FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0104, 292 aa
  1>>>pF1KA0104 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8297+/-0.000758; mu= 10.0317+/- 0.046
 mean_var=119.1293+/-23.460, 0's: 0 Z-trim(113.1): 1  B-trim: 0 in 0/51
 Lambda= 0.117507
 statistics sampled from 13763 (13764) to 13763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.423), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS1960.2 MRPL19 gene_id:9801|Hs108|chr2          ( 292) 2006 350.3   1e-96


>>CCDS1960.2 MRPL19 gene_id:9801|Hs108|chr2               (292 aa)
 initn: 2006 init1: 2006 opt: 2006  Z-score: 1849.9  bits: 350.3 E(32554): 1e-96
Smith-Waterman score: 2006; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KA0 MAACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MAACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KA0 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS
              250       260       270       280       290  




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:27:42 2016 done: Fri Nov  4 00:27:43 2016
 Total Scan time:  2.410 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]