FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0094, 386 aa
  1>>>pF1KA0094 386 - 386 aa - 386 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1169+/-0.00091; mu= 18.6212+/- 0.055
 mean_var=71.6101+/-14.255, 0's: 0 Z-trim(106.2): 23  B-trim: 73 in 1/50
 Lambda= 0.151561
 statistics sampled from 8865 (8874) to 8865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.273), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS47110.1 METAP1 gene_id:23173|Hs108|chr4        ( 386) 2695 598.4 3.5e-171
CCDS2246.1 METAP1D gene_id:254042|Hs108|chr2       ( 335)  844 193.7 2.1e-49


>>CCDS47110.1 METAP1 gene_id:23173|Hs108|chr4             (386 aa)
 initn: 2695 init1: 2695 opt: 2695  Z-score: 3186.8  bits: 598.4 E(32554): 3.5e-171
Smith-Waterman score: 2695; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)

               10        20        30        40        50        60
pF1KA0 MAAVETRVCETDGCSSEAKLQCPTCIKLGIQGSYFCSQECFKGSWATHKLLHKKAKDEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAAVETRVCETDGCSSEAKLQCPTCIKLGIQGSYFCSQECFKGSWATHKLLHKKAKDEKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 KREVSSWTVEGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KREVSSWTVEGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 ALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 PSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 VDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 HTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHT
              310       320       330       340       350       360

              370       380      
pF1KA0 LLVTDTGCEILTRRLDSARPHFMSQF
       ::::::::::::::::::::::::::
CCDS47 LLVTDTGCEILTRRLDSARPHFMSQF
              370       380      

>>CCDS2246.1 METAP1D gene_id:254042|Hs108|chr2            (335 aa)
 initn: 811 init1: 595 opt: 844  Z-score: 1000.3  bits: 193.7 E(32554): 2.1e-49
Smith-Waterman score: 844; 47.1% identity (75.7% similar) in 276 aa overlap (98-373:63-330)

        70        80        90       100       110       120       
pF1KA0 TVEGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQ
                                     :::..:..:::.    :.  .     : : 
CCDS22 SSQQRRNFFFRRQRDISHSIVLPAAVSSAHPVPKHIKKPDYV--TTGIVPD----WGDS-
             40        50        60        70          80          

       130       140       150       160       170       180       
pF1KA0 IKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYY
       :.. . ..:.:.. .:.:::.:: .:.  .:  .::::::  ::   :..: :::::.: 
CCDS22 IEVKNEDQIQGLHQACQLARHVLLLAGKSLKVDMTTEEIDALVHREIISHNAYPSPLGYG
          90       100       110       120       130       140     

       190       200       210       220       230       240       
pF1KA0 NFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARK
       .:::: :::::.:.:::::: ::::.:::.:.:.:.: :::::: .:::.::.::. ..:
CCDS22 GFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDECGKK
         150       160       170       180       190       200     

       250       260       270       280       290       300       
pF1KA0 LVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVP
       ::... .:  .:: : . :. .  .:: :.. .. :::.:   . :::: . ::  :.. 
CCDS22 LVEVARRCRDEAIAACRAGAPFSVIGNTISHITHQNGFQVCPHFVGHGIGSYFHGHPEIW
         210       220       230       240       250       260     

       310       320       330       340       350       360       
pF1KA0 HYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTG
       :.:... .  :. : .:::::.: ::. . ..  :.::.:. :..::::::::.:.:. :
CCDS22 HHANDSDLP-MEEGMAFTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITSRG
         270        280       290       300       310       320    

       370       380      
pF1KA0 CEILTRRLDSARPHFMSQF
        .:::.             
CCDS22 AQILTKLPHEA        
          330             




386 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:02:18 2016 done: Wed Nov  2 18:02:18 2016
 Total Scan time:  2.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]