FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0038, 228 aa
  1>>>pF1KA0038 228 - 228 aa - 228 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8639+/-0.00072; mu= 14.2349+/- 0.044
 mean_var=129.6732+/-26.869, 0's: 0 Z-trim(113.8): 43  B-trim: 0 in 0/50
 Lambda= 0.112629
 statistics sampled from 14389 (14429) to 14389 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.443), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS5565.1 EIF4H gene_id:7458|Hs108|chr7           ( 228) 1568 265.0 2.9e-71
CCDS5564.1 EIF4H gene_id:7458|Hs108|chr7           ( 248)  946 163.9 8.2e-41


>>CCDS5565.1 EIF4H gene_id:7458|Hs108|chr7                (228 aa)
 initn: 1568 init1: 1568 opt: 1568  Z-score: 1392.8  bits: 265.0 E(32554): 2.9e-71
Smith-Waterman score: 1568; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)

               10        20        30        40        50        60
pF1KA0 MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 QDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREP
              130       140       150       160       170       180

              190       200       210       220        
pF1KA0 TEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPREEVVQKEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPREEVVQKEQE
              190       200       210       220        

>>CCDS5564.1 EIF4H gene_id:7458|Hs108|chr7                (248 aa)
 initn: 956 init1: 933 opt: 946  Z-score: 846.2  bits: 163.9 E(32554): 8.2e-41
Smith-Waterman score: 1518; 91.9% identity (91.9% similar) in 248 aa overlap (1-228:1-248)

               10        20        30        40        50        60
pF1KA0 MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK
               70        80        90       100       110       120

              130                           140       150       160
pF1KA0 QDKGGFGFRKGGPDDRG--------------------FRDDFLGGRGGSRPGDRRTGPPM
       :::::::::::::::::                    :::::::::::::::::::::::
CCDS55 QDKGGFGFRKGGPDDRGMGSSRESRGGWDSRDDFNSGFRDDFLGGRGGSRPGDRRTGPPM
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KA0 GSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPRE
              190       200       210       220       230       240

               
pF1KA0 EVVQKEQE
       ::::::::
CCDS55 EVVQKEQE
               




228 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:27:58 2016 done: Thu Nov  3 19:27:58 2016
 Total Scan time:  2.510 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]