Result of FASTA (ccds) for
pF1KA0095
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0095, 819 aa
1>>>pF1KA0095 819 - 819 aa - 819 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9773+/-0.00101; mu= 16.6487+/- 0.061
mean_var=68.3903+/-13.395, 0's: 0 Z-trim(103.5): 20 B-trim: 0 in 0/52
Lambda= 0.155088
statistics sampled from 7445 (7454) to 7445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.229), width: 16
Scan time: 3.710
The best scores are: opt bits E(32554)
CCDS10769.1 NUP93 gene_id:9688|Hs108|chr16 ( 819) 5314 1198.6 0
CCDS55996.1 NUP93 gene_id:9688|Hs108|chr16 ( 696) 4555 1028.8 0
>>CCDS10769.1 NUP93 gene_id:9688|Hs108|chr16 (819 aa)
initn: 5314 init1: 5314 opt: 5314 Z-score: 6418.6 bits: 1198.6 E(32554): 0
Smith-Waterman score: 5314; 100.0% identity (100.0% similar) in 819 aa overlap (1-819:1-819)
10 20 30 40 50 60
pF1KA0 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 SVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 TFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 IEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVLLTPATD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVLLTPATD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 RRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 VCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAVAFLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAVAFLF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 RMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCLRRLNFVRLLMLYTRKFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCLRRLNFVRLLMLYTRKFE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 STDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 FTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 ERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 PLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSSSRPQRVIED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSSSRPQRVIED
730 740 750 760 770 780
790 800 810
pF1KA0 RDSQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN
:::::::::::::::::::::::::::::::::::::::
CCDS10 RDSQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN
790 800 810
>>CCDS55996.1 NUP93 gene_id:9688|Hs108|chr16 (696 aa)
initn: 4555 init1: 4555 opt: 4555 Z-score: 5502.0 bits: 1028.8 E(32554): 0
Smith-Waterman score: 4555; 100.0% identity (100.0% similar) in 696 aa overlap (124-819:1-696)
100 110 120 130 140 150
pF1KA0 KDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGE
::::::::::::::::::::::::::::::
CCDS55 MAEEYHRESMLVEWEQVKQRILHTLLASGE
10 20 30
160 170 180 190 200 210
pF1KA0 DALDFTQESEPSYISDVGPPGRSSLDNIEMAYARQIYIYNEKIVNGHLQPNLVDLCASVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DALDFTQESEPSYISDVGPPGRSSLDNIEMAYARQIYIYNEKIVNGHLQPNLVDLCASVA
40 50 60 70 80 90
220 230 240 250 260 270
pF1KA0 ELDDKSISDMWTMVKQMTDVLLTPATDALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ELDDKSISDMWTMVKQMTDVLLTPATDALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVT
100 110 120 130 140 150
280 290 300 310 320 330
pF1KA0 VFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLA
160 170 180 190 200 210
340 350 360 370 380 390
pF1KA0 ASQVVNRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASQVVNRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCI
220 230 240 250 260 270
400 410 420 430 440 450
pF1KA0 IGRCDVTDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IGRCDVTDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHF
280 290 300 310 320 330
460 470 480 490 500 510
pF1KA0 TVNQQPFLYFQVLFLTAQFEAAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TVNQQPFLYFQVLFLTAQFEAAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLL
340 350 360 370 380 390
520 530 540 550 560 570
pF1KA0 SHEPGDPPCLRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SHEPGDPPCLRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSEL
400 410 420 430 440 450
580 590 600 610 620 630
pF1KA0 VIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAK
460 470 480 490 500 510
640 650 660 670 680 690
pF1KA0 NADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLL
520 530 540 550 560 570
700 710 720 730 740 750
pF1KA0 DLITFFDEYHSGHIDRAFDIIERLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DLITFFDEYHSGHIDRAFDIIERLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATM
580 590 600 610 620 630
760 770 780 790 800 810
pF1KA0 NILFTQFKRLKGTSPSSSSRPQRVIEDRDSQLRSQARTLITFAGMIPYRTSGDTNARLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NILFTQFKRLKGTSPSSSSRPQRVIEDRDSQLRSQARTLITFAGMIPYRTSGDTNARLVQ
640 650 660 670 680 690
pF1KA0 MEVLMN
::::::
CCDS55 MEVLMN
819 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:03:05 2016 done: Wed Nov 2 18:03:06 2016
Total Scan time: 3.710 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]