Result of FASTA (ccds) for
pF1KA0099
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0099, 1162 aa
1>>>pF1KA0099 1162 - 1162 aa - 1162 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9900+/-0.00107; mu= 0.9212+/- 0.064
mean_var=222.3012+/-45.044, 0's: 0 Z-trim(111.5): 45 B-trim: 0 in 0/51
Lambda= 0.086021
statistics sampled from 12412 (12435) to 12412 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.382), width: 16
Scan time: 5.900
The best scores are: opt bits E(32554)
CCDS338.1 PUM1 gene_id:9698|Hs108|chr1 (1186) 4043 515.5 3e-145
CCDS44099.1 PUM1 gene_id:9698|Hs108|chr1 (1188) 3868 493.8 1e-138
CCDS74487.1 PUM2 gene_id:23369|Hs108|chr2 (1008) 3277 420.4 1.1e-116
CCDS1698.1 PUM2 gene_id:23369|Hs108|chr2 (1064) 3277 420.4 1.1e-116
CCDS74486.1 PUM2 gene_id:23369|Hs108|chr2 ( 929) 2502 324.2 9.1e-88
>>CCDS338.1 PUM1 gene_id:9698|Hs108|chr1 (1186 aa)
initn: 6598 init1: 2904 opt: 4043 Z-score: 2721.1 bits: 515.5 E(32554): 3e-145
Smith-Waterman score: 7664; 97.4% identity (97.4% similar) in 1189 aa overlap (1-1162:1-1186)
10 20 30 40 50 60
pF1KA0 MSVACVLKRKAVLWQDSFSPHLKHHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSVACVLKRKAVLWQDSFSPHLKHHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 HSSPVPGSIGVAGRSQDDAMVDYFFQRQHGEQLGGGGSGGGGYNNSKHRWPTGDNIHAEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HSSPVPGSIGVAGRSQDDAMVDYFFQRQHGEQLGGGGSGGGGYNNSKHRWPTGDNIHAEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 QVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDESSKDGPKGIFLGDQWRDSAWGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDESSKDGPKGIFLGDQWRDSAWGTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 DHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGGLGVSMVEYVLSSSPGDSCLRKGGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGGLGVSMVEYVLSSSPGDSCLRKGGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 GPRDADSDENDKGEKKNKGTFDGDKLGDLKEEGDVMDKTNGLPVQNGIDADVKDFSRTPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPRDADSDENDKGEKKNKGTFDGDKLGDLKEEGDVMDKTNGLPVQNGIDADVKDFSRTPG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 NCQNSANEVDLLGPNQNGSEGLAQLTSTNGAKPVEDFSNMESQSVPLDPMEHVGMEPLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NCQNSANEVDLLGPNQNGSEGLAQLTSTNGAKPVEDFSNMESQSVPLDPMEHVGMEPLQF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 DYSGTQVPVDSAAATVGLFDYNSQQQLFQRPNALAVQQLTAAQQQQYALAAAHQPHIAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS33 DYSGTQVPVDSAAATVGLFDYNSQQQLFQRPNALAVQQLTAAQQQQYALAAAHQPHI-GL
370 380 390 400 410
430 440 450 460 470 480
pF1KA0 APAAFVPNPYIISAAPPGTDPYTAGLAAAATLGPAVVPHQYYGVTPWGVYPASLFQQQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 APAAFVPNPYIISAAPPGTDPYTAGLAAAATLGPAVVPHQYYGVTPWGVYPASLFQQQAA
420 430 440 450 460 470
490 500 510 520 530 540
pF1KA0 AAAAATNSANQQTTPQAQQGQQQVLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AAAAATNSANQQTTPQAQQGQQQVLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAF
480 490 500 510 520 530
550 560 570 580 590
pF1KA0 GQGLAAGMPGYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQA---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GQGLAAGMPGYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVA
540 550 560 570 580 590
600 610 620 630
pF1KA0 ------------------------GTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSS
::::::::::::::::::::::::::::::::::::
CCDS33 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSS
600 610 620 630 640 650
640 650 660 670 680 690
pF1KA0 LFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR
660 670 680 690 700 710
700 710 720 730 740 750
pF1KA0 TSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN
720 730 740 750 760 770
760 770 780 790 800 810
pF1KA0 GSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNN
780 790 800 810 820 830
820 830 840 850 860 870
pF1KA0 RYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLNVDVFGN
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS33 RYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGN
840 850 860 870 880 890
880 890 900 910 920 930
pF1KA0 YVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVREL
::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS33 YVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--NEMVREL
900 910 920 930 940 950
940 950 960 970 980 990
pF1KA0 DGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHC
960 970 980 990 1000 1010
1000 1010 1020 1030 1040 1050
pF1KA0 LPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKF
1020 1030 1040 1050 1060 1070
1060 1070 1080 1090 1100 1110
pF1KA0 ASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQR
1080 1090 1100 1110 1120 1130
1120 1130 1140 1150 1160
pF1KA0 KIVMHKIRPHIATLRKYTYGKHILAKLEKYYMKNGVDLGPICGPPNGII
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KIVMHKIRPHIATLRKYTYGKHILAKLEKYYMKNGVDLGPICGPPNGII
1140 1150 1160 1170 1180
>>CCDS44099.1 PUM1 gene_id:9698|Hs108|chr1 (1188 aa)
initn: 6622 init1: 3732 opt: 3868 Z-score: 2603.7 bits: 493.8 E(32554): 1e-138
Smith-Waterman score: 7688; 97.6% identity (97.6% similar) in 1189 aa overlap (1-1162:1-1188)
10 20 30 40 50 60
pF1KA0 MSVACVLKRKAVLWQDSFSPHLKHHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSVACVLKRKAVLWQDSFSPHLKHHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 HSSPVPGSIGVAGRSQDDAMVDYFFQRQHGEQLGGGGSGGGGYNNSKHRWPTGDNIHAEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HSSPVPGSIGVAGRSQDDAMVDYFFQRQHGEQLGGGGSGGGGYNNSKHRWPTGDNIHAEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 QVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDESSKDGPKGIFLGDQWRDSAWGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDESSKDGPKGIFLGDQWRDSAWGTS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 DHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGGLGVSMVEYVLSSSPGDSCLRKGGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGGLGVSMVEYVLSSSPGDSCLRKGGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 GPRDADSDENDKGEKKNKGTFDGDKLGDLKEEGDVMDKTNGLPVQNGIDADVKDFSRTPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GPRDADSDENDKGEKKNKGTFDGDKLGDLKEEGDVMDKTNGLPVQNGIDADVKDFSRTPG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 NCQNSANEVDLLGPNQNGSEGLAQLTSTNGAKPVEDFSNMESQSVPLDPMEHVGMEPLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NCQNSANEVDLLGPNQNGSEGLAQLTSTNGAKPVEDFSNMESQSVPLDPMEHVGMEPLQF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 DYSGTQVPVDSAAATVGLFDYNSQQQLFQRPNALAVQQLTAAQQQQYALAAAHQPHIAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS44 DYSGTQVPVDSAAATVGLFDYNSQQQLFQRPNALAVQQLTAAQQQQYALAAAHQPHI-GL
370 380 390 400 410
430 440 450 460 470 480
pF1KA0 APAAFVPNPYIISAAPPGTDPYTAGLAAAATLGPAVVPHQYYGVTPWGVYPASLFQQQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 APAAFVPNPYIISAAPPGTDPYTAGLAAAATLGPAVVPHQYYGVTPWGVYPASLFQQQAA
420 430 440 450 460 470
490 500 510 520 530 540
pF1KA0 AAAAATNSANQQTTPQAQQGQQQVLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AAAAATNSANQQTTPQAQQGQQQVLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAF
480 490 500 510 520 530
550 560 570 580 590
pF1KA0 GQGLAAGMPGYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQA---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GQGLAAGMPGYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVA
540 550 560 570 580 590
600 610 620 630
pF1KA0 ------------------------GTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSS
::::::::::::::::::::::::::::::::::::
CCDS44 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSS
600 610 620 630 640 650
640 650 660 670 680 690
pF1KA0 LFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR
660 670 680 690 700 710
700 710 720 730 740 750
pF1KA0 TSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN
720 730 740 750 760 770
760 770 780 790 800 810
pF1KA0 GSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNN
780 790 800 810 820 830
820 830 840 850 860 870
pF1KA0 RYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLNVDVFGN
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS44 RYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGN
840 850 860 870 880 890
880 890 900 910 920 930
pF1KA0 YVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVREL
900 910 920 930 940 950
940 950 960 970 980 990
pF1KA0 DGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHC
960 970 980 990 1000 1010
1000 1010 1020 1030 1040 1050
pF1KA0 LPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKF
1020 1030 1040 1050 1060 1070
1060 1070 1080 1090 1100 1110
pF1KA0 ASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQR
1080 1090 1100 1110 1120 1130
1120 1130 1140 1150 1160
pF1KA0 KIVMHKIRPHIATLRKYTYGKHILAKLEKYYMKNGVDLGPICGPPNGII
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KIVMHKIRPHIATLRKYTYGKHILAKLEKYYMKNGVDLGPICGPPNGII
1140 1150 1160 1170 1180
>>CCDS74487.1 PUM2 gene_id:23369|Hs108|chr2 (1008 aa)
initn: 4730 init1: 1696 opt: 3277 Z-score: 2208.4 bits: 420.4 E(32554): 1.1e-116
Smith-Waterman score: 4985; 76.8% identity (89.1% similar) in 1016 aa overlap (184-1162:1-1008)
160 170 180 190 200 210
pF1KA0 ETDESSKDGPKGIFLGDQWRDSAWGTSDHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSE
.::::::::: ::.:: :::::..::::::
CCDS74 MSQPIMVQRRSGQGFHGNSEVNAILSPRSE
10 20 30
220 230 240 250 260
pF1KA0 SGGLGVSMVEYVLSSSPGD---SCLRKGGFGPRDADSDENDKGEKKNKGT-FDGDKLGDL
:::::::::::::::::.: : .:::.:: :::..: .::..:.:.. :. :. ::
CCDS74 SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
40 50 60 70 80 90
270 280 290 300 310 320
pF1KA0 KEEGDVMDKTNGLPVQNGIDADVKDFSRTPGNCQNSANEV-DLLGPNQNGSEGLAQLTST
:. : .: :: . ::.::: :::.::::. : : .:: . :::: : ::::. : .
CCDS74 KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
100 110 120 130 140 150
330 340 350 360 370 380
pF1KA0 NGAKP-VEDFSNMESQSVPLDPMEHVGMEPLQFDYSGTQVPVDSAAATVGLFDYNSQQQL
.. :: ::.::: :.:. :: ::.::.: ::::: :.:::.::..::::::::::::::
CCDS74 TANKPLVEEFSNPETQN--LDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQL
160 170 180 190 200
390 400 410 420 430 440
pF1KA0 FQRPNALAVQQLTAAQQQQYALAAAHQPHIAG-----LAPAAFVPNPYIISAAPPGTDPY
::: :::.:::::::::::::::::.:::::: :::::::::::::::::::::::
CCDS74 FQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPY
210 220 230 240 250 260
450 460 470 480 490 500
pF1KA0 TA-GLAAAATL-GPAVVPHQYYGVTPWGVYPASLFQQQAAAAAAATNSANQQTTPQAQQG
:: :::::::: :::::: ::::: :::::::.::::::::: :.:.:.::.. ::: :
CCDS74 TAAGLAAAATLAGPAVVPPQYYGV-PWGVYPANLFQQQAAAA--ANNTASQQAASQAQPG
270 280 290 300 310 320
510 520 530 540 550 560
pF1KA0 QQQVLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAFGQGLAAGMPGYPVLAPAAYY
::::::.::.::::::::.:::::.. :.::::.: .::::::::.::::: ::::.:::
CCDS74 QQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYY
330 340 350 360 370 380
570 580 590
pF1KA0 DQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQA-----------------------
::::::::. :::.::::::::.::.::.:::.::::
CCDS74 DQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRP
390 400 410 420 430 440
600 610 620 630 640 650
pF1KA0 -GTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLG
::: :: : ::::..:: :.::::..::...::::::::.: .::..:::::::..:::
CCDS74 IGTQPPQ-QQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLG
450 460 470 480 490 500
660 670 680 690 700 710
pF1KA0 ATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSSPG
:..::::.:::..:..: ..:..::.::. :::::::.::::.:::. :::.:.:::::.
CCDS74 AAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPS
510 520 530 540 550 560
720 730 740 750 760 770
pF1KA0 PVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRYISAAPGAEAKYRSASSAS
:.::::::: :::: :::::::::::::::.:::::::::::::::::::::::::::.:
CCDS74 PIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTS
570 580 590 600 610 620
780 790 800 810 820 830
pF1KA0 SLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHG
:::: :: :: :::::. ::.::::::::::::::::.::::::.. :::.::::::::
CCDS74 SLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHG
630 640 650 660 670 680
840 850 860 870 880 890
pF1KA0 SRFIQLKLERATPAERQLVFNEILQAAYQLNVDVFGNYVIQKFFEFGSLEQKLALAERIR
::::: :::::::::::.:::::::::::: .:::::::::::::::::.:::::: :::
CCDS74 SRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR
690 700 710 720 730 740
900 910 920 930 940 950
pF1KA0 GHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIEC
:::: :::::::::::::::: : :::: .:::.:::::::::::::::::::::::::
CCDS74 GHVLPLALQMYGCRVIQKALESISSDQQ--SEMVKELDGHVLKCVKDQNGNHVVQKCIEC
750 760 770 780 790 800
960 970 980 990 1000 1010
pF1KA0 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ
::::::::::::::::::.:::::::::::::::::: .::::::::::::::::::::
CCDS74 VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ
810 820 830 840 850 860
1020 1030 1040 1050 1060 1070
pF1KA0 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDE
::::::::::::::::::::::.::::.::.::::::::::::::::::::.:::.::::
CCDS74 YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDE
870 880 890 900 910 920
1080 1090 1100 1110 1120 1130
pF1KA0 VCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHI
:: .::::::::::::::::::::::::::.:::.::::.::::::::.:::::::::::
CCDS74 VCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHI
930 940 950 960 970 980
1140 1150 1160
pF1KA0 LAKLEKYYMKNGVDLGPICGPPNGII
::::::::.::. ::::: :::::..
CCDS74 LAKLEKYYLKNSPDLGPIGGPPNGML
990 1000
>>CCDS1698.1 PUM2 gene_id:23369|Hs108|chr2 (1064 aa)
initn: 4898 init1: 1696 opt: 3277 Z-score: 2208.1 bits: 420.4 E(32554): 1.1e-116
Smith-Waterman score: 5277; 76.6% identity (89.1% similar) in 1073 aa overlap (128-1162:1-1064)
100 110 120 130 140 150
pF1KA0 SGGGGYNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDE
.::::::::::.:.::: ::: ::::: :.
CCDS16 MNHDFQALALESRGMGE-LLPTKKFWEPDD
10 20
160 170 180 190 200 210
pF1KA0 SSKDGPKGIFLGD-QWRDSAWGTSDHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGG
:.::: ::::::: .::..:::.: ::.::::::::: ::.:: :::::..:::::::::
CCDS16 STKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSESGG
30 40 50 60 70 80
220 230 240 250 260 270
pF1KA0 LGVSMVEYVLSSSPGD---SCLRKGGFGPRDADSDENDKGEKKNKGT-FDGDKLGDLKEE
::::::::::::::.: : .:::.:: :::..: .::..:.:.. :. :. :::.
CCDS16 LGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQG
90 100 110 120 130 140
280 290 300 310 320 330
pF1KA0 GDVMDKTNGLPVQNGIDADVKDFSRTPGNCQNSANEV-DLLGPNQNGSEGLAQLTSTNGA
: .: :: . ::.::: :::.::::. : : .:: . :::: : ::::. : . ..
CCDS16 DDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNPTAN
150 160 170 180 190 200
340 350 360 370 380 390
pF1KA0 KP-VEDFSNMESQSVPLDPMEHVGMEPLQFDYSGTQVPVDSAAATVGLFDYNSQQQLFQR
:: ::.::: :.:. :: ::.::.: ::::: :.:::.::..:::::::::::::::::
CCDS16 KPLVEEFSNPETQN--LDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQR
210 220 230 240 250 260
400 410 420 430 440
pF1KA0 PNALAVQQLTAAQQQQYALAAAHQPHIAG-----LAPAAFVPNPYIISAAPPGTDPYTA-
:::.:::::::::::::::::.:::::: :::::::::::::::::::::::::
CCDS16 TNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAA
270 280 290 300 310 320
450 460 470 480 490 500
pF1KA0 GLAAAATL-GPAVVPHQYYGVTPWGVYPASLFQQQAAAAAAATNSANQQTTPQAQQGQQQ
:::::::: :::::: ::::: :::::::.:::::::::: .:.:.::.. ::: ::::
CCDS16 GLAAAATLAGPAVVPPQYYGV-PWGVYPANLFQQQAAAAA--NNTASQQAASQAQPGQQQ
330 340 350 360 370 380
510 520 530 540 550 560
pF1KA0 VLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAFGQGLAAGMPGYPVLAPAAYYDQT
:::.::.::::::::.:::::.. :.::::.: .::::::::.::::: ::::.::::::
CCDS16 VLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQT
390 400 410 420 430 440
570 580 590
pF1KA0 GALVVNAGARNGLGAPVRLVAPAPVIISSSAAQA------------------------GT
:::::. :::.::::::::.::.::.:::.:::: ::
CCDS16 GALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGT
450 460 470 480 490 500
600 610 620 630 640 650
pF1KA0 QQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATL
: :: : ::::..:: :.::::..::...::::::::.: .::..:::::::..::::..
CCDS16 QPPQQQ-QQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAI
510 520 530 540 550 560
660 670 680 690 700 710
pF1KA0 GSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSSPGPVG
::::.:::..:..: ..:..::.::. :::::::.::::.:::. :::.:.:::::.:.:
CCDS16 GSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIG
570 580 590 600 610 620
720 730 740 750 760 770
pF1KA0 MPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLF
:::::: :::: :::::::::::::::.:::::::::::::::::::::::::::.::::
CCDS16 MPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLF
630 640 650 660 670 680
780 790 800 810 820 830
pF1KA0 SPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRF
: :: :: :::::. ::.::::::::::::::::.::::::.. :::.:::::::::::
CCDS16 SSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRF
690 700 710 720 730 740
840 850 860 870 880 890
pF1KA0 IQLKLERATPAERQLVFNEILQAAYQLNVDVFGNYVIQKFFEFGSLEQKLALAERIRGHV
:: :::::::::::.:::::::::::: .:::::::::::::::::.:::::: ::::::
CCDS16 IQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHV
750 760 770 780 790 800
900 910 920 930 940 950
pF1KA0 LSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP
: :::::::::::::::: : :::: .:::.::::::::::::::::::::::::::::
CCDS16 LPLALQMYGCRVIQKALESISSDQQ--SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQP
810 820 830 840 850 860
960 970 980 990 1000 1010
pF1KA0 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGN
:::::::::::::::.:::::::::::::::::: .:::::::::::::::::::::::
CCDS16 QSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGN
870 880 890 900 910 920
1020 1030 1040 1050 1060 1070
pF1KA0 YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT
:::::::::::::::::::.::::.::.::::::::::::::::::::.:::.::::::
CCDS16 YVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCC
930 940 950 960 970 980
1080 1090 1100 1110 1120 1130
pF1KA0 MNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK
.::::::::::::::::::::::::::.:::.::::.::::::::.::::::::::::::
CCDS16 QNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK
990 1000 1010 1020 1030 1040
1140 1150 1160
pF1KA0 LEKYYMKNGVDLGPICGPPNGII
:::::.::. ::::: :::::..
CCDS16 LEKYYLKNSPDLGPIGGPPNGML
1050 1060
>>CCDS74486.1 PUM2 gene_id:23369|Hs108|chr2 (929 aa)
initn: 4032 init1: 1469 opt: 2502 Z-score: 1689.2 bits: 324.2 E(32554): 9.1e-88
Smith-Waterman score: 4423; 71.1% identity (81.8% similar) in 1016 aa overlap (184-1162:1-929)
160 170 180 190 200 210
pF1KA0 ETDESSKDGPKGIFLGDQWRDSAWGTSDHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSE
.::::::::: ::.:: :::::..::::::
CCDS74 MSQPIMVQRRSGQGFHGNSEVNAILSPRSE
10 20 30
220 230 240 250 260
pF1KA0 SGGLGVSMVEYVLSSSPGD---SCLRKGGFGPRDADSDENDKGEKKNKGT-FDGDKLGDL
:::::::::::::::::.: : .:::.:: :::..: .::..:.:.. :. :. ::
CCDS74 SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
40 50 60 70 80 90
270 280 290 300 310 320
pF1KA0 KEEGDVMDKTNGLPVQNGIDADVKDFSRTPGNCQNSANEV-DLLGPNQNGSEGLAQLTST
:. : .: :: . ::.::: :::.::::. : : .:: . :::: : ::::. : .
CCDS74 KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
100 110 120 130 140 150
330 340 350 360 370 380
pF1KA0 NGAKP-VEDFSNMESQSVPLDPMEHVGMEPLQFDYSGTQVPVDSAAATVGLFDYNSQQQL
.. :: ::.::: :.:. :: ::.::.: ::::: :.:::.::..::::::::::::::
CCDS74 TANKPLVEEFSNPETQN--LDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQL
160 170 180 190 200
390 400 410 420 430 440
pF1KA0 FQRPNALAVQQLTAAQQQQYALAAAHQPHIAG-----LAPAAFVPNPYIISAAPPGTDPY
::: :::.:::::::::::::::::.:::::: :::::::::::::::::::::::
CCDS74 FQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPY
210 220 230 240 250 260
450 460 470 480 490 500
pF1KA0 TA-GLAAAATL-GPAVVPHQYYGVTPWGVYPASLFQQQAAAAAAATNSANQQTTPQAQQG
:: :::::::: :::::: ::::: :::::::.::::::::: :.:.:.::.. ::: :
CCDS74 TAAGLAAAATLAGPAVVPPQYYGV-PWGVYPANLFQQQAAAA--ANNTASQQAASQAQPG
270 280 290 300 310 320
510 520 530 540 550 560
pF1KA0 QQQVLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAFGQGLAAGMPGYPVLAPAAYY
::::::.::.::::::::.:::::.. :.::::.: .::::::::.::::: ::::.:::
CCDS74 QQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYY
330 340 350 360 370 380
570 580 590
pF1KA0 DQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQA-----------------------
::::::::. :::.::::::::.::.::.:::.::::
CCDS74 DQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRP
390 400 410 420 430 440
600 610 620 630 640 650
pF1KA0 -GTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLG
::: :: : ::::..:: :.::::..::...::::::::.: .::..:::::::..:::
CCDS74 IGTQPPQ-QQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLG
450 460 470 480 490 500
660 670 680 690 700 710
pF1KA0 ATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSSPG
:..::::.:::..
CCDS74 AAIGSALSGFGSS-----------------------------------------------
510
720 730 740 750 760 770
pF1KA0 PVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRYISAAPGAEAKYRSASSAS
::::::::::::::::::::::::::.:
CCDS74 --------------------------------GGLTNGSGRYISAAPGAEAKYRSASSTS
520 530 540
780 790 800 810 820 830
pF1KA0 SLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHG
:::: :: :: :::::. ::.::::::::::::::::.::::::.. :::.::::::::
CCDS74 SLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHG
550 560 570 580 590 600
840 850 860 870 880 890
pF1KA0 SRFIQLKLERATPAERQLVFNEILQAAYQLNVDVFGNYVIQKFFEFGSLEQKLALAERIR
::::: :::::::::::.:::::::::::: .:::::::::::::::::.:::::: :::
CCDS74 SRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR
610 620 630 640 650 660
900 910 920 930 940 950
pF1KA0 GHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIEC
:::: :::::::::::::::: : :::: .:::.:::::::::::::::::::::::::
CCDS74 GHVLPLALQMYGCRVIQKALESISSDQQ--SEMVKELDGHVLKCVKDQNGNHVVQKCIEC
670 680 690 700 710 720
960 970 980 990 1000 1010
pF1KA0 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ
::::::::::::::::::.:::::::::::::::::: .::::::::::::::::::::
CCDS74 VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ
730 740 750 760 770 780
1020 1030 1040 1050 1060 1070
pF1KA0 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDE
::::::::::::::::::::::.::::.::.::::::::::::::::::::.:::.::::
CCDS74 YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDE
790 800 810 820 830 840
1080 1090 1100 1110 1120 1130
pF1KA0 VCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHI
:: .::::::::::::::::::::::::::.:::.::::.::::::::.:::::::::::
CCDS74 VCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHI
850 860 870 880 890 900
1140 1150 1160
pF1KA0 LAKLEKYYMKNGVDLGPICGPPNGII
::::::::.::. ::::: :::::..
CCDS74 LAKLEKYYLKNSPDLGPIGGPPNGML
910 920
1162 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:08:34 2016 done: Thu Nov 3 09:08:35 2016
Total Scan time: 5.900 Total Display time: 0.300
Function used was FASTA [36.3.4 Apr, 2011]