Result of FASTA (omim) for
pF1KA0060
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0060, 289 aa
1>>>pF1KA0060 289 - 289 aa - 289 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0668+/-0.000382; mu= 16.3618+/- 0.024
mean_var=60.2494+/-12.251, 0's: 0 Z-trim(111.5): 16 B-trim: 133 in 1/52
Lambda= 0.165233
statistics sampled from 20058 (20066) to 20058 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.235), width: 16
Scan time: 5.900
The best scores are: opt bits E(85289)
XP_006714810 (OMIM: 601798) PREDICTED: glucosamine ( 289) 1927 467.9 1e-131
NP_005462 (OMIM: 601798) glucosamine-6-phosphate i ( 289) 1927 467.9 1e-131
XP_011535839 (OMIM: 601798) PREDICTED: glucosamine ( 289) 1927 467.9 1e-131
XP_005268405 (OMIM: 601798) PREDICTED: glucosamine ( 318) 1927 467.9 1.1e-131
NP_612208 (OMIM: 613222) glucosamine-6-phosphate i ( 276) 1656 403.3 2.7e-112
NP_001257810 (OMIM: 613222) glucosamine-6-phosphat ( 206) 1264 309.8 2.9e-84
NP_001257809 (OMIM: 613222) glucosamine-6-phosphat ( 242) 1237 303.4 2.8e-82
>>XP_006714810 (OMIM: 601798) PREDICTED: glucosamine-6-p (289 aa)
initn: 1927 init1: 1927 opt: 1927 Z-score: 2485.8 bits: 467.9 E(85289): 1e-131
Smith-Waterman score: 1927; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)
10 20 30 40 50 60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
190 200 210 220 230 240
250 260 270 280
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
250 260 270 280
>>NP_005462 (OMIM: 601798) glucosamine-6-phosphate isome (289 aa)
initn: 1927 init1: 1927 opt: 1927 Z-score: 2485.8 bits: 467.9 E(85289): 1e-131
Smith-Waterman score: 1927; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)
10 20 30 40 50 60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
190 200 210 220 230 240
250 260 270 280
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
250 260 270 280
>>XP_011535839 (OMIM: 601798) PREDICTED: glucosamine-6-p (289 aa)
initn: 1927 init1: 1927 opt: 1927 Z-score: 2485.8 bits: 467.9 E(85289): 1e-131
Smith-Waterman score: 1927; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)
10 20 30 40 50 60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
190 200 210 220 230 240
250 260 270 280
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
250 260 270 280
>>XP_005268405 (OMIM: 601798) PREDICTED: glucosamine-6-p (318 aa)
initn: 1927 init1: 1927 opt: 1927 Z-score: 2485.2 bits: 467.9 E(85289): 1.1e-131
Smith-Waterman score: 1927; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:30-318)
10 20 30
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGP
:::::::::::::::::::::::::::::::
XP_005 MSSFWSDYLFPFVLWGKLKTQRGSQSKDKMKLIILEHYSQASEWAAKYIRNRIIQFNPGP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KA0 EKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KA0 NFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGS
130 140 150 160 170 180
160 170 180 190 200 210
pF1KA0 SLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KA0 LYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYS
250 260 270 280 290 300
280
pF1KA0 IKEKETEKSQSSKKPYSD
::::::::::::::::::
XP_005 IKEKETEKSQSSKKPYSD
310
>>NP_612208 (OMIM: 613222) glucosamine-6-phosphate isome (276 aa)
initn: 1658 init1: 1637 opt: 1656 Z-score: 2137.0 bits: 403.3 E(85289): 2.7e-112
Smith-Waterman score: 1656; 88.0% identity (97.4% similar) in 274 aa overlap (1-274:1-274)
10 20 30 40 50 60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
:.:.::..:. ::::::::: ::::::.:: ..::::::::::::::::::::::.:::
NP_612 MRLVILDNYDLASEWAAKYICNRIIQFKPGQDRYFTLGLPTGSTPLGCYKKLIEYHKNGH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
:::::::::::::::::::.:::::::.::::::::::: :.:.:::::::.::::::::
NP_612 LSFKYVKTFNMDEYVGLPRNHPESYHSYMWNNFFKHIDIDPNNAHILDGNAADLQAECDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
::.::: ::::.::::::::::::::::::::::::::.::::::::::::..:::.:.:
NP_612 FENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILANAKYFDGDLSK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_612 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTIFVCD
190 200 210 220 230 240
250 260 270 280
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
:::::::.::::::::::: :::::::::.:.:.
NP_612 EDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN
250 260 270
>>NP_001257810 (OMIM: 613222) glucosamine-6-phosphate is (206 aa)
initn: 1285 init1: 1264 opt: 1264 Z-score: 1633.9 bits: 309.8 E(85289): 2.9e-84
Smith-Waterman score: 1264; 90.2% identity (98.5% similar) in 204 aa overlap (71-274:1-204)
50 60 70 80 90 100
pF1KA0 TGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIH
:::::::::.:::::::.:::::::::::
NP_001 MDEYVGLPRNHPESYHSYMWNNFFKHIDID
10 20 30
110 120 130 140 150 160
pF1KA0 PENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVK
:.:.:::::::.::::::::::.::: ::::.::::::::::::::::::::::::::.:
NP_001 PNNAHILDGNAADLQAECDAFENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLK
40 50 60 70 80 90
170 180 190 200 210 220
pF1KA0 TLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV
:::::::::::..:::.:.:::::::::::::::::::::::::::::::::::::::::
NP_001 TLAMDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV
100 110 120 130 140 150
230 240 250 260 270 280
pF1KA0 NHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKS
:::::::::::::::.:::::::::::.::::::::::: :::::::::.:.:.
NP_001 NHMWTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN
160 170 180 190 200
pF1KA0 QSSKKPYSD
>>NP_001257809 (OMIM: 613222) glucosamine-6-phosphate is (242 aa)
initn: 1454 init1: 1230 opt: 1237 Z-score: 1598.0 bits: 303.4 E(85289): 2.8e-82
Smith-Waterman score: 1361; 76.3% identity (85.4% similar) in 274 aa overlap (1-274:1-240)
10 20 30 40 50 60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
:.:.::..:. ::::::::: ::::::.:: ..:::::::::
NP_001 MRLVILDNYDLASEWAAKYICNRIIQFKPGQDRYFTLGLPTG------------------
10 20 30 40
70 80 90 100 110 120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
:::.:::::::.::::::::::: :.:.:::::::.::::::::
NP_001 ----------------LPRNHPESYHSYMWNNFFKHIDIDPNNAHILDGNAADLQAECDA
50 60 70 80
130 140 150 160 170 180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
::.::: ::::.::::::::::::::::::::::::::.::::::::::::..:::.:.:
NP_001 FENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILANAKYFDGDLSK
90 100 110 120 130 140
190 200 210 220 230 240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTIFVCD
150 160 170 180 190 200
250 260 270 280
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
:::::::.::::::::::: :::::::::.:.:.
NP_001 EDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN
210 220 230 240
289 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 17:58:23 2016 done: Wed Nov 2 17:58:24 2016
Total Scan time: 5.900 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]