FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0101, 111 aa
  1>>>pF1KA0101 111 - 111 aa - 111 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8831+/-0.00026; mu= 7.6193+/- 0.016
 mean_var=75.5001+/-14.939, 0's: 0 Z-trim(120.8): 2  B-trim: 430 in 1/55
 Lambda= 0.147605
 statistics sampled from 36490 (36493) to 36490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.428), width:  16
 Scan time:  4.500

The best scores are:                                      opt bits E(85289)
NP_055551 (OMIM: 610696) PCNA-associated factor is ( 111)  737 165.1 2.1e-41
NP_001025160 (OMIM: 610696) PCNA-associated factor (  65)  250 61.3 2.2e-10


>>NP_055551 (OMIM: 610696) PCNA-associated factor isofor  (111 aa)
 initn: 737 init1: 737 opt: 737  Z-score: 864.2  bits: 165.1 E(85289): 2.1e-41
Smith-Waterman score: 737; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)

               10        20        30        40        50        60
pF1KA0 MVRTKADSVPGTYRKVVAARAPRKVLGSSTSATNSTSVSSRKAENKYAGGNPVCVRPTPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MVRTKADSVPGTYRKVVAARAPRKVLGSSTSATNSTSVSSRKAENKYAGGNPVCVRPTPK
               10        20        30        40        50        60

               70        80        90       100       110 
pF1KA0 WQKGIGEFFRLSPKDSEKENQIPEEAGSSGLGKAKRKACPLQPDHTNDEKE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 WQKGIGEFFRLSPKDSEKENQIPEEAGSSGLGKAKRKACPLQPDHTNDEKE
               70        80        90       100       110 

>>NP_001025160 (OMIM: 610696) PCNA-associated factor iso  (65 aa)
 initn: 250 init1: 250 opt: 250  Z-score: 307.3  bits: 61.3 E(85289): 2.2e-10
Smith-Waterman score: 250; 100.0% identity (100.0% similar) in 42 aa overlap (1-42:1-42)

               10        20        30        40        50        60
pF1KA0 MVRTKADSVPGTYRKVVAARAPRKVLGSSTSATNSTSVSSRKAENKYAGGNPVCVRPTPK
       ::::::::::::::::::::::::::::::::::::::::::                  
NP_001 MVRTKADSVPGTYRKVVAARAPRKVLGSSTSATNSTSVSSRKEHVLCNLITQMMKKNRTF
               10        20        30        40        50        60

               70        80        90       100       110 
pF1KA0 WQKGIGEFFRLSPKDSEKENQIPEEAGSSGLGKAKRKACPLQPDHTNDEKE
                                                          
NP_001 SFIFE                                              
                                                          




111 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:27:08 2016 done: Fri Nov  4 00:27:09 2016
 Total Scan time:  4.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]