(Linear) (Six-base) MAPSORT of: KIBB4514.seq Check: 2377 from: 1 to: 4860 KIBB4514.orf With 182 enzymes: SgfI * October 24, 2006 15:09 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 1070 2620 3098 4860 Size: 1070 1550 478 1762 Fragments arranged by size: 1762 1550 1070 478 AccI GT'mk_AC Cuts at: 0 197 2975 4073 4860 Size: 197 2778 1098 787 Fragments arranged by size: 2778 1098 787 197 Acc65I G'GTAC_C Cuts at: 0 4704 4860 Size: 4704 156 AclI AA'CG_TT Cuts at: 0 4631 4860 Size: 4631 229 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 259 400 1285 3343 3479 4130 4860 Size: 259 141 885 2058 136 651 730 Fragments arranged by size: 2058 885 730 651 259 141 136 AflIII A'CryG_T Cuts at: 0 1688 2059 2561 4422 4860 Size: 1688 371 502 1861 438 Fragments arranged by size: 1861 1688 502 438 371 AhdI GACnn_n'nnGTC Cuts at: 0 3612 3936 4860 Size: 3612 324 924 Fragments arranged by size: 3612 924 324 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 2711 4860 Size: 2711 2149 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 321 353 1513 1545 3473 3505 4860 Size: 321 32 1160 32 1928 32 1355 Fragments arranged by size: 1928 1355 1160 321 32 32 32 AlwNI CAG_nnn'CTG Cuts at: 0 1095 1820 2966 3195 3761 3784 4860 Size: 1095 725 1146 229 566 23 1076 Fragments arranged by size: 1146 1095 1076 725 566 229 23 ApaI G_GGCC'C Cuts at: 0 470 2078 2155 4859 4860 Size: 470 1608 77 2704 1 Fragments arranged by size: 2704 1608 470 77 1 ApaLI G'TGCA_C Cuts at: 0 1051 4860 Size: 1051 3809 ApoI r'AATT_y Cuts at: 0 2004 3517 4860 Size: 2004 1513 1343 Fragments arranged by size: 2004 1513 1343 AvaI C'yCGr_G Cuts at: 0 119 203 253 472 571 1996 2208 3642 Size: 119 84 50 219 99 1425 212 1434 Cuts at: 3642 3689 3821 4860 Size: 47 132 1039 Fragments arranged by size: 1434 1425 1039 219 212 132 119 99 84 50 47 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 4696 4729 4860 Size: 4696 33 131 Fragments arranged by size: 4696 131 33 BamHI G'GATC_C Cuts at: 0 557 1852 4480 4860 Size: 557 1295 2628 380 Fragments arranged by size: 2628 1295 557 380 BanI G'GyrC_C Cuts at: 0 177 312 869 1058 2181 2505 2695 3330 Size: 177 135 557 189 1123 324 190 635 Cuts at: 3330 4704 4860 Size: 1374 156 Fragments arranged by size: 1374 1123 635 557 324 190 189 177 156 135 BanII G_rGCy'C Cuts at: 0 17 61 91 470 1318 1636 1649 2078 Size: 17 44 30 379 848 318 13 429 Cuts at: 2078 2155 3226 3593 4676 4859 4860 Size: 77 1071 367 1083 183 1 Fragments arranged by size: 1083 1071 848 429 379 367 318 183 77 44 30 17 13 1 BbeI G_GCGC'C Cuts at: 0 316 873 4860 Size: 316 557 3987 Fragments arranged by size: 3987 557 316 BbsI GAAGACnn'nnnn_ Cuts at: 0 3454 4118 4860 Size: 3454 664 742 Fragments arranged by size: 3454 742 664 BbvCI CC'TCA_GC Cuts at: 0 975 3044 4860 Size: 975 2069 1816 Fragments arranged by size: 2069 1816 975 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 3670 3704 4860 Size: 3670 34 1156 Fragments arranged by size: 3670 1156 34 BciVI GTATCCnnnnn_n' Cuts at: 0 4809 4860 Size: 4809 51 BclI T'GATC_A Cuts at: 0 2513 3506 4860 Size: 2513 993 1354 Fragments arranged by size: 2513 1354 993 BglI GCCn_nnn'nGGC Cuts at: 0 1867 2548 3133 4239 4860 Size: 1867 681 585 1106 621 Fragments arranged by size: 1867 1106 681 621 585 BglII A'GATC_T Cuts at: 0 653 2171 4860 Size: 653 1518 2689 Fragments arranged by size: 2689 1518 653 BlpI GC'TnA_GC Cuts at: 0 3238 4860 Size: 3238 1622 Bme1580I G_kGCm'C Cuts at: 0 182 470 1055 1386 2078 2155 2510 4859 Size: 182 288 585 331 692 77 355 2349 Cuts at: 4859 4860 Size: 1 Fragments arranged by size: 2349 692 585 355 331 288 182 77 1 BmrI ACTGGGnnnn_n' Cuts at: 0 2345 2893 4649 4860 Size: 2345 548 1756 211 Fragments arranged by size: 2345 1756 548 211 BmtI G_CTAG'C Cuts at: 0 274 4860 Size: 274 4586 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 909 1141 2607 4860 Size: 909 232 1466 2253 Fragments arranged by size: 2253 1466 909 232 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 448 481 811 841 1124 1150 1206 1330 Size: 448 33 330 30 283 26 56 124 Cuts at: 1330 2314 2602 3607 4036 4624 4817 4860 Size: 984 288 1005 429 588 193 43 Fragments arranged by size: 1005 984 588 448 429 330 288 283 193 124 56 43 33 30 26 Bpu10I CC'TnA_GC Cuts at: 0 295 975 2128 3044 4860 Size: 295 680 1153 916 1816 Fragments arranged by size: 1816 1153 916 680 295 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1698 1788 3595 4860 Size: 1698 90 1807 1265 Fragments arranged by size: 1807 1698 1265 90 BsaI GGTCTCn'nnnn_ Cuts at: 0 327 3599 3622 4281 4386 4860 Size: 327 3272 23 659 105 474 Fragments arranged by size: 3272 659 474 327 105 23 BsaAI yAC'GTr Cuts at: 0 2478 3684 4425 4860 Size: 2478 1206 741 435 Fragments arranged by size: 2478 1206 741 435 BsaHI Gr'CG_yC Cuts at: 0 313 583 870 1182 2342 3053 4860 Size: 313 270 287 312 1160 711 1807 Fragments arranged by size: 1807 1160 711 313 312 287 270 BsaWI w'CCGG_w Cuts at: 0 2620 2701 3406 4076 4860 Size: 2620 81 705 670 784 Fragments arranged by size: 2620 784 705 670 81 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 1008 1038 1867 1897 2104 2134 2489 2519 Size: 1008 30 829 30 207 30 355 30 Cuts at: 2519 4860 Size: 2341 Fragments arranged by size: 2341 1008 829 355 207 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 219 454 901 1029 1484 1789 2468 2471 Size: 219 235 447 128 455 305 679 3 Cuts at: 2471 2583 2775 2810 3297 3645 4256 4312 4315 Size: 112 192 35 487 348 611 56 3 Cuts at: 4315 4332 4860 Size: 17 528 Fragments arranged by size: 679 611 528 487 455 447 348 305 235 219 192 128 112 56 35 17 3 3 BseYI C'CCAG_C Cuts at: 0 93 303 432 632 1088 2277 2901 3991 Size: 93 210 129 200 456 1189 624 1090 Cuts at: 3991 4311 4860 Size: 320 549 Fragments arranged by size: 1189 1090 624 549 456 320 210 200 129 93 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 816 1017 1604 3664 4140 4860 Size: 816 201 587 2060 476 720 Fragments arranged by size: 2060 816 720 587 476 201 BsiEI CG_ry'CG Cuts at: 0 4409 4860 Size: 4409 451 BsiHKAI G_wGCw'C Cuts at: 0 1031 1055 1166 1318 1636 1649 2785 3469 Size: 1031 24 111 152 318 13 1136 684 Cuts at: 3469 3593 4860 Size: 124 1267 Fragments arranged by size: 1267 1136 1031 684 318 152 124 111 24 13 BsiWI C'GTAC_G Cuts at: 0 4517 4860 Size: 4517 343 BsmI GAATG_Cn' Cuts at: 0 3416 4435 4860 Size: 3416 1019 425 Fragments arranged by size: 3416 1019 425 BsmBI CGTCTCn'nnnn_ Cuts at: 0 1050 3060 4860 Size: 1050 2010 1800 Fragments arranged by size: 2010 1800 1050 Bsp1286I G_dGCh'C Cuts at: 0 17 61 91 182 470 1031 1055 1166 Size: 17 44 30 91 288 561 24 111 Cuts at: 1166 1318 1386 1636 1649 2078 2155 2510 2785 Size: 152 68 250 13 429 77 355 275 Cuts at: 2785 3226 3469 3593 4676 4859 4860 Size: 441 243 124 1083 183 1 Fragments arranged by size: 1083 561 441 429 355 288 275 250 243 183 152 124 111 91 77 68 44 30 24 17 13 1 BspEI T'CCGG_A Cuts at: 0 2620 3406 4860 Size: 2620 786 1454 Fragments arranged by size: 2620 1454 786 BspHI T'CATG_A Cuts at: 0 3164 3263 4860 Size: 3164 99 1597 Fragments arranged by size: 3164 1597 99 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1070 1494 2620 3098 4860 Size: 1070 424 1126 478 1762 Fragments arranged by size: 1762 1126 1070 478 424 BsrDI GCAATG_nn' Cuts at: 0 1082 2516 2826 3695 3746 4860 Size: 1082 1434 310 869 51 1114 Fragments arranged by size: 1434 1114 1082 869 310 51 BsrFI r'CCGG_y Cuts at: 0 73 309 334 2502 4404 4860 Size: 73 236 25 2168 1902 456 Fragments arranged by size: 2168 1902 456 236 73 25 BsrGI T'GTAC_A Cuts at: 0 2312 2894 4860 Size: 2312 582 1966 Fragments arranged by size: 2312 1966 582 BssHII G'CGCG_C Cuts at: 0 81 4860 Size: 81 4779 BssSI C'ACGA_G Cuts at: 0 3130 4582 4860 Size: 3130 1452 278 Fragments arranged by size: 3130 1452 278 BstAPI GCAn_nnn'nTGC Cuts at: 0 423 3204 3567 4860 Size: 423 2781 363 1293 Fragments arranged by size: 2781 1293 423 363 BstEII G'GTnAC_C Cuts at: 0 3117 4591 4860 Size: 3117 1474 269 Fragments arranged by size: 3117 1474 269 BstXI CCAn_nnnn'nTGG Cuts at: 0 420 1893 3210 3881 4137 4860 Size: 420 1473 1317 671 256 723 Fragments arranged by size: 1473 1317 723 671 420 256 BstYI r'GATC_y Cuts at: 0 557 653 1121 1852 1928 2171 4480 4860 Size: 557 96 468 731 76 243 2309 380 Fragments arranged by size: 2309 731 557 468 380 243 96 76 BstZ17I GTA'TAC Cuts at: 0 4074 4860 Size: 4074 786 Bsu36I CC'TnA_GG Cuts at: 0 847 2787 4253 4860 Size: 847 1940 1466 607 Fragments arranged by size: 1940 1466 847 607 BtgI C'CryG_G Cuts at: 0 44 261 614 1006 2079 2262 2925 3027 Size: 44 217 353 392 1073 183 663 102 Cuts at: 3027 3334 3369 4409 4476 4860 Size: 307 35 1040 67 384 Fragments arranged by size: 1073 1040 663 392 384 353 307 217 183 102 67 44 35 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 757 4860 Size: 757 4103 BtsI GCAGTG_nn' Cuts at: 0 835 1029 1253 1281 1786 4660 4860 Size: 835 194 224 28 505 2874 200 Fragments arranged by size: 2874 835 505 224 200 194 28 DraI TTT'AAA Cuts at: 0 2909 4860 Size: 2909 1951 DraIII CAC_nnn'GTG Cuts at: 0 2268 4860 Size: 2268 2592 EaeI y'GGCC_r Cuts at: 0 75 1040 3134 3662 3794 4406 4860 Size: 75 965 2094 528 132 612 454 Fragments arranged by size: 2094 965 612 528 454 132 75 EagI C'GGCC_G Cuts at: 0 4406 4860 Size: 4406 454 EarI CTCTTCn'nnn_ Cuts at: 0 148 193 652 3783 4211 4217 4683 4860 Size: 148 45 459 3131 428 6 466 177 Fragments arranged by size: 3131 466 459 428 177 148 45 6 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 550 2465 2816 4860 Size: 550 1915 351 2044 Fragments arranged by size: 2044 1915 550 351 EcoICRI GAG'CTC Cuts at: 0 1316 1634 1647 3591 4860 Size: 1316 318 13 1944 1269 Fragments arranged by size: 1944 1316 1269 318 13 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 259 400 448 481 811 841 1124 1150 Size: 259 141 48 33 330 30 283 26 Cuts at: 1150 1206 1285 1330 2314 2602 3343 3479 3607 Size: 56 79 45 984 288 741 136 128 Cuts at: 3607 4036 4130 4624 4817 4860 Size: 429 94 494 193 43 Fragments arranged by size: 984 741 494 429 330 288 283 259 193 141 136 128 94 79 56 48 45 43 33 30 26 EcoNI CCTnn'n_nnAGG Cuts at: 0 1074 2296 3325 4860 Size: 1074 1222 1029 1535 Fragments arranged by size: 1535 1222 1074 1029 EcoO109I rG'GnC_Cy Cuts at: 0 207 467 1511 2075 2151 2152 2540 3781 Size: 207 260 1044 564 76 1 388 1241 Cuts at: 3781 4164 4248 4655 4860 Size: 383 84 407 205 Fragments arranged by size: 1241 1044 564 407 388 383 260 207 205 84 76 1 FseI GG_CCGG'CC Cuts at: 0 4408 4860 Size: 4408 452 FspI TGC'GCA Cuts at: 0 397 4860 Size: 397 4463 HaeII r_GCGC'y Cuts at: 0 316 873 4860 Size: 316 557 3987 Fragments arranged by size: 3987 557 316 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 141 173 542 574 1122 1154 1867 1899 Size: 141 32 369 32 548 32 713 32 Cuts at: 1899 3040 3072 3598 3621 3630 3653 3922 3954 Size: 1141 32 526 23 9 23 269 32 Cuts at: 3954 4071 4103 4860 Size: 117 32 757 Fragments arranged by size: 1141 757 713 548 526 369 269 141 117 32 32 32 32 32 32 32 23 23 9 HincII GTy'rAC Cuts at: 0 168 4860 Size: 168 4692 KasI G'GCGC_C Cuts at: 0 312 869 4860 Size: 312 557 3991 Fragments arranged by size: 3991 557 312 KpnI G_GTAC'C Cuts at: 0 4708 4860 Size: 4708 152 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 566 1135 1309 2147 4472 4860 Size: 566 569 174 838 2325 388 Fragments arranged by size: 2325 838 569 566 388 174 MscI TGG'CCA Cuts at: 0 3664 3796 4860 Size: 3664 132 1064 Fragments arranged by size: 3664 1064 132 MslI CAynn'nnrTG Cuts at: 0 2251 3169 3208 3550 4860 Size: 2251 918 39 342 1310 Fragments arranged by size: 2251 1310 918 342 39 MspA1I CmG'CkG Cuts at: 0 33 52 97 111 263 291 616 979 Size: 33 19 45 14 152 28 325 363 Cuts at: 979 1092 2072 3336 4315 4372 4860 Size: 113 980 1264 979 57 488 Fragments arranged by size: 1264 980 979 488 363 325 152 113 57 45 33 28 19 14 NaeI GCC'GGC Cuts at: 0 311 4406 4860 Size: 311 4095 454 Fragments arranged by size: 4095 454 311 NarI GG'CG_CC Cuts at: 0 313 870 4860 Size: 313 557 3990 Fragments arranged by size: 3990 557 313 NcoI C'CATG_G Cuts at: 0 2079 3369 4860 Size: 2079 1290 1491 Fragments arranged by size: 2079 1491 1290 NgoMIV G'CCGG_C Cuts at: 0 309 4404 4860 Size: 309 4095 456 Fragments arranged by size: 4095 456 309 NheI G'CTAG_C Cuts at: 0 270 4860 Size: 270 4590 NspI r_CATG'y Cuts at: 0 699 1750 2063 2310 4860 Size: 699 1051 313 247 2550 Fragments arranged by size: 2550 1051 699 313 247 PasI CC'CwG_GG Cuts at: 0 1386 4063 4860 Size: 1386 2677 797 Fragments arranged by size: 2677 1386 797 PciI A'CATG_T Cuts at: 0 2059 4860 Size: 2059 2801 PflMI CCAn_nnn'nTGG Cuts at: 0 3784 4505 4860 Size: 3784 721 355 Fragments arranged by size: 3784 721 355 PfoI T'CCnGG_A Cuts at: 0 61 325 1532 4860 Size: 61 264 1207 3328 Fragments arranged by size: 3328 1207 264 61 PmlI CAC'GTG Cuts at: 0 3684 4425 4860 Size: 3684 741 435 Fragments arranged by size: 3684 741 435 PpuMI rG'GwC_Cy Cuts at: 0 207 1511 4164 4248 4860 Size: 207 1304 2653 84 612 Fragments arranged by size: 2653 1304 612 207 84 PshAI GACnn'nnGTC Cuts at: 0 2981 4860 Size: 2981 1879 PspOMI G'GGCC_C Cuts at: 0 466 2074 2151 4855 4860 Size: 466 1608 77 2704 5 Fragments arranged by size: 2704 1608 466 77 5 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 4501 4533 4860 Size: 4501 32 327 Fragments arranged by size: 4501 327 32 PstI C_TGCA'G Cuts at: 0 116 149 1067 1248 1276 1313 1829 1937 Size: 116 33 918 181 28 37 516 108 Cuts at: 1937 2962 3221 4377 4860 Size: 1025 259 1156 483 Fragments arranged by size: 1156 1025 918 516 483 259 181 116 108 37 33 28 PvuII CAG'CTG Cuts at: 0 52 97 979 1092 4315 4372 4860 Size: 52 45 882 113 3223 57 488 Fragments arranged by size: 3223 882 488 113 57 52 45 SacI G_AGCT'C Cuts at: 0 1318 1636 1649 3593 4860 Size: 1318 318 13 1944 1267 Fragments arranged by size: 1944 1318 1267 318 13 SacII CC_GC'GG Cuts at: 0 264 617 3337 4860 Size: 264 353 2720 1523 Fragments arranged by size: 2720 1523 353 264 SapI GCTCTTCn'nnn_ Cuts at: 0 193 4860 Size: 193 4667 SfcI C'TryA_G Cuts at: 0 112 145 1063 1244 1272 1309 1595 1825 Size: 112 33 918 181 28 37 286 230 Cuts at: 1825 1933 2036 2199 2958 3217 3831 3846 4373 Size: 108 103 163 759 259 614 15 527 Cuts at: 4373 4562 4860 Size: 189 298 Fragments arranged by size: 918 759 614 527 298 286 259 230 189 181 163 112 108 103 37 33 28 15 SfiI GGCCn_nnn'nGGCC Cuts at: 0 2548 4860 Size: 2548 2312 SfoI GGC'GCC Cuts at: 0 314 871 4860 Size: 314 557 3989 Fragments arranged by size: 3989 557 314 SmaI CCC'GGG Cuts at: 0 121 205 474 1998 4860 Size: 121 84 269 1524 2862 Fragments arranged by size: 2862 1524 269 121 84 SmlI C'TyrA_G Cuts at: 0 1677 1767 3610 4860 Size: 1677 90 1843 1250 Fragments arranged by size: 1843 1677 1250 90 SnaBI TAC'GTA Cuts at: 0 2478 4860 Size: 2478 2382 SspI AAT'ATT Cuts at: 0 2940 3914 4860 Size: 2940 974 946 Fragments arranged by size: 2940 974 946 StuI AGG'CCT Cuts at: 0 892 1360 3898 4860 Size: 892 468 2538 962 Fragments arranged by size: 2538 962 892 468 StyI C'CwwG_G Cuts at: 0 537 677 1470 1694 2079 3369 4244 4860 Size: 537 140 793 224 385 1290 875 616 Fragments arranged by size: 1290 875 793 616 537 385 224 140 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 1962 2104 2585 3087 3283 4065 4174 4860 Size: 1962 142 481 502 196 782 109 686 Fragments arranged by size: 1962 782 686 502 481 196 142 109 TatI w'GTAC_w Cuts at: 0 2312 2353 2894 3230 4615 4860 Size: 2312 41 541 336 1385 245 Fragments arranged by size: 2312 1385 541 336 245 41 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 1008 1040 2489 2521 2873 2905 4860 Size: 1008 32 1449 32 352 32 1955 Fragments arranged by size: 1955 1449 1008 352 32 32 32 Tth111I GACn'n_nGTC Cuts at: 0 366 4860 Size: 366 4494 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 51 1863 2130 3376 4860 Size: 51 1812 267 1246 1484 Fragments arranged by size: 1812 1484 1246 267 51 XmaI C'CCGG_G Cuts at: 0 119 203 472 1996 4860 Size: 119 84 269 1524 2864 Fragments arranged by size: 2864 1524 269 119 84 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AflIII AhdI AlfI AloI AlwNI ApaI ApaLI ApoI AvaI BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstEII BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI DraI DraIII EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I FseI FspI HaeII Hin4I HincII KasI KpnI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NheI NspI PasI PciI PflMI PfoI PmlI PpuMI PshAI PspOMI PsrI PstI PvuII SacI SacII SapI SfcI SfiI SfoI SmaI SmlI SnaBI SspI StuI StyI TaqII TatI TstI Tth111I XcmI XmaI Enzymes that do not cut: AatII AfeI AflII AgeI AleI AscI AseI AsiSI AvrII BfrBI BmgBI BsaBI BsrBI BstBI ClaI CspCI DrdI EcoRI EcoRV FalI FspAI HindIII HpaI MfeI MluI NdeI NotI NruI NsiI PacI PmeI PpiI PsiI PspXI PvuI RsrII SalI SanDI SbfI ScaI SexAI SgfI SgrAI SpeI SphI SrfI SwaI XbaI XhoI XmnI ZraI