GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:03:41

Sequence gi568815578f:2209656_2440578 : 230923 bp : 44.72% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  26990  27116  127  1  1   87   98    18 0.787   3.02
 1.02 Intr +  27438  27557  120  1  0   74   51   116 0.679   6.97
 1.03 Intr +  45448  45720  273  2  0  122   63    84 0.795   6.81
 1.04 Term +  55739  56073  335  0  2   -6   42   241 0.096   4.87
 1.05 PlyA +  56082  56087    6                               1.05

 2.00 Prom +  56841  56880   40                              -7.16
 2.01 Sngl +  58686  59339  654  2  0   47   49   247 0.928  12.88
 2.02 PlyA +  59714  59719    6                               1.05

 3.00 Prom +  60472  60511   40                              -2.46
 3.01 Init +  83441  83471   31  1  1  111   93    57 0.338   6.86
 3.02 Intr +  86376  86415   40  1  1   81  105     7 0.324  -1.02
 3.03 Intr +  86794  86865   72  1  0   26  103    86 0.284   2.42
 3.04 Intr +  95971  96223  253  1  1  102   49   179 0.334  12.84
 3.05 Intr +  96413  96507   95  1  2  128   37   -16 0.352  -3.94
 3.06 Intr +  99973 100175  203  1  2  106   82   152 0.814  15.33
 3.07 Intr + 100523 100762  240  0  0  114   78   197 0.978  18.82
 3.08 Intr + 101356 101474  119  2  2   32   98   157 0.936  11.28
 3.09 Intr + 103243 103371  129  0  0   48  101   107 0.996   8.89
 3.10 Intr + 107413 107590  178  0  1   35   82   210 0.870  14.59
 3.11 Intr + 107695 107830  136  2  1   63  115   187 0.986  18.53
 3.12 Intr + 116194 116297  104  1  2   70   88    40 0.941   2.02
 3.13 Intr + 118465 118710  246  2  0   69   97   552 0.999  51.63
 3.14 Intr + 122347 122655  309  2  0   81   92   404 0.998  36.38
 3.15 Intr + 125461 125618  158  2  2   97   80   295 0.992  29.33
 3.16 Intr + 130199 130332  134  1  2  118   72   230 0.995  23.84
 3.17 Term + 130779 130926  148  0  1   64   49   181 0.967   9.17
 3.18 PlyA + 131396 131401    6                               1.05

 4.03 PlyA - 132702 132697    6                               1.05
 4.02 Term - 139128 139110   19  2  1  123   53    33 0.029   1.09
 4.01 Init - 158559 158513   47  0  2   78  121    -8 0.350   1.65
 4.00 Prom - 158813 158774   40                              -0.96

 5.03 PlyA - 159470 159465    6                               1.05
 5.02 Term - 161176 160955  222  1  0   36   48   172 0.124   4.92
 5.01 Init - 165456 165325  132  0  0   80   92    76 0.320   5.43
 5.00 Prom - 166939 166900   40                              -5.96

 6.00 Prom + 178606 178645   40                              -4.66
 6.01 Init + 179495 179629  135  1  0   97  103    11 0.568   3.64
 6.02 Intr + 180848 180983  136  1  1   93  102     4 0.799   2.44
 6.03 Intr + 184797 184970  174  1  0  103   93   250 0.999  26.91
 6.04 Intr + 185539 185773  235  2  1  125   54   206 0.503  17.65
 6.05 Intr + 186804 187018  215  0  2   26   63   302 0.361  19.86
 6.06 Intr + 188234 188391  158  0  2  -14   81   278 0.690  16.63
 6.07 Intr + 189906 190083  178  2  1   91   80   294 0.997  28.39
 6.08 Intr + 190651 190789  139  2  1   94   52   217 0.988  18.22
 6.09 Intr + 193742 193845  104  2  2   97  107    76 0.989  10.22
 6.10 Intr + 193926 194168  243  1  0   99  116   414 0.932  42.77
 6.11 Intr + 207577 207918  342  2  0   91  115   347 0.993  33.10
 6.12 Intr + 210150 210212   63  1  0   94  115   -10 0.579   0.99
 6.13 Intr + 220791 220945  155  1  2  115   55   207 0.725  19.89
 6.14 Intr + 221239 221372  134  0  2   82   91   111 0.999  10.24
 6.15 Intr + 222835 222925   91  1  1  112   63    73 0.100   7.20
 6.16 Intr + 225360 225512  153  2  0   49   91    75 0.162   4.17
 6.17 Term + 228543 228707  165  2  0  122   48    70 0.286   4.32
 6.18 PlyA + 229104 229109    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  43896  43962   67  2  1   58   70    92 0.915   3.63
S.002 Term + 222835 222988  154  1  1  112   45   189 0.885  14.39


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:2209656_2440578|GENSCAN_predicted_peptide_1|284_aa
MRPGMLDGQRAGTLLAAQGDGGRNVFEEDEALISLVQSSQCQASFSNHFLAKMFVAYNML
QSKQGTLWKPEGEVRLAAVCQSEKCIGDVGDDEITSRINILEGASESCEYPNNKLFRRAY
PVSLALDCVSTSNENKIEKEEPGIQPNLISHTKKRKLRPGEIRPPTLTRPFYQERNSINI
NKKVIYNKTPFVGHQHQRPKVDKTTKMGRNQSRKAENSKNQSASSPPKDHSSSPAMEQSW
MKNDFDELTEVGFRRSVITNFSELKEDVRTHCKEAKNLEKRLDE

>gi568815578f:2209656_2440578|GENSCAN_predicted_CDS_1|855_bp
atgaggcctggtatgttagatgggcagagagccgggacactgctggctgcgcagggagat
gggggccggaacgtttttgaggaggatgaggctttgatttctctggtccaatcctctcag
tgtcaagcttccttctctaatcatttcttggcgaagatgtttgtggcttacaacatgctg
cagtcaaagcagggcacgctttggaagccagagggcgaggttcggctggctgcggtttgc
cagtctgaaaaatgtattggagacgtaggagatgatgaaatcacatctaggattaacatc
ctagaaggagcctcggagagctgtgaataccctaataataaattatttcgcagggcatat
cctgtgtctttagctttggattgtgtttctacctctaatgagaacaaaatagagaaggag
gagccaggcatacagccgaatttgatctcacataccaagaagaggaaactgaggcctgga
gagataaggccacccacccttaccagacccttttaccaagaaaggaatagcatcaacatc
aacaaaaaggtcatctacaacaaaaccccatttgtaggtcaccaacatcaaagaccaaag
gtagataaaaccacaaagatggggagaaaccagagcagaaaagctgaaaattctaaaaac
cagagtgcctcttctcctccaaaggatcacagctcctcgccagcaatggaacaaagctgg
atgaagaatgactttgacgagttgacagaagtaggcttcagaaggtcggtaataacaaac
ttctccgagctaaaggaggatgttcgaacccattgcaaggaagctaaaaaccttgaaaaa
agattagatgaatga

>gi568815578f:2209656_2440578|GENSCAN_predicted_peptide_2|217_aa
MAKTTIISIDSGKAFDKIQQCFMLKTLNKLGIDGTYLKIITAIYDKPPANIILNGQKLEA
FPLKTSTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLRNEEVKLSLFADDMIVYLEN
PIVSAQNLLKLINNFSKVSGYKINAQKSQAFLYTINRQTESQIMSELPFTIAAKRIKYPG
IQLTRDVKDLFKENYKPLLNEIKEFTQTNGRTFRAHG

>gi568815578f:2209656_2440578|GENSCAN_predicted_CDS_2|654_bp
atggcaaaaaccacgattatctcaatagattcaggaaaggcctttgacaaaattcaacag
tgcttcatgctaaaaactctcaataaactaggtattgatggaacatatctcaaaataata
acagctatttatgacaaacccccagccaatatcatactgaatgggcaaaaactggaagca
ttccctttgaaaaccagtacaagacaaggatgccctctctcaccactcctattcaacata
gtgttggaagttctagccagggcaatcaggcaagagaaagaaataaaaggtattcaatta
cgaaatgaggaagtcaagttgtccctgtttgcagatgacatgattgtatatctagaaaac
cccatcgtctcagcccaaaatctccttaagctgataaacaacttcagcaaagtctcagga
tacaaaatcaatgcgcaaaaatcacaagcattcctatacaccattaacagacaaacagag
agccaaatcatgagtgaactcccattcacaattgctgcaaagagaataaaatacccagga
attcaactaacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaat
gaaataaaagaatttacacaaacaaatggaagaacattccgtgctcatggatag

>gi568815578f:2209656_2440578|GENSCAN_predicted_peptide_3|864_aa
MAFSLMTALEEEPEKRQRKAKHGCCIQLSAVSAKKHISELPGSESGNISEQSRTSHSHPN
REQGSLVLPGLTLGVRKGRDDECKCELWSLQSSTVEWGDNDQGTWFLYTLASLSVKQDVY
KCLPYGVNELMHGQDIGLWDEWEEPLLLTQPQQTMHELCWSKEGTSGSPFCLTALGVQSI
NWQTAFNRQAHHTDKFSSQELILRRGQNFQVLMIMNKGLGSNERLEFIVSTGPYPSESAM
TKAVFPLSNGSSGGWSAVLQASNGNTLTISISSPASAPIGRYTMALQIFSQGGISSVKLG
TFILLFNPWLNVDSVFMGNHAEREEYVQEDAGIIFVGSTNRIGMIGWNFGQFEEDILSIC
LSILDRSLNFRRDAATDVASRNDPKYVGRVLSAMINSNDDNGVLAGNWSGTYTGGRDPRS
WNGSVEILKNWKKSGFSPVRYGQCWVFAGTLNTALRSLGIPSRVITNFNSAHDTDRNLSV
DVYYDPMGNPLDKGSDSVWNFHVWNEGWFVRSDLGPSYGGWQVLDATPQERSQGVFQCGP
ASVIGVREGDVQLNFDMPFIFAEVNADRITWLYDNTTGKQWKNSVNSHTIGRYISTKAVG
SNARMDVTDKYKYPEGSDQERQVFQKALGKLKPNTPFAATSSMGLETEEQEPSIIGKLKV
AGMLAVGKEVNLVLLLKNLSRDTKTVTVNMTAWTIIYNGTLVHEVWKDSATMSLDPEEEA
EHPIKISYAQYEKYLKSDNMIRITAVCKVPDESEVVVERDIILDNPTLTLEVLNEARVRK
PVNVQMLFSNPLDEPVRDCVLMVEGSGLLLGNLKIDVPTLGPKEGSRVRFDILPSRSGTK
QLLADFSCNKFPAIKAMLSIDVAE

>gi568815578f:2209656_2440578|GENSCAN_predicted_CDS_3|2595_bp
atggctttcagcctcatgacagccctggaagaggagcctgagaagaggcagaggaaggcg
aaacatggctgctgtatccagctgtcagcagtgtcagcaaagaagcacatctcagaacta
ccagggagtgagagtggtaacatctcggagcagtctcgcacatcccacagccaccctaac
agggagcaaggctcgttggtgctgccggggctcacgcttggtgtcagaaaaggcagagat
gatgagtgcaaatgcgagctctggagcctgcagtcctccactgtggagtggggtgacaac
gaccaaggcacctggtttctctacaccttggcttccttgtctgtaaaacaggacgtctac
aagtgcctgccttatggagttaatgagctaatgcacggacaagacattggtctctgggat
gaatgggaggagcctctactattgacacagccacagcaaacaatgcatgaactttgctgg
agcaaagaagggacttcaggttctcctttctgcctcacagctctaggagtccagagtatc
aactggcagacggccttcaaccgacaagcgcatcacacagacaagttctccagccaggag
ctcatcttgcggagaggccaaaacttccaggtcttaatgatcatgaacaaaggccttggc
tctaacgaaagactggagttcattgtctccacagggccttacccctcagagtcggccatg
acgaaggctgtgtttccactctccaatggcagtagtggtggctggagtgcggtgcttcag
gccagcaatggcaatactctgactatcagcatctccagtcctgccagcgcacccatagga
cggtacacaatggccctccagatcttctcccagggcggcatctcctctgtgaaacttggg
acgttcatactgctttttaacccctggctgaatgtggatagcgtctttatgggtaaccac
gctgagagagaagagtatgttcaggaagatgccggcatcatctttgtgggaagcacaaac
cgaattggcatgattggctggaactttggacagtttgaagaagacattctcagcatctgc
ctctcaatcttggataggagtctgaatttccgccgtgacgctgctactgatgtggccagc
agaaatgaccccaaatacgttggccgggtgctgagtgccatgatcaatagcaatgatgac
aatggtgtgcttgctgggaattggagcggcacttacaccggtggccgggacccaaggagc
tggaacggcagcgtggagatcctcaaaaattggaaaaaatctggcttcagcccagtccga
tatggccagtgctgggtctttgctgggaccctcaacacagcgctgcggtctttggggatt
ccttcccgggtgatcaccaacttcaactcagctcatgacacagaccgaaatctcagtgtg
gatgtgtactacgaccccatgggaaaccccctggacaagggtagtgatagcgtatggaat
ttccatgtctggaatgaaggctggtttgtgaggtctgacctgggcccctcgtacggtgga
tggcaggtgttggatgctaccccgcaggaaagaagccaaggggtgttccagtgcggcccc
gcttcggtcattggtgttcgagagggtgatgtgcagctgaacttcgacatgccctttatc
ttcgcggaggttaatgccgaccgcatcacctggctgtacgacaacaccactggcaaacag
tggaagaattccgtgaacagtcacaccattggcaggtacatcagcaccaaggcggtgggc
agcaatgctcgcatggacgtcacggacaagtacaagtacccagaaggctctgaccaggaa
agacaagtgttccaaaaggctttggggaaacttaaacccaacacgccatttgccgcgacg
tcttcaatgggtttggaaacagaggaacaggagcccagcatcatcgggaagctgaaggtc
gctggcatgctggcagtaggcaaagaagtcaacctggtcctactgctcaaaaacctgagc
agggatacgaagacagtgacagtgaacatgacagcctggaccatcatctacaacggcacg
cttgtacatgaagtgtggaaggactctgccacaatgtccctggaccctgaggaagaggca
gaacatcccataaagatctcgtacgctcagtatgagaagtacctgaagtcagacaacatg
atccggatcacagcggtgtgcaaggtcccagatgagtctgaggtggtggtggagcgggac
atcatcctggacaaccccaccttgaccctggaggtgctgaacgaggctcgtgtgcggaag
cctgtgaacgtgcagatgctcttctccaatccactggatgagccggtgagggactgcgtg
ctgatggtggagggaagcggcctgctgttgggtaacctgaagatcgacgtgccgacccta
gggcccaaggaggggtcccgggtccgttttgatatcctgccctcccggagtggcaccaag
caactgctcgccgacttctcctgcaacaagttccctgcaatcaaggccatgttgtccatc
gatgtagccgaatga

>gi568815578f:2209656_2440578|GENSCAN_predicted_peptide_4|21_aa
MILLHGSTVNLQSLIRTGVEL

>gi568815578f:2209656_2440578|GENSCAN_predicted_CDS_4|66_bp
atgattttactacatggatcaactgtgaatttacaaagcttaataaggactggtgtggag
ctctga

>gi568815578f:2209656_2440578|GENSCAN_predicted_peptide_5|117_aa
MRLRARKIQSSCALWVAPQASLLLGTPISRAPWVQQPQTWYRPWPGSSSGQSLQKARHEC
RPLKHKNALLRALQNRGVKGLPGIDIGVNTCSQFLKPHQYGKKDFGRIREKLTTAKP

>gi568815578f:2209656_2440578|GENSCAN_predicted_CDS_5|354_bp
atgaggctgagggccagaaaaatccagagcagctgtgccctgtgggtggcaccccaggcc
tctctgctgcttggaacccccatatccagagccccgtgggtccagcaaccacagacctgg
taccgcccatggcctggctcatcctcaggccagtcactacagaaagccagacatgaatgc
cgccccctaaaacacaaaaatgccttactgagagctttgcagaacagaggagtaaaaggg
cttcccggcatagatattggcgtgaacacctgcagtcagttcctgaagcctcaccagtac
ggcaagaaggacttcggaagaatcagagagaagttaacaacagcaaaaccttga

>gi568815578f:2209656_2440578|GENSCAN_predicted_peptide_6|939_aa
MVSQVTCSGETKHHARRTPKHSHGKIHMERNQGASTCIQHQFASHFPHSFINIFKKYLLS
TFHVSGAEDSLMNKTDTAPCPYAVDILEREGIRVTKVDWQRSRNGAAHHTQEYPCPELVV
RRGQSFSLTLELSRALDCEEILIFTMETGPRASEALHTKAVFQTSELERGEGWTAAREAQ
MEKTLTVSLASPPSAVIGRYLLSIRLSSHRKHSNRRLGEFVLLFNPCKARAPVHTGPDDC
FSEDDVFLASEEERQEYVLSDSGIIFRGVEKHIRAQGWNYGQVSRGTGQTRMWAGAWGAS
KHSLSGEQFEEDILNICLSILDRSPGHQNNPATDVSCRHNPIYVTRVISAMVNSNNDRGV
VQGQWQGKYGGGTSPLHWRGSVAILQKWLKGRYKPVKYGQCWVFAGVLCTVLRCLGIATR
VVSNFNSAHDTDQNLSVDKYVDSFGRTLEDLTEDSMWNFHVWNESWFARQDLGPSYNGWQ
VLDATPQEESEGVFRCGPASVTAIREGDVHLAHDGPFVFAEVNADYITWLWHEDESRERV
YSNTKKIGRCISTKAVGSDSRVDITDLYKYPEGSRKERQVYSKAVNRLFGVEASGRRIWI
RRAGGRCLWRDDLLEPATKPSIAGKFKVLEPPMLGHDLRLALCLANLTSRAQRVRVNLSG
ATILYTRKPVAEILHESHAVRLGPQEGSYQLIAIKNNTKLLFIYRVSEKRIPITISYSKY
KEDLTEDKKILLAAMCLVTKGEKLLVEKDITLEDFITIKVLGPAMVGVAVTVEVTVVNPL
IERVKDCALMVEGSGLLQEQLSIDVPTLEPQERASVQFDITPSKSGPRQLQVDLPQWKAE
AAPTANEKALLVSGRGREIDRRQLRSPRESVSGNVVLEITKKNVQAEEDRSFCSLPSVQP
TVGALTQMVHMLPPGTWILRDQNGEKLQKALKVVVVVVP

>gi568815578f:2209656_2440578|GENSCAN_predicted_CDS_6|2820_bp
atggtctctcaggtcacttgctcaggggaaactaagcaccatgccaggaggacacccaag
cattcccatggaaagatccacatggaaaggaaccaaggtgcctcaacctgtattcagcac
cagtttgccagccattttcctcattcattcattaatatatttaagaaatatttgttgagc
accttccatgtatcaggcgctgaagattcactaatgaacaaaacagacacagctccctgc
ccttatgcagttgatattcttgaaagggaagggatcagagtcaccaaggtggactggcag
cggtcgaggaatggcgctgcccaccacacccaggagtacccctgccctgagctggtggtt
cgcaggggccagtcgttcagcctcacgctggagctgagcagagccctggactgtgaggag
atcctcatcttcacgatggagacaggaccccgggcttctgaggccctccacaccaaagct
gtgttccagacatcggagctggagcggggtgagggctggacagcagcaagggaggctcag
atggagaaaactctgaccgtcagtctcgccagccctcccagtgctgtcattggccgctac
ctgctgagcatcaggctttcctctcaccgcaaacacagcaaccggaggctgggcgagttt
gttctccttttcaacccatgcaaggccagagccccagtccacaccgggcctgatgactgc
ttttcagaggacgatgtgtttctggcctcagaggaggagagacaggagtacgtgctcagc
gacagcggcatcatcttccgaggcgtggagaagcacatacgagcccagggctggaactac
gggcaggtctccaggggcacaggccagacaaggatgtgggctggggcatggggagcctct
aagcacagcctctctggggagcagtttgaggaggacatcctgaacatctgcctctccatc
ctggatcgaagccccggtcaccaaaacaacccagccaccgacgtgtcctgccgccacaac
cccatctacgtcaccagggtcatcagtgccatggtgaacagcaacaacgaccgaggtgtg
gtgcaaggacagtggcagggcaagtacggcggcggcaccagcccgctgcactggcgcggc
agcgtggccattctgcagaagtggctcaagggcaggtacaagccagtcaagtacggccag
tgctgggtcttcgccggagtcctgtgcacagtcctcaggtgcttggggatagccacacgg
gtcgtgtccaacttcaactcagcccacgacacagaccagaacctgagtgtggacaaatac
gtggactccttcgggcggaccctggaggacctgacagaagacagcatgtggaatttccat
gtctggaatgagagctggtttgcccggcaggacctaggcccctcttacaatggctggcag
gttctggatgccaccccccaggaggagagtgaaggtgtgttccggtgcggcccagcctca
gtcaccgccatccgcgagggtgatgtgcacctggctcacgatggccccttcgtgtttgcg
gaggtcaacgccgactacatcacctggctgtggcacgaggatgagagccgggagcgtgta
tactcaaacacgaagaagattgggagatgcatcagcaccaaggcggtgggcagtgactcc
cgcgtggacatcactgacctctacaagtatccggaagggtcccggaaagagaggcaggtg
tacagcaaggcggtgaacaggctgttcggcgtggaagcctctggaaggagaatctggatc
cgcagggctgggggtcgctgtctctggcgtgacgacctcctggagcctgccaccaagccc
agcatcgctggcaagttcaaggtgctagagcctcccatgctgggccacgacctgagactg
gccctgtgcttggccaacctcacctcccgggcccagcgggtgagggtcaacctgagcggt
gccaccatcctctatacccgcaagccagtggcagagatcctgcatgaatcccacgccgtg
aggctggggccgcaagaaggtagttatcagcttattgctattaaaaataacactaaactt
ttgtttatctacagagtgtcagagaagagaatcccaattacaatatcttactctaagtat
aaagaagacctgacagaggacaagaagatcctgttggctgccatgtgccttgtcaccaaa
ggagagaagcttctggtggagaaggacattactctagaggacttcatcaccatcaaggtt
ctgggcccagccatggtgggagtggcagttacagtggaagtgacagtagtcaaccccctc
atagagagagtgaaggactgtgcgctgatggtggagggcagcggccttctccaggaacag
ctcagcatcgacgtgcctaccctggagcctcaggagagggcctcagtccagtttgacatc
accccctccaaaagtggcccaaggcagctgcaggtggaccttccccagtggaaagcagaa
gccgccccaacagccaatgagaaagccctgcttgtgagtgggagaggtagagaaattgac
agaagacagcttagaagtccaagggagagtgtgagtgggaatgtggttttggaaattaca
aagaaaaatgtgcaggctgaggaagacagatctttctgcagcctgccctcagtacagccc
acagtgggtgccttgactcagatggtgcatatgctccctcctggaacttggatcttaaga
gatcagaatggagagaagcttcagaaggcactaaaggtggtggtggtggtagtgccctag