Result of FASTA (ccds) for
pF1KA0008
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0008, 846 aa
1>>>pF1KA0008 846 - 846 aa - 846 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0221+/-0.00122; mu= 7.7783+/- 0.073
mean_var=124.6430+/-24.535, 0's: 0 Z-trim(105.2): 39 B-trim: 6 in 1/50
Lambda= 0.114879
statistics sampled from 8291 (8316) to 8291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.255), width: 16
Scan time: 3.850
The best scores are: opt bits E(32554)
CCDS9723.1 DLGAP5 gene_id:9787|Hs108|chr14 ( 846) 5544 930.8 0
CCDS53897.1 DLGAP5 gene_id:9787|Hs108|chr14 ( 842) 5263 884.3 0
>>CCDS9723.1 DLGAP5 gene_id:9787|Hs108|chr14 (846 aa)
initn: 5544 init1: 5544 opt: 5544 Z-score: 4971.0 bits: 930.8 E(32554): 0
Smith-Waterman score: 5544; 100.0% identity (100.0% similar) in 846 aa overlap (1-846:1-846)
10 20 30 40 50 60
pF1KA0 MSSSHFASRHRKDISTEMIRTKIAHRKSLSQKENRHKEYERNRHFGLKDVNIPTLEGRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MSSSHFASRHRKDISTEMIRTKIAHRKSLSQKENRHKEYERNRHFGLKDVNIPTLEGRIL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 VELDETSQGLVPEKTNVKPRAMKTILGDQRKQMLQKYKEEKQLQKLKEQREKAKRGIFKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VELDETSQGLVPEKTNVKPRAMKTILGDQRKQMLQKYKEEKQLQKLKEQREKAKRGIFKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 GRYRPDMPCFLLSNQNAVKAEPKKAIPSSVRITRSKAKDQMEQTKIDNESDVRAIRPGPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 GRYRPDMPCFLLSNQNAVKAEPKKAIPSSVRITRSKAKDQMEQTKIDNESDVRAIRPGPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 QTSEKKVSDKEKKVVQPVMPTSLRMTRSATQAAKQVPRTVSSTTARKPVTRAANENEPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 QTSEKKVSDKEKKVVQPVMPTSLRMTRSATQAAKQVPRTVSSTTARKPVTRAANENEPEG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 KVPSKGRPAKNVETKPDKGISCKVDSEENTLNSQTNATSGMNPDGVLSKMENLPEINTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 KVPSKGRPAKNVETKPDKGISCKVDSEENTLNSQTNATSGMNPDGVLSKMENLPEINTAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 IKGKNSFAPKDFMFQPLDGLKTYQVTPMTPRSANAFLTPSYTWTPLKTEVDESQATKEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IKGKNSFAPKDFMFQPLDGLKTYQVTPMTPRSANAFLTPSYTWTPLKTEVDESQATKEIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 AQKCKTYSTKTIQQDSNKLPCPLGPLTVWHEEHVLNKNEATTKNLNGLPIKEVPSLERNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AQKCKTYSTKTIQQDSNKLPCPLGPLTVWHEEHVLNKNEATTKNLNGLPIKEVPSLERNE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 GRIAQPHHGVPYFRNILQSETEKLTSHCFEWDRKLELDIPDDAKDLIRTAVGQTRLLMKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 GRIAQPHHGVPYFRNILQSETEKLTSHCFEWDRKLELDIPDDAKDLIRTAVGQTRLLMKE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 RFKQFEGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQVNNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RFKQFEGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQVNNN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 MNHNMNKNVFRKKVVSGIASKPKQDDAGRIAARNRLAAIKNAMRERIRQEECAETAVSVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MNHNMNKNVFRKKVVSGIASKPKQDDAGRIAARNRLAAIKNAMRERIRQEECAETAVSVI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 PKEVDKIVFDAGFFRVESPVKLFSGLSVSSEGPSQRLGTPKSVNKAVSQSRNEMGIPQQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 PKEVDKIVFDAGFFRVESPVKLFSGLSVSSEGPSQRLGTPKSVNKAVSQSRNEMGIPQQT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 TSPENAGPQNTKSEHVKKTLFLSIPESRSSIEDAQCPGLPDLIEENHVVNKTDLKVDCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 TSPENAGPQNTKSEHVKKTLFLSIPESRSSIEDAQCPGLPDLIEENHVVNKTDLKVDCLS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SERMSLPLLAGGVADDINTNKKEGISDVVEGMELNSSITSQDVLMSSPEKNTASQNSILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SERMSLPLLAGGVADDINTNKKEGISDVVEGMELNSSITSQDVLMSSPEKNTASQNSILE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 EGETKISQSELFDNKSLTTECHLLDSPGLNCSNPFTQLERRHQEHARHISFGGNLITFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 EGETKISQSELFDNKSLTTECHLLDSPGLNCSNPFTQLERRHQEHARHISFGGNLITFSP
790 800 810 820 830 840
pF1KA0 LQPGEF
::::::
CCDS97 LQPGEF
>>CCDS53897.1 DLGAP5 gene_id:9787|Hs108|chr14 (842 aa)
initn: 5261 init1: 5261 opt: 5263 Z-score: 4719.4 bits: 884.3 E(32554): 0
Smith-Waterman score: 5263; 99.6% identity (99.8% similar) in 811 aa overlap (1-811:1-810)
10 20 30 40 50 60
pF1KA0 MSSSHFASRHRKDISTEMIRTKIAHRKSLSQKENRHKEYERNRHFGLKDVNIPTLEGRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSSSHFASRHRKDISTEMIRTKIAHRKSLSQKENRHKEYERNRHFGLKDVNIPTLEGRIL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 VELDETSQGLVPEKTNVKPRAMKTILGDQRKQMLQKYKEEKQLQKLKEQREKAKRGIFKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VELDETSQGLVPEKTNVKPRAMKTILGDQRKQMLQKYKEEKQLQKLKEQREKAKRGIFKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 GRYRPDMPCFLLSNQNAVKAEPKKAIPSSVRITRSKAKDQMEQTKIDNESDVRAIRPGPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GRYRPDMPCFLLSNQNAVKAEPKKAIPSSVRITRSKAKDQMEQTKIDNESDVRAIRPGPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 QTSEKKVSDKEKKVVQPVMPTSLRMTRSATQAAKQVPRTVSSTTARKPVTRAANENEPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QTSEKKVSDKEKKVVQPVMPTSLRMTRSATQAAKQVPRTVSSTTARKPVTRAANENEPEG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 KVPSKGRPAKNVETKPDKGISCKVDSEENTLNSQTNATSGMNPDGVLSKMENLPEINTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KVPSKGRPAKNVETKPDKGISCKVDSEENTLNSQTNATSGMNPDGVLSKMENLPEINTAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 IKGKNSFAPKDFMFQPLDGLKTYQVTPMTPRSANAFLTPSYTWTPLKTEVDESQATKEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IKGKNSFAPKDFMFQPLDGLKTYQVTPMTPRSANAFLTPSYTWTPLKTEVDESQATKEIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 AQKCKTYSTKTIQQDSNKLPCPLGPLTVWHEEHVLNKNEATTKNLNGLPIKEVPSLERNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AQKCKTYSTKTIQQDSNKLPCPLGPLTVWHEEHVLNKNEATTKNLNGLPIKEVPSLERNE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 GRIAQPHHGVPYFRNILQSETEKLTSHCFEWDRKLELDIPDDAKDLIRTAVGQTRLLMKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GRIAQPHHGVPYFRNILQSETEKLTSHCFEWDRKLELDIPDDAKDLIRTAVGQTRLLMKE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 RFKQFEGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQVNNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RFKQFEGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQVNNN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 MNHNMNKNVFRKKVVSGIASKPKQDDAGRIAARNRLAAIKNAMRERIRQEECAETAVSVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MNHNMNKNVFRKKVVSGIASKPKQDDAGRIAARNRLAAIKNAMRERIRQEECAETAVSVI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 PKEVDKIVFDAGFFRVESPVKLFSGLSVSSEGPSQRLGTPKSVNKAVSQSRNEMGIPQQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PKEVDKIVFDAGFFRVESPVKLFSGLSVSSEGPSQRLGTPKSVNKAVSQSRNEMGIPQQT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 TSPENAGPQNTKSEHVKKTLFLSIPESRSSIEDAQCPGLPDLIEENHVVNKTDLKVDCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TSPENAGPQNTKSEHVKKTLFLSIPESRSSIEDAQCPGLPDLIEENHVVNKTDLKVDCLS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SERMSLPLLAGGVADDINTNKKEGISDVVEGMELNSSITSQDVLMSSPEKNTASQNSILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SERMSLPLLAGGVADDINTNKKEGISDVVEGMELNSSITSQDVLMSSPEKNTASQNSILE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 EGETKISQSELFDNKSLTTECHLLDSPGLNCSNPFTQLERRHQEHARHISFGGNLITFSP
:::::::::::::::::::::::::: : .:
CCDS53 EGETKISQSELFDNKSLTTECHLLDSVG-SCYVARAGLEVLGSSDPTTSASRVAGTTARS
790 800 810 820 830
pF1KA0 LQPGEF
CCDS53 KLQ
840
846 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:18:30 2016 done: Fri Nov 4 00:18:30 2016
Total Scan time: 3.850 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]