(Linear) (Six-base) MAPSORT of: KIAA2004.seq Check: 6245 from: 1 to: 4767 KIAA2004.orf With 182 enzymes: SgfI * July 18, 2007 13:36 .. AccI GT'mk_AC Cuts at: 0 540 3377 4767 Size: 540 2837 1390 Fragments arranged by size: 2837 1390 540 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 653 1312 4767 Size: 653 659 3455 Fragments arranged by size: 3455 659 653 AflIII A'CryG_T Cuts at: 0 478 4767 Size: 478 4289 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 861 3267 4448 4767 Size: 861 2406 1181 319 Fragments arranged by size: 2406 1181 861 319 ApaLI G'TGCA_C Cuts at: 0 1732 4767 Size: 1732 3035 ApoI r'AATT_y Cuts at: 0 101 502 586 640 681 1012 1135 1799 Size: 101 401 84 54 41 331 123 664 Cuts at: 1799 2011 2020 2269 2818 2863 3042 3076 3626 Size: 212 9 249 549 45 179 34 550 Cuts at: 3626 3781 4158 4383 4767 Size: 155 377 225 384 Fragments arranged by size: 664 550 549 401 384 377 331 249 225 212 179 155 123 101 84 54 45 41 34 9 AseI AT'TA_AT Cuts at: 0 1780 4523 4767 Size: 1780 2743 244 Fragments arranged by size: 2743 1780 244 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 467 500 4767 Size: 467 33 4267 Fragments arranged by size: 4267 467 33 BamHI G'GATC_C Cuts at: 0 2537 3720 4767 Size: 2537 1183 1047 Fragments arranged by size: 2537 1183 1047 BanI G'GyrC_C Cuts at: 0 2881 4767 Size: 2881 1886 BanII G_rGCy'C Cuts at: 0 425 4040 4767 Size: 425 3615 727 Fragments arranged by size: 3615 727 425 BbsI GAAGACnn'nnnn_ Cuts at: 0 824 1598 2048 2876 4516 4767 Size: 824 774 450 828 1640 251 Fragments arranged by size: 1640 828 824 774 450 251 BciVI GTATCCnnnnn_n' Cuts at: 0 3232 3554 4201 4767 Size: 3232 322 647 566 Fragments arranged by size: 3232 647 566 322 BclI T'GATC_A Cuts at: 0 2657 4767 Size: 2657 2110 BfrBI ATG'CAT Cuts at: 0 3244 4413 4767 Size: 3244 1169 354 Fragments arranged by size: 3244 1169 354 BglII A'GATC_T Cuts at: 0 1761 4767 Size: 1761 3006 Bme1580I G_kGCm'C Cuts at: 0 1736 2884 4767 Size: 1736 1148 1883 Fragments arranged by size: 1883 1736 1148 BmgBI CAC'GTC Cuts at: 0 120 4767 Size: 120 4647 BmrI ACTGGGnnnn_n' Cuts at: 0 266 3321 3376 4767 Size: 266 3055 55 1391 Fragments arranged by size: 3055 1391 266 55 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1681 4767 Size: 1681 3086 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 3616 4188 4767 Size: 3616 572 579 Fragments arranged by size: 3616 579 572 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 3462 4355 4767 Size: 3462 893 412 Fragments arranged by size: 3462 893 412 BsaAI yAC'GTr Cuts at: 0 688 2373 4767 Size: 688 1685 2394 Fragments arranged by size: 2394 1685 688 BsaBI GATnn'nnATC Cuts at: 0 56 4767 Size: 56 4711 BsaWI w'CCGG_w Cuts at: 0 2702 4767 Size: 2702 2065 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 2312 2342 4767 Size: 2312 30 2425 Fragments arranged by size: 2425 2312 30 BseYI C'CCAG_C Cuts at: 0 1465 4767 Size: 1465 3302 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 2183 4767 Size: 2183 2584 BsiHKAI G_wGCw'C Cuts at: 0 425 1736 4767 Size: 425 1311 3031 Fragments arranged by size: 3031 1311 425 BsmI GAATG_Cn' Cuts at: 0 848 949 3244 3484 4767 Size: 848 101 2295 240 1283 Fragments arranged by size: 2295 1283 848 240 101 BsmBI CGTCTCn'nnnn_ Cuts at: 0 1426 4767 Size: 1426 3341 Bsp1286I G_dGCh'C Cuts at: 0 425 1736 2884 4040 4767 Size: 425 1311 1148 1156 727 Fragments arranged by size: 1311 1156 1148 727 425 BspEI T'CCGG_A Cuts at: 0 2702 4767 Size: 2702 2065 BspHI T'CATG_A Cuts at: 0 1943 2660 4767 Size: 1943 717 2107 Fragments arranged by size: 2107 1943 717 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1478 4767 Size: 1478 3289 BsrDI GCAATG_nn' Cuts at: 0 386 654 1488 2153 2360 3306 4767 Size: 386 268 834 665 207 946 1461 Fragments arranged by size: 1461 946 834 665 386 268 207 BstAPI GCAn_nnn'nTGC Cuts at: 0 3090 3472 4767 Size: 3090 382 1295 Fragments arranged by size: 3090 1295 382 BstEII G'GTnAC_C Cuts at: 0 2328 4767 Size: 2328 2439 BstXI CCAn_nnnn'nTGG Cuts at: 0 1535 4767 Size: 1535 3232 BstYI r'GATC_y Cuts at: 0 1659 1695 1761 2537 3720 4767 Size: 1659 36 66 776 1183 1047 Fragments arranged by size: 1659 1183 1047 776 66 36 BtgI C'CryG_G Cuts at: 0 729 4767 Size: 729 4038 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 3134 4767 Size: 3134 1633 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 848 883 4767 Size: 848 35 3884 Fragments arranged by size: 3884 848 35 DraI TTT'AAA Cuts at: 0 1086 1098 4016 4767 Size: 1086 12 2918 751 Fragments arranged by size: 2918 1086 751 12 DraIII CAC_nnn'GTG Cuts at: 0 2812 4767 Size: 2812 1955 DrdI GACnn_nn'nnGTC Cuts at: 0 826 4767 Size: 826 3941 EaeI y'GGCC_r Cuts at: 0 4169 4318 4767 Size: 4169 149 449 Fragments arranged by size: 4169 449 149 EarI CTCTTCn'nnn_ Cuts at: 0 617 1829 2094 2771 3857 4767 Size: 617 1212 265 677 1086 910 Fragments arranged by size: 1212 1086 910 677 617 265 EcoICRI GAG'CTC Cuts at: 0 423 4767 Size: 423 4344 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 653 1312 3616 4188 4767 Size: 653 659 2304 572 579 Fragments arranged by size: 2304 659 653 579 572 EcoNI CCTnn'n_nnAGG Cuts at: 0 551 4767 Size: 551 4216 EcoRI G'AATT_C Cuts at: 0 502 586 681 2020 4767 Size: 502 84 95 1339 2747 Fragments arranged by size: 2747 1339 502 95 84 EcoRV GAT'ATC Cuts at: 0 1941 4767 Size: 1941 2826 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 175 1783 2120 3309 3628 4258 4767 Size: 175 1608 337 1189 319 630 509 Fragments arranged by size: 1608 1189 630 509 337 319 175 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 1185 1217 1318 1350 1428 1460 2930 2962 Size: 1185 32 101 32 78 32 1470 32 Cuts at: 2962 3668 3700 4693 4725 4767 Size: 706 32 993 32 42 Fragments arranged by size: 1470 1185 993 706 101 78 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 0 4678 4767 Size: 4678 89 HindIII A'AGCT_T Cuts at: 0 1358 4767 Size: 1358 3409 MfeI C'AATT_G Cuts at: 0 4430 4608 4767 Size: 4430 178 159 Fragments arranged by size: 4430 178 159 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 509 855 3005 4218 4767 Size: 509 346 2150 1213 549 Fragments arranged by size: 2150 1213 549 509 346 MscI TGG'CCA Cuts at: 0 4171 4320 4767 Size: 4171 149 447 Fragments arranged by size: 4171 447 149 MslI CAynn'nnrTG Cuts at: 0 1793 3119 3131 3179 4767 Size: 1793 1326 12 48 1588 Fragments arranged by size: 1793 1588 1326 48 12 MspA1I CmG'CkG Cuts at: 0 1469 4767 Size: 1469 3298 NcoI C'CATG_G Cuts at: 0 729 4767 Size: 729 4038 NdeI CA'TA_TG Cuts at: 0 2778 4409 4767 Size: 2778 1631 358 Fragments arranged by size: 2778 1631 358 NsiI A_TGCA'T Cuts at: 0 3246 4415 4767 Size: 3246 1169 352 Fragments arranged by size: 3246 1169 352 NspI r_CATG'y Cuts at: 0 482 3475 4767 Size: 482 2993 1292 Fragments arranged by size: 2993 1292 482 PciI A'CATG_T Cuts at: 0 478 4767 Size: 478 4289 PflMI CCAn_nnn'nTGG Cuts at: 0 1903 2221 3261 4767 Size: 1903 318 1040 1506 Fragments arranged by size: 1903 1506 1040 318 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 3031 3063 4767 Size: 3031 32 1704 Fragments arranged by size: 3031 1704 32 PstI C_TGCA'G Cuts at: 0 2432 4767 Size: 2432 2335 PvuII CAG'CTG Cuts at: 0 1469 4767 Size: 1469 3298 SacI G_AGCT'C Cuts at: 0 425 4767 Size: 425 4342 SapI GCTCTTCn'nnn_ Cuts at: 0 2771 4767 Size: 2771 1996 ScaI AGT'ACT Cuts at: 0 891 2434 4767 Size: 891 1543 2333 Fragments arranged by size: 2333 1543 891 SfcI C'TryA_G Cuts at: 0 541 2428 2450 4767 Size: 541 1887 22 2317 Fragments arranged by size: 2317 1887 541 22 SmlI C'TyrA_G Cuts at: 0 3477 4370 4767 Size: 3477 893 397 Fragments arranged by size: 3477 893 397 SnaBI TAC'GTA Cuts at: 0 2373 4767 Size: 2373 2394 SspI AAT'ATT Cuts at: 0 2727 3849 4767 Size: 2727 1122 918 Fragments arranged by size: 2727 1122 918 StyI C'CwwG_G Cuts at: 0 729 767 2234 2735 4767 Size: 729 38 1467 501 2032 Fragments arranged by size: 2032 1467 729 501 38 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 1277 1751 4767 Size: 1277 474 3016 Fragments arranged by size: 3016 1277 474 TatI w'GTAC_w Cuts at: 0 385 889 1235 2379 2432 2462 4767 Size: 385 504 346 1144 53 30 2305 Fragments arranged by size: 2305 1144 504 385 346 53 30 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 2919 2951 4767 Size: 2919 32 1816 Fragments arranged by size: 2919 1816 32 XmnI GAAnn'nnTTC Cuts at: 0 2269 2728 2845 3046 4767 Size: 2269 459 117 201 1721 Fragments arranged by size: 2269 1721 459 201 117 Enzymes that do cut: AccI AcuI AflIII AlfI ApaLI ApoI AseI BaeI BamHI BanI BanII BbsI BciVI BclI BfrBI BglII Bme1580I BmgBI BmrI BplI BpmI BpuEI BsaAI BsaBI BsaWI BsaXI BseYI BsgI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrDI BstAPI BstEII BstXI BstYI BtgI BtgZI CspCI DraI DraIII DrdI EaeI EarI EcoICRI Eco57MI EcoNI EcoRI EcoRV FalI Hin4I HincII HindIII MfeI MmeI MscI MslI MspA1I NcoI NdeI NsiI NspI PciI PflMI PpiI PstI PvuII SacI SapI ScaI SfcI SmlI SnaBI SspI StyI TaqII TatI TstI XmnI Enzymes that do not cut: AarI AatII Acc65I AclI AfeI AflII AgeI AhdI AleI AloI AlwNI ApaI AscI AsiSI AvaI AvrII BbeI BbvCI BcgI BglI BlpI BmtI Bpu10I BsaI BsaHI BseRI BsiEI BsiWI BsrBI BsrFI BsrGI BssHII BssSI BstBI BstZ17I Bsu36I BtsI ClaI EagI EciI EcoO109I FseI FspI FspAI HaeII HpaI KasI KpnI MluI NaeI NarI NgoMIV NheI NotI NruI PacI PasI PfoI PmeI PmlI PpuMI PshAI PsiI PspOMI PspXI PsrI PvuI RsrII SacII SalI SanDI SbfI SexAI SfiI SfoI SgfI SgrAI SmaI SpeI SphI SrfI StuI SwaI Tth111I XbaI XcmI XhoI XmaI ZraI