FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0040, 153 aa
  1>>>pF1KA0040 153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9204+/-0.000278; mu= 14.8656+/- 0.017
 mean_var=65.9106+/-13.136, 0's: 0 Z-trim(120.0): 2  B-trim: 1441 in 2/50
 Lambda= 0.157978
 statistics sampled from 34662 (34664) to 34662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.406), width:  16
 Scan time:  5.240

The best scores are:                                      opt bits E(85289)
XP_016858398 (OMIM: 616696) PREDICTED: uncharacter ( 153) 1088 255.6 2.3e-68
XP_016858399 (OMIM: 616696) PREDICTED: uncharacter ( 153) 1088 255.6 2.3e-68


>>XP_016858398 (OMIM: 616696) PREDICTED: uncharacterized  (153 aa)
 initn: 1088 init1: 1088 opt: 1088  Z-score: 1348.4  bits: 255.6 E(85289): 2.3e-68
Smith-Waterman score: 1088; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KA0 MHYVHVHRVTTQPRNKPQTKCPSGGQSQGPRGQFLDTVLAAMCPIAMLLTADPGMPPTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MHYVHVHRVTTQPRNKPQTKCPSGGQSQGPRGQFLDTVLAAMCPIAMLLTADPGMPPTCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 WHTPHAKHKEHLSIHLNMVPKCVHMHVTHTHTNSGSRYVGKYILLIKWSLAMYFVQGSTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WHTPHAKHKEHLSIHLNMVPKCVHMHVTHTHTNSGSRYVGKYILLIKWSLAMYFVQGSTL
               70        80        90       100       110       120

              130       140       150   
pF1KA0 STVTKMSHGKALPDSDTYIQFPNQQGPHTPSIP
       :::::::::::::::::::::::::::::::::
XP_016 STVTKMSHGKALPDSDTYIQFPNQQGPHTPSIP
              130       140       150   

>>XP_016858399 (OMIM: 616696) PREDICTED: uncharacterized  (153 aa)
 initn: 1088 init1: 1088 opt: 1088  Z-score: 1348.4  bits: 255.6 E(85289): 2.3e-68
Smith-Waterman score: 1088; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KA0 MHYVHVHRVTTQPRNKPQTKCPSGGQSQGPRGQFLDTVLAAMCPIAMLLTADPGMPPTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MHYVHVHRVTTQPRNKPQTKCPSGGQSQGPRGQFLDTVLAAMCPIAMLLTADPGMPPTCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 WHTPHAKHKEHLSIHLNMVPKCVHMHVTHTHTNSGSRYVGKYILLIKWSLAMYFVQGSTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WHTPHAKHKEHLSIHLNMVPKCVHMHVTHTHTNSGSRYVGKYILLIKWSLAMYFVQGSTL
               70        80        90       100       110       120

              130       140       150   
pF1KA0 STVTKMSHGKALPDSDTYIQFPNQQGPHTPSIP
       :::::::::::::::::::::::::::::::::
XP_016 STVTKMSHGKALPDSDTYIQFPNQQGPHTPSIP
              130       140       150   




153 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:20:14 2016 done: Sat Nov  5 17:20:15 2016
 Total Scan time:  5.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]