FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0011, 911 aa
  1>>>pF1KA0011 911 - 911 aa - 911 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1340+/-0.000945; mu= 4.5836+/- 0.057
 mean_var=230.5983+/-47.029, 0's: 0 Z-trim(113.8): 16  B-trim: 0 in 0/52
 Lambda= 0.084459
 statistics sampled from 14407 (14414) to 14407 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.443), width:  16
 Scan time:  4.370

The best scores are:                                      opt bits E(32554)
CCDS1749.1 GTF3C2 gene_id:2976|Hs108|chr2          ( 911) 6365 789.1       0


>>CCDS1749.1 GTF3C2 gene_id:2976|Hs108|chr2               (911 aa)
 initn: 6365 init1: 6365 opt: 6365  Z-score: 4203.9  bits: 789.1 E(32554):    0
Smith-Waterman score: 6365; 100.0% identity (100.0% similar) in 911 aa overlap (1-911:1-911)

               10        20        30        40        50        60
pF1KA0 MDTCGVGYVALGEAGPVGNMTVVDSPGQEVLNQLDVKTSSEMTSAEASVEMSLPTPLPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MDTCGVGYVALGEAGPVGNMTVVDSPGQEVLNQLDVKTSSEMTSAEASVEMSLPTPLPGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 EDSPDQRRLPPEQESLSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EDSPDQRRLPPEQESLSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFETPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFETPSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ERPRRRAAQVALLYLQELAEELSTALPAPVSCPEGPKVSSPTKPKKIRQPAACPGGEEVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 ERPRRRAAQVALLYLQELAEELSTALPAPVSCPEGPKVSSPTKPKKIRQPAACPGGEEVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 GAPRDEDFFLQVEAEDVEESEGPSESSSEPEPVVPRSTPRGSTSGKQKPHCRGMAPNGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GAPRDEDFFLQVEAEDVEESEGPSESSSEPEPVVPRSTPRGSTSGKQKPHCRGMAPNGLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 NHIMAPVWKCLHLTKDFREQKHSYWEFAEWIPLAWKWHLLSELEAAPYLPQEEKSPLFSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 NHIMAPVWKCLHLTKDFREQKHSYWEFAEWIPLAWKWHLLSELEAAPYLPQEEKSPLFSV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 QREGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGAGASQYVALFSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QREGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGAGASQYVALFSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 PDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGCIWDLKFCPSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGCIWDLKFCPSGA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 WELPGTPRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVKPAIYKVQCVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 WELPGTPRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVKPAIYKVQCVAT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 LQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 LKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINSIKRFLSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINSIKRFLSTE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 LAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 AAGDISGELIAAILPDMALNPINVKRPVERRFPIYKADLIPYQDSPEGPDHSSASSGVPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AAGDISGELIAAILPDMALNPINVKRPVERRFPIYKADLIPYQDSPEGPDHSSASSGVPN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 PPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 RFSPNLDSYGWLVSGGQSGLVRIHFVRGLASPLGHRMQLESRAHFNAMFQPSSPTRRPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 RFSPNLDSYGWLVSGGQSGLVRIHFVRGLASPLGHRMQLESRAHFNAMFQPSSPTRRPGF
              850       860       870       880       890       900

              910 
pF1KA0 SPTSHRLLPTP
       :::::::::::
CCDS17 SPTSHRLLPTP
              910 




911 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:19:12 2016 done: Fri Nov  4 00:19:13 2016
 Total Scan time:  4.370 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]