FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0060, 289 aa
  1>>>pF1KA0060 289 - 289 aa - 289 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4940+/-0.000852; mu= 13.6028+/- 0.051
 mean_var=58.0314+/-11.624, 0's: 0 Z-trim(104.8): 17  B-trim: 21 in 1/50
 Lambda= 0.168362
 statistics sampled from 8064 (8070) to 8064 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.248), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS4272.1 GNPDA1 gene_id:10007|Hs108|chr5         ( 289) 1927 476.4 1.1e-134
CCDS3469.1 GNPDA2 gene_id:132789|Hs108|chr4        ( 276) 1656 410.6 6.7e-115
CCDS59472.1 GNPDA2 gene_id:132789|Hs108|chr4       ( 206) 1264 315.3 2.3e-86
CCDS59473.1 GNPDA2 gene_id:132789|Hs108|chr4       ( 242) 1237 308.8 2.6e-84


>>CCDS4272.1 GNPDA1 gene_id:10007|Hs108|chr5              (289 aa)
 initn: 1927 init1: 1927 opt: 1927  Z-score: 2531.7  bits: 476.4 E(32554): 1.1e-134
Smith-Waterman score: 1927; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
              190       200       210       220       230       240

              250       260       270       280         
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
              250       260       270       280         

>>CCDS3469.1 GNPDA2 gene_id:132789|Hs108|chr4             (276 aa)
 initn: 1658 init1: 1637 opt: 1656  Z-score: 2176.3  bits: 410.6 E(32554): 6.7e-115
Smith-Waterman score: 1656; 88.0% identity (97.4% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
       :.:.::..:. ::::::::: ::::::.:: ..::::::::::::::::::::::.::: 
CCDS34 MRLVILDNYDLASEWAAKYICNRIIQFKPGQDRYFTLGLPTGSTPLGCYKKLIEYHKNGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
       :::::::::::::::::::.:::::::.::::::::::: :.:.:::::::.::::::::
CCDS34 LSFKYVKTFNMDEYVGLPRNHPESYHSYMWNNFFKHIDIDPNNAHILDGNAADLQAECDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
       ::.::: ::::.::::::::::::::::::::::::::.::::::::::::..:::.:.:
CCDS34 FENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILANAKYFDGDLSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS34 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTIFVCD
              190       200       210       220       230       240

              250       260       270       280         
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
       :::::::.::::::::::: :::::::::.:.:.               
CCDS34 EDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN             
              250       260       270                   

>>CCDS59472.1 GNPDA2 gene_id:132789|Hs108|chr4            (206 aa)
 initn: 1285 init1: 1264 opt: 1264  Z-score: 1663.9  bits: 315.3 E(32554): 2.3e-86
Smith-Waterman score: 1264; 90.2% identity (98.5% similar) in 204 aa overlap (71-274:1-204)

               50        60        70        80        90       100
pF1KA0 TGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIH
                                     :::::::::.:::::::.::::::::::: 
CCDS59                               MDEYVGLPRNHPESYHSYMWNNFFKHIDID
                                             10        20        30

              110       120       130       140       150       160
pF1KA0 PENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVK
       :.:.:::::::.::::::::::.::: ::::.::::::::::::::::::::::::::.:
CCDS59 PNNAHILDGNAADLQAECDAFENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLK
               40        50        60        70        80        90

              170       180       190       200       210       220
pF1KA0 TLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV
       :::::::::::..:::.:.:::::::::::::::::::::::::::::::::::::::::
CCDS59 TLAMDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV
              100       110       120       130       140       150

              230       240       250       260       270       280
pF1KA0 NHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKS
       :::::::::::::::.:::::::::::.::::::::::: :::::::::.:.:.      
CCDS59 NHMWTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN    
              160       170       180       190       200          

                
pF1KA0 QSSKKPYSD

>>CCDS59473.1 GNPDA2 gene_id:132789|Hs108|chr4            (242 aa)
 initn: 1454 init1: 1230 opt: 1237  Z-score: 1627.3  bits: 308.8 E(32554): 2.6e-84
Smith-Waterman score: 1361; 76.3% identity (85.4% similar) in 274 aa overlap (1-274:1-240)

               10        20        30        40        50        60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
       :.:.::..:. ::::::::: ::::::.:: ..:::::::::                  
CCDS59 MRLVILDNYDLASEWAAKYICNRIIQFKPGQDRYFTLGLPTG------------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
                       :::.:::::::.::::::::::: :.:.:::::::.::::::::
CCDS59 ----------------LPRNHPESYHSYMWNNFFKHIDIDPNNAHILDGNAADLQAECDA
                             50        60        70        80      

              130       140       150       160       170       180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
       ::.::: ::::.::::::::::::::::::::::::::.::::::::::::..:::.:.:
CCDS59 FENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILANAKYFDGDLSK
         90       100       110       120       130       140      

              190       200       210       220       230       240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS59 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTIFVCD
        150       160       170       180       190       200      

              250       260       270       280         
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
       :::::::.::::::::::: :::::::::.:.:.               
CCDS59 EDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN             
        210       220       230       240               




289 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 17:58:22 2016 done: Wed Nov  2 17:58:23 2016
 Total Scan time:  1.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]