Result of FASTA (omim) for
pF1KA0089
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0089, 351 aa
1>>>pF1KA0089 351 - 351 aa - 351 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6567+/-0.000459; mu= 13.7178+/- 0.028
mean_var=60.9405+/-12.422, 0's: 0 Z-trim(109.1): 68 B-trim: 962 in 1/48
Lambda= 0.164294
statistics sampled from 17217 (17226) to 17217 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.564), E-opt: 0.2 (0.202), width: 16
Scan time: 7.230
The best scores are: opt bits E(85289)
NP_055956 (OMIM: 611777,611778) glycerol-3-phospha ( 351) 2295 552.9 3.8e-157
NP_005267 (OMIM: 138420,614480) glycerol-3-phospha ( 349) 1733 419.7 4.7e-117
XP_006713131 (OMIM: 611777,611778) PREDICTED: glyc ( 304) 1496 363.5 3.4e-100
NP_001244128 (OMIM: 138420,614480) glycerol-3-phos ( 326) 1292 315.2 1.3e-85
>>NP_055956 (OMIM: 611777,611778) glycerol-3-phosphate d (351 aa)
initn: 2295 init1: 2295 opt: 2295 Z-score: 2942.3 bits: 552.9 E(85289): 3.8e-157
Smith-Waterman score: 2295; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)
10 20 30 40 50 60
pF1KA0 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
250 260 270 280 290 300
310 320 330 340 350
pF1KA0 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
310 320 330 340 350
>>NP_005267 (OMIM: 138420,614480) glycerol-3-phosphate d (349 aa)
initn: 1733 init1: 1733 opt: 1733 Z-score: 2222.4 bits: 419.7 E(85289): 4.7e-117
Smith-Waterman score: 1733; 71.8% identity (90.5% similar) in 347 aa overlap (4-350:2-348)
10 20 30 40 50 60
pF1KA0 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
: :::::::::::::.:::.:.:. .: .: : :::::: ..:.:::.:::..:
NP_005 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQH
10 20 30 40 50
70 80 90 100 110 120
pF1KA0 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
:::::::::::: ::::. .. .:..:::.:.::.::::: .:::.. :.. .: ::.:
NP_005 ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA0 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
:::.::::.::::::..: :..:: .:::::::::.::: ::::::::: : .: :.:
NP_005 IKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KA0 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
::.::::::::::...::::.::::::.::::::::::: :::::::::::::::::::
NP_005 ELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF
180 190 200 210 220 230
250 260 270 280 290 300
pF1KA0 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
:..::.: ::.::::::::::::::::::::::.::::::::::.::.::::.:::::::
NP_005 AKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQ
240 250 260 270 280 290
310 320 330 340 350
pF1KA0 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
::.:. :.: ::..:::.:::::: :::..:::..:: :.. :::.::::
NP_005 GPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
300 310 320 330 340
>>XP_006713131 (OMIM: 611777,611778) PREDICTED: glycerol (304 aa)
initn: 1980 init1: 1496 opt: 1496 Z-score: 1919.8 bits: 363.5 E(85289): 3.4e-100
Smith-Waterman score: 1890; 86.6% identity (86.6% similar) in 351 aa overlap (1-351:1-304)
10 20 30 40 50 60
pF1KA0 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
:::::::::::::::
XP_006 ENVKYLPGHKLPENV---------------------------------------------
70
130 140 150 160 170 180
pF1KA0 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 --GIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
80 90 100 110 120 130
190 200 210 220 230 240
pF1KA0 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
140 150 160 170 180 190
250 260 270 280 290 300
pF1KA0 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
200 210 220 230 240 250
310 320 330 340 350
pF1KA0 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
260 270 280 290 300
>>NP_001244128 (OMIM: 138420,614480) glycerol-3-phosphat (326 aa)
initn: 1292 init1: 1292 opt: 1292 Z-score: 1658.0 bits: 315.2 E(85289): 1.3e-85
Smith-Waterman score: 1581; 68.3% identity (84.4% similar) in 347 aa overlap (4-350:2-325)
10 20 30 40 50 60
pF1KA0 MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDH
: :::::::::::::.:::.:.:. .: .: : :::::: ..:.:::.:::..:
NP_001 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQH
10 20 30 40 50
70 80 90 100 110 120
pF1KA0 ENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITL
:::::::::::: :: :: .:::.. :.. .: ::.:
NP_001 ENVKYLPGHKLPPNV-----------------------FIGKICDQLKGHLKANATGISL
60 70 80 90
130 140 150 160 170 180
pF1KA0 IKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFK
:::.::::.::::::..: :..:: .:::::::::.::: ::::::::: : .: :.:
NP_001 IKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KA0 ELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAF
::.::::::::::...::::.::::::.::::::::::: :::::::::::::::::::
NP_001 ELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KA0 ARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQ
:..::.: ::.::::::::::::::::::::::.::::::::::.::.::::.:::::::
NP_001 AKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQ
220 230 240 250 260 270
310 320 330 340 350
pF1KA0 GPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEHT
::.:. :.: ::..:::.:::::: :::..:::..:: :.. :::.::::
NP_001 GPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
280 290 300 310 320
351 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:00:19 2016 done: Wed Nov 2 18:00:20 2016
Total Scan time: 7.230 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]