(Linear) (Six-base) MAPSORT of: KIAA1479.seq Check: 4436 from: 1 to: 3033 KIAA1479.orf With 182 enzymes: SgfI * October 24, 2006 15:16 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 1840 3033 Size: 1840 1193 AccI GT'mk_AC Cuts at: 0 98 1862 2140 3033 Size: 98 1764 278 893 Fragments arranged by size: 1764 893 278 98 Acc65I G'GTAC_C Cuts at: 0 409 3033 Size: 409 2624 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 92 128 1349 1709 2482 3033 Size: 92 36 1221 360 773 551 Fragments arranged by size: 1221 773 551 360 92 36 AflIII A'CryG_T Cuts at: 0 1877 2327 3033 Size: 1877 450 706 Fragments arranged by size: 1877 706 450 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1881 3033 Size: 1881 1152 AlwNI CAG_nnn'CTG Cuts at: 0 565 1054 1541 3033 Size: 565 489 487 1492 Fragments arranged by size: 1492 565 489 487 ApoI r'AATT_y Cuts at: 0 191 1711 2712 3033 Size: 191 1520 1001 321 Fragments arranged by size: 1520 1001 321 191 AvaI C'yCGr_G Cuts at: 0 1244 3033 Size: 1244 1789 AvrII C'CTAG_G Cuts at: 0 2926 3033 Size: 2926 107 BamHI G'GATC_C Cuts at: 0 1615 2541 3033 Size: 1615 926 492 Fragments arranged by size: 1615 926 492 BanI G'GyrC_C Cuts at: 0 409 3033 Size: 409 2624 BanII G_rGCy'C Cuts at: 0 1229 3033 Size: 1229 1804 BbsI GAAGACnn'nnnn_ Cuts at: 0 1082 1454 1664 2167 3033 Size: 1082 372 210 503 866 Fragments arranged by size: 1082 866 503 372 210 BclI T'GATC_A Cuts at: 0 2382 3033 Size: 2382 651 BfrBI ATG'CAT Cuts at: 0 418 3033 Size: 418 2615 BglI GCCn_nnn'nGGC Cuts at: 0 146 562 3033 Size: 146 416 2471 Fragments arranged by size: 2471 416 146 BmgBI CAC'GTC Cuts at: 0 2330 2967 3033 Size: 2330 637 66 Fragments arranged by size: 2330 637 66 BmrI ACTGGGnnnn_n' Cuts at: 0 42 1920 2282 2837 3033 Size: 42 1878 362 555 196 Fragments arranged by size: 1878 555 362 196 42 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 829 881 1031 1790 1926 2093 2687 2874 Size: 829 52 150 759 136 167 594 187 Cuts at: 2874 3033 Size: 159 Fragments arranged by size: 829 759 594 187 167 159 150 136 52 BsaI GGTCTCn'nnnn_ Cuts at: 0 1975 3033 Size: 1975 1058 BsaBI GATnn'nnATC Cuts at: 0 1481 3033 Size: 1481 1552 BsaHI Gr'CG_yC Cuts at: 0 138 2947 3033 Size: 138 2809 86 Fragments arranged by size: 2809 138 86 BsaWI w'CCGG_w Cuts at: 0 123 3033 Size: 123 2910 BseYI C'CCAG_C Cuts at: 0 797 3033 Size: 797 2236 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1449 3033 Size: 1449 1584 BsmI GAATG_Cn' Cuts at: 0 355 418 1840 3033 Size: 355 63 1422 1193 Fragments arranged by size: 1422 1193 355 63 Bsp1286I G_dGCh'C Cuts at: 0 1229 3033 Size: 1229 1804 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1840 2042 3033 Size: 1840 202 991 Fragments arranged by size: 1840 991 202 BsrDI GCAATG_nn' Cuts at: 0 156 1214 1844 3033 Size: 156 1058 630 1189 Fragments arranged by size: 1189 1058 630 156 BsrFI r'CCGG_y Cuts at: 0 2420 3033 Size: 2420 613 BssSI C'ACGA_G Cuts at: 0 1583 3033 Size: 1583 1450 BstAPI GCAn_nnn'nTGC Cuts at: 0 1846 3033 Size: 1846 1187 BstXI CCAn_nnnn'nTGG Cuts at: 0 1275 1785 2088 2206 2646 3033 Size: 1275 510 303 118 440 387 Fragments arranged by size: 1275 510 440 387 303 118 BstYI r'GATC_y Cuts at: 0 613 1615 1901 2541 3033 Size: 613 1002 286 640 492 Fragments arranged by size: 1002 640 613 492 286 BstZ17I GTA'TAC Cuts at: 0 1863 3033 Size: 1863 1170 BtgI C'CryG_G Cuts at: 0 1743 2081 2199 2205 2546 2802 3033 Size: 1743 338 118 6 341 256 231 Fragments arranged by size: 1743 341 338 256 231 118 6 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 596 2579 3033 Size: 596 1983 454 Fragments arranged by size: 1983 596 454 BtsI GCAGTG_nn' Cuts at: 0 1437 3033 Size: 1437 1596 ClaI AT'CG_AT Cuts at: 0 1148 2554 3033 Size: 1148 1406 479 Fragments arranged by size: 1406 1148 479 DrdI GACnn_nn'nnGTC Cuts at: 0 1456 1984 3033 Size: 1456 528 1049 Fragments arranged by size: 1456 1049 528 EaeI y'GGCC_r Cuts at: 0 575 1265 2202 3033 Size: 575 690 937 831 Fragments arranged by size: 937 831 690 575 EarI CTCTTCn'nnn_ Cuts at: 0 1394 2129 2173 2927 3033 Size: 1394 735 44 754 106 Fragments arranged by size: 1394 754 735 106 44 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 1911 2240 3033 Size: 1911 329 793 Fragments arranged by size: 1911 793 329 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 92 128 829 881 1031 1349 1709 1790 Size: 92 36 701 52 150 318 360 81 Cuts at: 1790 1926 2093 2482 2687 2874 3033 Size: 136 167 389 205 187 159 Fragments arranged by size: 701 389 360 318 205 187 167 159 150 136 92 81 52 36 EcoNI CCTnn'n_nnAGG Cuts at: 0 2721 3033 Size: 2721 312 EcoO109I rG'GnC_Cy Cuts at: 0 804 2565 3033 Size: 804 1761 468 Fragments arranged by size: 1761 804 468 EcoRI G'AATT_C Cuts at: 0 1711 3033 Size: 1711 1322 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 3000 3033 Size: 3000 33 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 1745 1777 1903 1935 2062 2094 2636 2668 Size: 1745 32 126 32 127 32 542 32 Cuts at: 2668 2856 2888 3033 Size: 188 32 145 Fragments arranged by size: 1745 542 188 145 127 126 32 32 32 32 32 HincII GTy'rAC Cuts at: 0 99 1652 3033 Size: 99 1553 1381 Fragments arranged by size: 1553 1381 99 HindIII A'AGCT_T Cuts at: 0 1130 2368 3033 Size: 1130 1238 665 Fragments arranged by size: 1238 1130 665 HpaI GTT'AAC Cuts at: 0 1652 3033 Size: 1652 1381 KpnI G_GTAC'C Cuts at: 0 413 3033 Size: 413 2620 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 1454 1802 2026 3033 Size: 1454 348 224 1007 Fragments arranged by size: 1454 1007 348 224 MscI TGG'CCA Cuts at: 0 577 2204 3033 Size: 577 1627 829 Fragments arranged by size: 1627 829 577 MslI CAynn'nnrTG Cuts at: 0 344 1273 1796 1910 2086 2204 2471 2515 Size: 344 929 523 114 176 118 267 44 Cuts at: 2515 3033 Size: 518 Fragments arranged by size: 929 523 518 344 267 176 118 114 44 MspA1I CmG'CkG Cuts at: 0 180 801 3033 Size: 180 621 2232 Fragments arranged by size: 2232 621 180 NcoI C'CATG_G Cuts at: 0 1743 2081 2199 2205 2546 3033 Size: 1743 338 118 6 341 487 Fragments arranged by size: 1743 487 341 338 118 6 NdeI CA'TA_TG Cuts at: 0 772 3033 Size: 772 2261 NsiI A_TGCA'T Cuts at: 0 420 3033 Size: 420 2613 NspI r_CATG'y Cuts at: 0 1881 3033 Size: 1881 1152 PasI CC'CwG_GG Cuts at: 0 1636 3033 Size: 1636 1397 PciI A'CATG_T Cuts at: 0 1877 3033 Size: 1877 1156 PflMI CCAn_nnn'nTGG Cuts at: 0 1099 2065 3033 Size: 1099 966 968 Fragments arranged by size: 1099 968 966 PfoI T'CCnGG_A Cuts at: 0 806 1154 2664 3033 Size: 806 348 1510 369 Fragments arranged by size: 1510 806 369 348 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1216 1248 3033 Size: 1216 32 1785 Fragments arranged by size: 1785 1216 32 PpuMI rG'GwC_Cy Cuts at: 0 804 2565 3033 Size: 804 1761 468 Fragments arranged by size: 1761 804 468 PshAI GACnn'nnGTC Cuts at: 0 1246 3033 Size: 1246 1787 PsiI TTA'TAA Cuts at: 0 1136 3033 Size: 1136 1897 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 1334 1366 3033 Size: 1334 32 1667 Fragments arranged by size: 1667 1334 32 PstI C_TGCA'G Cuts at: 0 893 2171 2879 3033 Size: 893 1278 708 154 Fragments arranged by size: 1278 893 708 154 PvuII CAG'CTG Cuts at: 0 180 3033 Size: 180 2853 SalI G'TCGA_C Cuts at: 0 97 3033 Size: 97 2936 SapI GCTCTTCn'nnn_ Cuts at: 0 2129 2173 3033 Size: 2129 44 860 Fragments arranged by size: 2129 860 44 SbfI CC_TGCA'GG Cuts at: 0 2171 3033 Size: 2171 862 SfcI C'TryA_G Cuts at: 0 441 889 2167 2875 3033 Size: 441 448 1278 708 158 Fragments arranged by size: 1278 708 448 441 158 SgrAI Cr'CCGG_yG Cuts at: 0 2420 3033 Size: 2420 613 SspI AAT'ATT Cuts at: 0 2007 3033 Size: 2007 1026 StuI AGG'CCT Cuts at: 0 1098 3033 Size: 1098 1935 StyI C'CwwG_G Cuts at: 0 1093 1743 2081 2199 2205 2546 2926 3033 Size: 1093 650 338 118 6 341 380 107 Fragments arranged by size: 1093 650 380 341 338 118 107 6 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 595 778 1227 2076 3033 Size: 595 183 449 849 957 Fragments arranged by size: 957 849 595 449 183 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 2561 2593 2698 2730 2846 2878 3033 Size: 2561 32 105 32 116 32 155 Fragments arranged by size: 2561 155 116 105 32 32 32 Tth111I GACn'n_nGTC Cuts at: 0 2949 3033 Size: 2949 84 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 1055 1618 2499 3033 Size: 1055 563 881 534 Fragments arranged by size: 1055 881 563 534 Enzymes that do cut: AarI AccI Acc65I AcuI AflIII AlfI AlwNI ApoI AvaI AvrII BamHI BanI BanII BbsI BclI BfrBI BglI BmgBI BmrI BpmI BsaI BsaBI BsaHI BsaWI BseYI BsgI BsmI Bsp1286I BspMI BsrDI BsrFI BssSI BstAPI BstXI BstYI BstZ17I BtgI BtgZI BtsI ClaI DrdI EaeI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FalI Hin4I HincII HindIII HpaI KpnI MmeI MscI MslI MspA1I NcoI NdeI NsiI NspI PasI PciI PflMI PfoI PpiI PpuMI PshAI PsiI PsrI PstI PvuII SalI SapI SbfI SfcI SgrAI SspI StuI StyI TaqII TstI Tth111I XcmI Enzymes that do not cut: AatII AclI AfeI AflII AgeI AhdI AleI AloI ApaI ApaLI AscI AseI AsiSI BaeI BbeI BbvCI BcgI BciVI BglII BlpI Bme1580I BmtI BplI Bpu10I BpuEI BsaAI BsaXI BseRI BsiEI BsiHKAI BsiWI BsmBI BspEI BspHI BsrBI BsrGI BssHII BstBI BstEII Bsu36I CspCI DraI DraIII EagI EcoICRI EcoRV FseI FspI FspAI HaeII KasI MfeI MluI NaeI NarI NgoMIV NheI NotI NruI PacI PmeI PmlI PspOMI PspXI PvuI RsrII SacI SacII SanDI ScaI SexAI SfiI SfoI SgfI SmaI SmlI SnaBI SpeI SphI SrfI SwaI TatI XbaI XhoI XmaI XmnI ZraI