FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0089, 351 aa
  1>>>pF1KA0089 351 - 351 aa - 351 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6619+/-0.00102; mu= 13.6478+/- 0.061
 mean_var=55.9099+/-11.053, 0's: 0 Z-trim(102.5): 31  B-trim: 0 in 0/49
 Lambda= 0.171526
 statistics sampled from 6976 (6982) to 6976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.214), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS33729.1 GPD1L gene_id:23171|Hs108|chr3         ( 351) 2295 576.3 1.3e-164
CCDS8799.1 GPD1 gene_id:2819|Hs108|chr12           ( 349) 1733 437.2 9.6e-123
CCDS58229.1 GPD1 gene_id:2819|Hs108|chr12          ( 326) 1292 328.1 6.4e-90


>>CCDS33729.1 GPD1L gene_id:23171|Hs108|chr3              (351 aa)
 initn: 2295 init1: 2295 opt: 2295  Z-score: 3068.7  bits: 576.3 E(32554): 1.3e-164
Smith-Waterman score: 2295; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KA0 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KA0 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
              310       320       330       340       350 

>>CCDS8799.1 GPD1 gene_id:2819|Hs108|chr12                (349 aa)
 initn: 1733 init1: 1733 opt: 1733  Z-score: 2317.1  bits: 437.2 E(32554): 9.6e-123
Smith-Waterman score: 1733; 71.8% identity (90.5% similar) in 347 aa overlap (4-350:2-348)

               10        20        30        40        50        60
pF1KA0 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
          :  :::::::::::::.:::.:.:. .: .:   : :::::: ..:.:::.:::..:
CCDS87   MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQH
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KA0 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
       :::::::::::: ::::. .. .:..:::.:.::.::::: .:::.. :..  .: ::.:
CCDS87 ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KA0 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
       :::.::::.::::::..: :..:: .:::::::::.::: ::::::::: :   .: :.:
CCDS87 IKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLK
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KA0 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
       ::.::::::::::...::::.::::::.:::::::::::  :::::::::::::::::::
CCDS87 ELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF
      180       190       200       210       220       230        

              250       260       270       280       290       300
pF1KA0 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
       :..::.: ::.::::::::::::::::::::::.::::::::::.::.::::.:::::::
CCDS87 AKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQ
      240       250       260       270       280       290        

              310       320       330       340       350 
pF1KA0 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
       ::.:. :.: ::..:::.:::::: :::..:::..:: :.. :::.:::: 
CCDS87 GPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
      300       310       320       330       340         

>>CCDS58229.1 GPD1 gene_id:2819|Hs108|chr12               (326 aa)
 initn: 1292 init1: 1292 opt: 1292  Z-score: 1727.8  bits: 328.1 E(32554): 6.4e-90
Smith-Waterman score: 1581; 68.3% identity (84.4% similar) in 347 aa overlap (4-350:2-325)

               10        20        30        40        50        60
pF1KA0 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
          :  :::::::::::::.:::.:.:. .: .:   : :::::: ..:.:::.:::..:
CCDS58   MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQH
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KA0 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
       :::::::::::: ::                       :: .:::.. :..  .: ::.:
CCDS58 ENVKYLPGHKLPPNV-----------------------FIGKICDQLKGHLKANATGISL
       60        70                               80        90     

              130       140       150       160       170       180
pF1KA0 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
       :::.::::.::::::..: :..:: .:::::::::.::: ::::::::: :   .: :.:
CCDS58 IKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLK
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KA0 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
       ::.::::::::::...::::.::::::.:::::::::::  :::::::::::::::::::
CCDS58 ELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KA0 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
       :..::.: ::.::::::::::::::::::::::.::::::::::.::.::::.:::::::
CCDS58 AKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQ
         220       230       240       250       260       270     

              310       320       330       340       350 
pF1KA0 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
       ::.:. :.: ::..:::.:::::: :::..:::..:: :.. :::.:::: 
CCDS58 GPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
         280       290       300       310       320      




351 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:00:18 2016 done: Wed Nov  2 18:00:18 2016
 Total Scan time:  2.520 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]