(Linear) (Six-base) MAPSORT of: KIEE3703.seq Check: 6921 from: 1 to: 5037 KIEE3703.orf With 182 enzymes: SgfI * May 29, 2012 11:57 .. AatII G_ACGT'C Cuts at: 0 3416 5037 Size: 3416 1621 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1839 2185 3280 3319 5037 Size: 1839 346 1095 39 1718 Fragments arranged by size: 1839 1718 1095 346 39 AfeI AGC'GCT Cuts at: 0 4257 5037 Size: 4257 780 AflIII A'CryG_T Cuts at: 0 4538 4778 5037 Size: 4538 240 259 Fragments arranged by size: 4538 259 240 AleI CACnn'nnGTG Cuts at: 0 365 3733 4897 5037 Size: 365 3368 1164 140 Fragments arranged by size: 3368 1164 365 140 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 869 3751 5037 Size: 869 2882 1286 Fragments arranged by size: 2882 1286 869 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 4501 4533 5037 Size: 4501 32 504 Fragments arranged by size: 4501 504 32 AlwNI CAG_nnn'CTG Cuts at: 0 3157 3193 3401 4029 5037 Size: 3157 36 208 628 1008 Fragments arranged by size: 3157 1008 628 208 36 ApaI G_GGCC'C Cuts at: 0 30 434 865 1310 2483 2621 2628 2665 Size: 30 404 431 445 1173 138 7 37 Cuts at: 2665 3287 4451 4908 5037 Size: 622 1164 457 129 Fragments arranged by size: 1173 1164 622 457 445 431 404 138 129 37 30 7 ApaLI G'TGCA_C Cuts at: 0 4228 4396 5037 Size: 4228 168 641 Fragments arranged by size: 4228 641 168 ApoI r'AATT_y Cuts at: 0 2050 5037 Size: 2050 2987 AseI AT'TA_AT Cuts at: 0 4382 5037 Size: 4382 655 AvaI C'yCGr_G Cuts at: 0 1472 1903 1963 1985 2627 2658 3212 3521 Size: 1472 431 60 22 642 31 554 309 Cuts at: 3521 5037 Size: 1516 Fragments arranged by size: 1516 1472 642 554 431 309 60 31 22 BanI G'GyrC_C Cuts at: 0 206 237 1174 1859 3976 4134 4811 5037 Size: 206 31 937 685 2117 158 677 226 Fragments arranged by size: 2117 937 685 677 226 206 158 31 BanII G_rGCy'C Cuts at: 0 30 88 434 865 1310 1347 1502 1873 Size: 30 58 346 431 445 37 155 371 Cuts at: 1873 2174 2483 2569 2621 2628 2665 3287 3652 Size: 301 309 86 52 7 37 622 365 Cuts at: 3652 3802 4451 4908 4972 4994 5037 Size: 150 649 457 64 22 43 Fragments arranged by size: 649 622 457 445 431 371 365 346 309 301 155 150 86 64 58 52 43 37 37 30 22 7 BbeI G_GCGC'C Cuts at: 0 241 1863 4815 5037 Size: 241 1622 2952 222 Fragments arranged by size: 2952 1622 241 222 BbvCI CC'TCA_GC Cuts at: 0 667 2544 5037 Size: 667 1877 2493 Fragments arranged by size: 2493 1877 667 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 3966 4000 4786 4820 5037 Size: 3966 34 786 34 217 Fragments arranged by size: 3966 786 217 34 34 BclI T'GATC_A Cuts at: 0 4595 5037 Size: 4595 442 BfrBI ATG'CAT Cuts at: 0 3 4327 5037 Size: 3 4324 710 Fragments arranged by size: 4324 710 3 BglI GCCn_nnn'nGGC Cuts at: 0 677 1172 1465 3118 3647 4088 4832 4912 Size: 677 495 293 1653 529 441 744 80 Cuts at: 4912 5037 Size: 125 Fragments arranged by size: 1653 744 677 529 495 441 293 125 80 BglII A'GATC_T Cuts at: 0 1487 3782 5037 Size: 1487 2295 1255 Fragments arranged by size: 2295 1487 1255 BlpI GC'TnA_GC Cuts at: 0 141 422 4001 4078 5037 Size: 141 281 3579 77 959 Fragments arranged by size: 3579 959 281 141 77 Bme1580I G_kGCm'C Cuts at: 0 30 209 434 865 1310 1600 2483 2621 Size: 30 179 225 431 445 290 883 138 Cuts at: 2621 2628 2665 3287 4139 4232 4400 4451 4529 Size: 7 37 622 852 93 168 51 78 Cuts at: 4529 4809 4908 4938 5037 Size: 280 99 30 99 Fragments arranged by size: 883 852 622 445 431 290 280 225 179 168 138 99 99 93 78 51 37 30 30 7 BmgBI CAC'GTC Cuts at: 0 5030 5037 Size: 5030 7 BmrI ACTGGGnnnn_n' Cuts at: 0 604 2797 3474 3768 4251 4410 4948 5037 Size: 604 2193 677 294 483 159 538 89 Fragments arranged by size: 2193 677 604 538 483 294 159 89 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 5 102 149 215 538 695 926 1089 Size: 5 97 47 66 323 157 231 163 Cuts at: 1089 1300 1796 2044 2443 2474 3122 3580 4867 Size: 211 496 248 399 31 648 458 1287 Cuts at: 4867 5037 Size: 170 Fragments arranged by size: 1287 648 496 458 399 323 248 231 211 170 163 157 97 66 47 31 5 Bpu10I CC'TnA_GC Cuts at: 0 64 667 2544 4874 4988 5037 Size: 64 603 1877 2330 114 49 Fragments arranged by size: 2330 1877 603 114 64 49 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 565 5037 Size: 565 4472 BsaI GGTCTCn'nnnn_ Cuts at: 0 1222 1290 1890 2749 3331 4240 4361 5037 Size: 1222 68 600 859 582 909 121 676 Fragments arranged by size: 1222 909 859 676 600 582 121 68 BsaAI yAC'GTr Cuts at: 0 4086 4539 4781 5037 Size: 4086 453 242 256 Fragments arranged by size: 4086 453 256 242 BsaHI Gr'CG_yC Cuts at: 0 238 1860 3413 4812 4886 5037 Size: 238 1622 1553 1399 74 151 Fragments arranged by size: 1622 1553 1399 238 151 74 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 511 541 1529 1559 2017 2047 2211 2241 Size: 511 30 988 30 458 30 164 30 Cuts at: 2241 2447 2477 4165 4195 4358 4388 5037 Size: 206 30 1688 30 163 30 649 Fragments arranged by size: 1688 988 649 511 458 206 164 163 30 30 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 98 385 673 2053 2305 2884 3082 3523 Size: 98 287 288 1380 252 579 198 441 Cuts at: 3523 3886 3907 3916 4879 4944 5037 Size: 363 21 9 963 65 93 Fragments arranged by size: 1380 963 579 441 363 288 287 252 198 98 93 65 21 9 BseYI C'CCAG_C Cuts at: 0 73 211 314 426 458 936 1687 1753 Size: 73 138 103 112 32 478 751 66 Cuts at: 1753 1758 1949 2383 2793 3042 3170 3547 4016 Size: 5 191 434 410 249 128 377 469 Cuts at: 4016 5019 5037 Size: 1003 18 Fragments arranged by size: 1003 751 478 469 434 410 377 249 191 138 128 112 103 73 66 32 18 5 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 20 310 637 3143 3757 4138 4375 4426 Size: 20 290 327 2506 614 381 237 51 Cuts at: 4426 5037 Size: 611 Fragments arranged by size: 2506 614 611 381 327 290 237 51 20 BsiEI CG_ry'CG Cuts at: 0 4976 5037 Size: 4976 61 BsiHKAI G_wGCw'C Cuts at: 0 88 362 551 1502 3802 4232 4238 4400 Size: 88 274 189 951 2300 430 6 162 Cuts at: 4400 5037 Size: 637 Fragments arranged by size: 2300 951 637 430 274 189 162 88 6 BsmI GAATG_Cn' Cuts at: 0 1244 3438 5037 Size: 1244 2194 1599 Fragments arranged by size: 2194 1599 1244 Bsp1286I G_dGCh'C Cuts at: 0 30 88 209 362 434 551 865 1310 Size: 30 58 121 153 72 117 314 445 Cuts at: 1310 1347 1502 1600 1873 2174 2483 2569 2621 Size: 37 155 98 273 301 309 86 52 Cuts at: 2621 2628 2665 3287 3652 3802 4139 4232 4238 Size: 7 37 622 365 150 337 93 6 Cuts at: 4238 4400 4451 4529 4809 4908 4938 4972 4994 Size: 162 51 78 280 99 30 34 22 Cuts at: 4994 5037 Size: 43 Fragments arranged by size: 622 445 365 337 314 309 301 280 273 162 155 153 150 121 117 99 98 93 86 78 72 58 52 51 43 37 37 34 30 30 22 7 6 BspHI T'CATG_A Cuts at: 0 2084 5037 Size: 2084 2953 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 3065 5037 Size: 3065 1972 BsrBI CCG'CTC Cuts at: 0 2769 3366 5037 Size: 2769 597 1671 Fragments arranged by size: 2769 1671 597 BsrDI GCAATG_nn' Cuts at: 0 295 3818 4430 5037 Size: 295 3523 612 607 Fragments arranged by size: 3523 612 607 295 BsrFI r'CCGG_y Cuts at: 0 971 4414 4998 5037 Size: 971 3443 584 39 Fragments arranged by size: 3443 971 584 39 BsrGI T'GTAC_A Cuts at: 0 3604 4124 5037 Size: 3604 520 913 Fragments arranged by size: 3604 913 520 BssHII G'CGCG_C Cuts at: 0 3420 4915 5037 Size: 3420 1495 122 Fragments arranged by size: 3420 1495 122 BssSI C'ACGA_G Cuts at: 0 4231 4372 5037 Size: 4231 141 665 Fragments arranged by size: 4231 665 141 BstAPI GCAn_nnn'nTGC Cuts at: 0 297 624 915 3166 4029 4404 4721 5037 Size: 297 327 291 2251 863 375 317 316 Fragments arranged by size: 2251 863 375 327 317 316 297 291 BstXI CCAn_nnnn'nTGG Cuts at: 0 326 833 2022 3690 5037 Size: 326 507 1189 1668 1347 Fragments arranged by size: 1668 1347 1189 507 326 BstYI r'GATC_y Cuts at: 0 1487 2057 3071 3302 3762 3782 5037 Size: 1487 570 1014 231 460 20 1255 Fragments arranged by size: 1487 1255 1014 570 460 231 20 Bsu36I CC'TnA_GG Cuts at: 0 651 1845 2610 5037 Size: 651 1194 765 2427 Fragments arranged by size: 2427 1194 765 651 BtgI C'CryG_G Cuts at: 0 258 1029 1293 2273 3716 4064 5037 Size: 258 771 264 980 1443 348 973 Fragments arranged by size: 1443 980 973 771 348 264 258 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 1537 4739 5037 Size: 1537 3202 298 Fragments arranged by size: 3202 1537 298 BtsI GCAGTG_nn' Cuts at: 0 17 733 2897 4626 4791 5037 Size: 17 716 2164 1729 165 246 Fragments arranged by size: 2164 1729 716 246 165 17 DraIII CAC_nnn'GTG Cuts at: 0 3238 3277 3717 4278 4404 5037 Size: 3238 39 440 561 126 633 Fragments arranged by size: 3238 633 561 440 126 39 EaeI y'GGCC_r Cuts at: 0 441 966 1296 1721 2075 2276 2390 4303 Size: 441 525 330 425 354 201 114 1913 Cuts at: 4303 4973 5037 Size: 670 64 Fragments arranged by size: 1913 670 525 441 425 354 330 201 114 64 EagI C'GGCC_G Cuts at: 0 4973 5037 Size: 4973 64 EarI CTCTTCn'nnn_ Cuts at: 0 1490 1507 2111 2282 2642 2729 3356 3679 Size: 1490 17 604 171 360 87 627 323 Cuts at: 3679 5037 Size: 1358 Fragments arranged by size: 1490 1358 627 604 360 323 171 87 17 EcoICRI GAG'CTC Cuts at: 0 86 1500 3800 5037 Size: 86 1414 2300 1237 Fragments arranged by size: 2300 1414 1237 86 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 5 102 149 215 538 695 926 1089 Size: 5 97 47 66 323 157 231 163 Cuts at: 1089 1300 1796 1839 2044 2185 2443 2474 3122 Size: 211 496 43 205 141 258 31 648 Cuts at: 3122 3280 3319 3580 4867 5037 Size: 158 39 261 1287 170 Fragments arranged by size: 1287 648 496 323 261 258 231 211 205 170 163 158 157 141 97 66 47 43 39 31 5 EcoNI CCTnn'n_nnAGG Cuts at: 0 1985 5037 Size: 1985 3052 EcoO109I rG'GnC_Cy Cuts at: 0 26 60 77 430 431 504 580 646 Size: 26 34 17 353 1 73 76 66 Cuts at: 646 663 861 1003 1306 1307 1519 1570 1776 Size: 17 198 142 303 1 212 51 206 Cuts at: 1776 1930 1990 2480 2618 2662 3015 3110 3283 Size: 154 60 490 138 44 353 95 173 Cuts at: 3283 3284 3639 4447 4448 4904 5016 5037 Size: 1 355 808 1 456 112 21 Fragments arranged by size: 808 490 456 355 353 353 303 212 206 198 173 154 142 138 112 95 76 73 66 60 51 44 34 26 21 17 17 1 1 1 1 EcoRI G'AATT_C Cuts at: 0 2050 5037 Size: 2050 2987 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 2190 3357 5037 Size: 2190 1167 1680 Fragments arranged by size: 2190 1680 1167 FspI TGC'GCA Cuts at: 0 3376 5037 Size: 3376 1661 HaeII r_GCGC'y Cuts at: 0 241 398 897 1256 1863 2561 4259 4815 Size: 241 157 499 359 607 698 1698 556 Cuts at: 4815 5037 Size: 222 Fragments arranged by size: 1698 698 607 556 499 359 241 222 157 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 488 520 3063 3095 3565 3597 3759 3791 Size: 488 32 2543 32 470 32 162 32 Cuts at: 3791 3880 3912 5037 Size: 89 32 1125 Fragments arranged by size: 2543 1125 488 470 162 89 32 32 32 32 32 HincII GTy'rAC Cuts at: 0 4188 5037 Size: 4188 849 HindIII A'AGCT_T Cuts at: 0 414 1851 5037 Size: 414 1437 3186 Fragments arranged by size: 3186 1437 414 KasI G'GCGC_C Cuts at: 0 237 1859 4811 5037 Size: 237 1622 2952 226 Fragments arranged by size: 2952 1622 237 226 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 1306 5037 Size: 1306 3731 MscI TGG'CCA Cuts at: 0 968 1723 2077 4305 5037 Size: 968 755 354 2228 732 Fragments arranged by size: 2228 968 755 732 354 MslI CAynn'nnrTG Cuts at: 0 284 365 851 2089 3628 3733 4132 4897 Size: 284 81 486 1238 1539 105 399 765 Cuts at: 4897 5037 Size: 140 Fragments arranged by size: 1539 1238 765 486 399 284 140 105 81 MspA1I CmG'CkG Cuts at: 0 906 1351 2022 2163 2461 2548 2824 2903 Size: 906 445 671 141 298 87 276 79 Cuts at: 2903 4020 4122 4473 4926 5037 Size: 1117 102 351 453 111 Fragments arranged by size: 1117 906 671 453 445 351 298 276 141 111 102 87 79 NaeI GCC'GGC Cuts at: 0 5000 5037 Size: 5000 37 NarI GG'CG_CC Cuts at: 0 238 1860 4812 5037 Size: 238 1622 2952 225 Fragments arranged by size: 2952 1622 238 225 NcoI C'CATG_G Cuts at: 0 258 1029 1293 5037 Size: 258 771 264 3744 Fragments arranged by size: 3744 771 264 258 NgoMIV G'CCGG_C Cuts at: 0 4998 5037 Size: 4998 39 NruI TCG'CGA Cuts at: 0 1556 5034 5037 Size: 1556 3478 3 Fragments arranged by size: 3478 1556 3 NsiI A_TGCA'T Cuts at: 0 5 4329 5037 Size: 5 4324 708 Fragments arranged by size: 4324 708 5 NspI r_CATG'y Cuts at: 0 3258 4077 5037 Size: 3258 819 960 Fragments arranged by size: 3258 960 819 PasI CC'CwG_GG Cuts at: 0 724 1880 2562 2621 3226 5037 Size: 724 1156 682 59 605 1811 Fragments arranged by size: 1811 1156 724 682 605 59 PflMI CCAn_nnn'nTGG Cuts at: 0 975 4418 5037 Size: 975 3443 619 Fragments arranged by size: 3443 975 619 PfoI T'CCnGG_A Cuts at: 0 302 3854 4310 5037 Size: 302 3552 456 727 Fragments arranged by size: 3552 727 456 302 PmlI CAC'GTG Cuts at: 0 4086 4539 5037 Size: 4086 453 498 Fragments arranged by size: 4086 498 453 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 3789 3821 5037 Size: 3789 32 1216 Fragments arranged by size: 3789 1216 32 PpuMI rG'GwC_Cy Cuts at: 0 504 580 1519 1776 3015 5037 Size: 504 76 939 257 1239 2022 Fragments arranged by size: 2022 1239 939 504 257 76 PspOMI G'GGCC_C Cuts at: 0 26 430 861 1306 2479 2617 2624 2661 Size: 26 404 431 445 1173 138 7 37 Cuts at: 2661 3283 4447 4904 5037 Size: 622 1164 457 133 Fragments arranged by size: 1173 1164 622 457 445 431 404 138 133 37 26 7 PstI C_TGCA'G Cuts at: 0 452 636 2189 3062 3599 3869 4025 4616 Size: 452 184 1553 873 537 270 156 591 Cuts at: 4616 4832 4953 5037 Size: 216 121 84 Fragments arranged by size: 1553 873 591 537 452 270 216 184 156 121 84 PvuII CAG'CTG Cuts at: 0 2461 2903 4020 4122 4473 5037 Size: 2461 442 1117 102 351 564 Fragments arranged by size: 2461 1117 564 442 351 102 SacI G_AGCT'C Cuts at: 0 88 1502 3802 5037 Size: 88 1414 2300 1235 Fragments arranged by size: 2300 1414 1235 88 SanDI GG'GwC_CC Cuts at: 0 1519 5037 Size: 1519 3518 SapI GCTCTTCn'nnn_ Cuts at: 0 1490 1507 2642 3356 5037 Size: 1490 17 1135 714 1681 Fragments arranged by size: 1681 1490 1135 714 17 SbfI CC_TGCA'GG Cuts at: 0 4832 5037 Size: 4832 205 ScaI AGT'ACT Cuts at: 0 2437 5037 Size: 2437 2600 SexAI A'CCwGG_T Cuts at: 0 4784 5037 Size: 4784 253 SfcI C'TryA_G Cuts at: 0 448 632 2185 3058 3595 3865 4021 4612 Size: 448 184 1553 873 537 270 156 591 Cuts at: 4612 4828 4949 5037 Size: 216 121 88 Fragments arranged by size: 1553 873 591 537 448 270 216 184 156 121 88 SfiI GGCCn_nnn'nGGCC Cuts at: 0 3118 5037 Size: 3118 1919 SfoI GGC'GCC Cuts at: 0 239 1861 4813 5037 Size: 239 1622 2952 224 Fragments arranged by size: 2952 1622 239 224 SmaI CCC'GGG Cuts at: 0 1965 2629 2660 3523 5037 Size: 1965 664 31 863 1514 Fragments arranged by size: 1965 1514 863 664 31 SmlI C'TyrA_G Cuts at: 0 544 5037 Size: 544 4493 SspI AAT'ATT Cuts at: 0 4335 5037 Size: 4335 702 StuI AGG'CCT Cuts at: 0 3844 4826 4879 5037 Size: 3844 982 53 158 Fragments arranged by size: 3844 982 158 53 StyI C'CwwG_G Cuts at: 0 54 258 500 1029 1293 2408 2864 3005 Size: 54 204 242 529 264 1115 456 141 Cuts at: 3005 3011 3116 3290 3437 5037 Size: 6 105 174 147 1600 Fragments arranged by size: 1600 1115 529 456 264 242 204 174 147 141 105 54 6 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 938 2296 2692 3144 3561 3745 4392 5037 Size: 938 1358 396 452 417 184 647 645 Fragments arranged by size: 1358 938 647 645 452 417 396 184 TatI w'GTAC_w Cuts at: 0 2435 3604 4124 5037 Size: 2435 1169 520 913 Fragments arranged by size: 2435 1169 913 520 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 511 543 1529 1561 2211 2243 4358 4390 Size: 511 32 986 32 650 32 2115 32 Cuts at: 4390 5037 Size: 647 Fragments arranged by size: 2115 986 650 647 511 32 32 32 32 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 1439 3555 3687 3690 5037 Size: 1439 2116 132 3 1347 Fragments arranged by size: 2116 1439 1347 132 3 XmaI C'CCGG_G Cuts at: 0 1963 2627 2658 3521 5037 Size: 1963 664 31 863 1516 Fragments arranged by size: 1963 1516 863 664 31 XmnI GAAnn'nnTTC Cuts at: 0 1333 2105 5037 Size: 1333 772 2932 Fragments arranged by size: 2932 1333 772 ZraI GAC'GTC Cuts at: 0 3414 5037 Size: 3414 1623 Enzymes that do cut: AatII AcuI AfeI AflIII AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AvaI BanI BanII BbeI BbvCI BcgI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BpmI Bpu10I BpuEI BsaI BsaAI BsaHI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstXI BstYI Bsu36I BtgI BtgZI BtsI DraIII EaeI EagI EarI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII KasI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NruI NsiI NspI PasI PflMI PfoI PmlI PpiI PpuMI PspOMI PstI PvuII SacI SanDI SapI SbfI ScaI SexAI SfcI SfiI SfoI SmaI SmlI SspI StuI StyI TaqII TatI TstI XcmI XmaI XmnI ZraI Enzymes that do not cut: AarI AccI Acc65I AclI AflII AgeI AhdI AscI AsiSI AvrII BaeI BamHI BbsI BciVI BmtI BplI BsaBI BsaWI BsiWI BsmBI BspEI BstBI BstEII BstZ17I ClaI CspCI DraI DrdI EciI EcoRV FseI FspAI HpaI KpnI MfeI MluI NdeI NheI NotI PacI PciI PmeI PshAI PsiI PspXI PsrI PvuI RsrII SacII SalI SgfI SgrAI SnaBI SpeI SphI SrfI SwaI Tth111I XbaI XhoI