830 2785 NcoI C'CATG_G Cuts at: 0 1757 2859 3615 Size: 1757 1102 756 Fragments arranged by size: 1757 1102 756 NdeI CA'TA_TG Cuts at: 0 99 3615 Size: 99 3516 NgoMIV G'CCGG_C Cuts at: 0 41 3615 Size: 41 3574 NsiI A_TGCA'T Cuts at: 0 321 3615 Size: 321 3294 NspI r_CATG'y Cuts at: 0 319 1055 3615 Size: 319 736 2560 Fragments arranged by size: 2560 736 319 PasI CC'CwG_GG Cuts at: 0 2418 3615 Size: 2418 1197 PciI A'CATG_T Cuts at: 0 1051 3615 Size: 1051 2564 PflMI CCAn_nnn'nTGG Cuts at: 0 2761 2865 3615 Size: 2761 104 750 Fragments arranged by size: 2761 750 104 PfoI T'CCnGG_A Cuts at: 0 2840 2914 3140 3615 Size: 2840 74 226 475 Fragments arranged by size: 2840 475 226 74 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 3145 3177 3615 Size: 3145 32 438 Fragments arranged by size: 3145 438 32 PpuMI rG'GwC_Cy Cuts at: 0 477 2049 2838 2963 3615 Size: 477 1572 789 125 652 Fragments arranged by size: 1572 789 652 477 125 PspOMI G'GGCC_C Cuts at: 0 608 860 2207 2285 2413 3583 3615 Size: 608 252 1347 78 128 1170 32 Fragments arranged by size: 1347 1170 608 252 128 78 32 PstI C_TGCA'G Cuts at: 0 543 782 1583 1817 2666 3615 Size: 543 239 801 234 849 949 Fragments arranged by size: 949 849 801 543 239 234 PvuII CAG'CTG Cuts at: 0 2035 2232 2431 3615 Size: 2035 197 199 1184 Fragments arranged by size: 2035 1184 199 197 SacI G_AGCT'C Cuts at: 0 2645 3615 Size: 2645 970 SacII CC_GC'GG Cuts at: 0 3213 3615 Size: 3213 402 SapI GCTCTTCn'nnn_ Cuts at: 0 1078 1280 2897 3403 3615 Size: 1078 202 1617 506 212 Fragments arranged by size: 1617 1078 506 212 202 SexAI A'CCwGG_T Cuts at: 0 1164 2258 3615 Size: 1164 1094 1357 Fragments arranged by size: 1357 1164 1094 SfcI C'TryA_G Cuts at: 0 60 539 778 1461 1579 1813 2662 2818 Size: 60 479 239 683 118 234 849 156 Cuts at: 2818 2940 3615 Size: 122 675 Fragments arranged by size: 849 683 675 479 239 234 156 122 118 60 SfoI GGC'GCC Cuts at: 0 831 3615 Size: 831 2784 SmaI CCC'GGG Cuts at: 0 85 3301 3615 Size: 85 3216 314 Fragments arranged by size: 3216 314 85 SmlI C'TyrA_G Cuts at: 0 67 571 1298 1321 1857 3128 3493 3615 Size: 67 504 727 23 536 1271 365 122 Fragments arranged by size: 1271 727 536 504 365 122 67 23 SphI G_CATG'C Cuts at: 0 319 3615 Size: 319 3296 StuI AGG'CCT Cuts at: 0 2446 3615 Size: 2446 1169 StyI C'CwwG_G Cuts at: 0 284 1757 1949 2859 2926 3227 3445 3464 Size: 284 1473 192 910 67 301 218 19 Cuts at: 3464 3615 Size: 151 Fragments arranged by size: 1473 910 301 284 218 192 151 67 19 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 93 2154 3457 3615 Size: 93 2061 1303 158 Fragments arranged by size: 2061 1303 158 93 TatI w'GTAC_w Cuts at: 0 714 3615 Size: 714 2901 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 2928 2960 3223 3255 3615 Size: 2928 32 263 32 360 Fragments arranged by size: 2928 360 263 32 32 Tth111I GACn'n_nGTC Cuts at: 0 2836 3454 3615 Size: 2836 618 161 Fragments arranged by size: 2836 618 161 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 357 727 3615 Size: 357 370 2888 Fragments arranged by size: 2888 370 357 XhoI C'TCGA_G Cuts at: 0 3128 3615 Size: 3128 487 XmaI C'CCGG_G Cuts at: 0 83 3299 3615 Size: 83 3216 316 Fragments arranged by size: 3216 316 83 XmnI GAAnn'nnTTC Cuts at: 0 3397 3615 Size: 3397 218 Enzymes that do cut: AarI AccI Acc65I AcuI AflIII AlfI AlwNI ApaI ApaLI ApoI AseI AvaI BamHI BanI BanII BbeI BbsI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaHI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspHI BspMI BsrBI BsrDI BsrFI BsrGI BstAPI BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraIII EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FspI HaeII Hin4I HincII HindIII KasI KpnI MspA1I NaeI NarI NcoI NdeI NgoMIV NsiI NspI PasI PciI PflMI PfoI PpiI PpuMI PspOMI PstI PvuII SacI SacII SapI SexAI SfcI SfoI SmaI SmlI SphI StuI StyI TaqII TatI TstI Tth111I XcmI XhoI XmaI XmnI Enzymes that do not cut: AatII AclI AfeI AflII AgeI AhdI AleI AloI AscI AsiSI AvrII BaeI BbvCI BcgI BmtI BsaAI BsaBI BsaWI BsiWI BsmBI BspEI BssHII BssSI BstBI BstEII BstZ17I DraI DrdI FalI FseI FspAI HpaI MfeI MluI MmeI MscI MslI NheI NotI NruI PacI PmeI PmlI PshAI PsiI PspXI PsrI PvuI RsrII SalI SanDI SbfI ScaI SfiI SgfI SgrAI SnaBI SpeI SrfI SspI SwaI XbaI ZraI