(Circular) (Six-base) MAPSORT of: pF1KA0131.seq Check: 2297 from: 1 to: 5951 pF1KA0131 5951 bp With 182 enzymes: SgfI * September 4, 2008 14:04 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 942 2523 942 Size: 1581 4370 AatII G_ACGT'C Cuts at: 902 902 Size: 5951 AccI GT'mk_AC Cuts at: 2222 2989 2222 Size: 767 5184 Acc65I G'GTAC_C Cuts at: 2967 2967 Size: 5951 AclI AA'CG_TT Cuts at: 5791 5791 Size: 5951 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1276 1495 1870 3776 4208 4955 5223 1276 Size: 219 375 1906 432 747 268 2004 Fragments arranged by size: 2004 1906 747 432 375 268 219 AfeI AGC'GCT Cuts at: 325 325 Size: 5951 AflIII A'CryG_T Cuts at: 2697 2943 3303 4407 5384 2697 Size: 246 360 1104 977 3264 Fragments arranged by size: 3264 1104 977 360 246 AgeI A'CCGG_T Cuts at: 2103 4339 2103 Size: 2236 3715 AlwNI CAG_nnn'CTG Cuts at: 252 501 564 1011 1275 2400 3256 4823 252 Size: 249 63 447 264 1125 856 1567 1380 Fragments arranged by size: 1567 1380 1125 856 447 264 249 63 ApaI G_GGCC'C Cuts at: 488 743 2093 2819 2881 2889 488 Size: 255 1350 726 62 8 3550 Fragments arranged by size: 3550 1350 726 255 62 8 ApaLI G'TGCA_C Cuts at: 822 4721 822 Size: 3899 2052 ApoI r'AATT_y Cuts at: 1567 2955 5304 5560 1567 Size: 1388 2349 256 1958 Fragments arranged by size: 2349 1958 1388 256 AseI AT'TA_AT Cuts at: 20 20 Size: 5951 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 5951 AvaI C'yCGr_G Cuts at: 299 1072 2445 2581 2873 2971 299 Size: 773 1373 136 292 98 3279 Fragments arranged by size: 3279 1373 773 292 136 98 BamHI G'GATC_C Cuts at: 1044 2976 1044 Size: 1932 4019 BanI G'GyrC_C Cuts at: 269 527 724 1744 2106 2238 2967 3381 3629 Size: 258 197 1020 362 132 729 414 248 Cuts at: 3629 3664 269 Size: 35 2556 Fragments arranged by size: 2556 1020 729 414 362 258 248 197 132 35 BanII G_rGCy'C Cuts at: 488 578 599 743 757 1194 1654 1877 2093 Size: 90 21 144 14 437 460 223 216 Cuts at: 2093 2753 2819 2881 2889 2965 3995 488 Size: 660 66 62 8 76 1030 2444 Fragments arranged by size: 2444 1030 660 460 437 223 216 144 90 76 66 62 21 14 8 BbeI G_GCGC'C Cuts at: 273 531 3385 3633 273 Size: 258 2854 248 2591 Fragments arranged by size: 2854 2591 258 248 BbsI GAAGACnn'nnnn_ Cuts at: 619 1083 2181 619 Size: 464 1098 4389 Fragments arranged by size: 4389 1098 464 BbvCI CC'TCA_GC Cuts at: 278 2901 278 Size: 2623 3328 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1063 1097 2164 2198 1063 Size: 34 1067 34 4816 Fragments arranged by size: 4816 1067 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3849 4610 5951 3849 Size: 761 1341 3849 Fragments arranged by size: 3849 1341 761 BclI T'GATC_A Cuts at: 3471 3471 Size: 5951 BglI GCCn_nnn'nGGC Cuts at: 341 733 2115 2852 341 Size: 392 1382 737 3440 Fragments arranged by size: 3440 1382 737 392 BglII A'GATC_T Cuts at: 1148 3466 5503 1148 Size: 2318 2037 1596 Fragments arranged by size: 2318 2037 1596 BlpI GC'TnA_GC Cuts at: 190 850 2401 3063 190 Size: 660 1551 662 3078 Fragments arranged by size: 3078 1551 662 660 Bme1580I G_kGCm'C Cuts at: 488 743 826 1670 1749 2093 2111 2819 2881 Size: 255 83 844 79 344 18 708 62 Cuts at: 2881 2889 3576 3669 4725 488 Size: 8 687 93 1056 1714 Fragments arranged by size: 1714 1056 844 708 687 344 255 93 83 79 62 18 8 BmgBI CAC'GTC Cuts at: 522 522 Size: 5951 BmrI ACTGGGnnnn_n' Cuts at: 1545 1596 2031 2801 3163 3244 3579 5723 1545 Size: 51 435 770 362 81 335 2144 1773 Fragments arranged by size: 2144 1773 770 435 362 335 81 51 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 345 606 2460 4318 345 Size: 261 1854 1858 1978 Fragments arranged by size: 1978 1858 1854 261 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 232 315 574 583 601 1034 1300 1423 1891 Size: 83 259 9 18 433 266 123 468 Cuts at: 1891 1948 2296 2362 232 Size: 57 348 66 3821 Fragments arranged by size: 3821 468 433 348 266 259 123 83 66 57 18 9 Bpu10I CC'TnA_GC Cuts at: 278 1653 2901 278 Size: 1375 1248 3328 Fragments arranged by size: 3328 1375 1248 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 745 802 1333 3127 4006 4498 4796 745 Size: 57 531 1794 879 492 298 1900 Fragments arranged by size: 1900 1794 879 531 492 298 57 BsaI GGTCTCn'nnnn_ Cuts at: 594 1405 1764 5655 594 Size: 811 359 3891 890 Fragments arranged by size: 3891 890 811 359 BsaAI yAC'GTr Cuts at: 1956 2700 3304 1956 Size: 744 604 4603 Fragments arranged by size: 4603 744 604 BsaBI GATnn'nnATC Cuts at: 6 3465 5502 6 Size: 3459 2037 455 Fragments arranged by size: 3459 2037 455 BsaHI Gr'CG_yC Cuts at: 270 528 899 2267 3382 3630 4332 5828 270 Size: 258 371 1368 1115 248 702 1496 393 Fragments arranged by size: 1496 1368 1115 702 393 371 258 248 BsaWI w'CCGG_w Cuts at: 377 959 1862 2103 3140 3661 4339 4613 4760 Size: 582 903 241 1037 521 678 274 147 Cuts at: 4760 5171 377 Size: 411 1157 Fragments arranged by size: 1157 1037 903 678 582 521 411 274 241 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 2787 2817 2787 Size: 30 5921 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 697 1252 1543 697 Size: 555 291 5105 Fragments arranged by size: 5105 555 291 BseYI C'CCAG_C Cuts at: 413 494 1594 1748 2113 2270 2679 2839 2889 Size: 81 1100 154 365 157 409 160 50 Cuts at: 2889 3376 4134 4711 5207 413 Size: 487 758 577 496 1157 Fragments arranged by size: 1157 1100 758 577 496 487 409 365 160 157 154 81 50 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1024 1797 2179 2194 2416 1024 Size: 773 382 15 222 4559 Fragments arranged by size: 4559 773 382 222 15 BsiEI CG_ry'CG Cuts at: 104 974 2184 3493 3539 4747 104 Size: 870 1210 1309 46 1208 1308 Fragments arranged by size: 1309 1308 1210 1208 870 46 BsiHKAI G_wGCw'C Cuts at: 368 578 599 757 812 826 959 1654 1955 Size: 210 21 158 55 14 133 695 301 Cuts at: 1955 2471 2753 2965 3743 3933 4725 368 Size: 516 282 212 778 190 792 1594 Fragments arranged by size: 1594 792 778 695 516 301 282 212 210 190 158 133 55 21 14 BsmI GAATG_Cn' Cuts at: 651 1688 651 Size: 1037 4914 BsmBI CGTCTCn'nnnn_ Cuts at: 154 154 Size: 5951 Bsp1286I G_dGCh'C Cuts at: 368 488 578 599 743 757 812 826 959 Size: 120 90 21 144 14 55 14 133 Cuts at: 959 1194 1654 1670 1749 1877 1955 2093 2111 Size: 235 460 16 79 128 78 138 18 Cuts at: 2111 2471 2753 2819 2881 2889 2965 3576 3669 Size: 360 282 66 62 8 76 611 93 Cuts at: 3669 3743 3933 3995 4725 368 Size: 74 190 62 730 1594 Fragments arranged by size: 1594 730 611 460 360 282 235 190 144 138 133 128 120 93 90 79 78 76 74 66 62 62 55 21 18 16 14 14 8 BspEI T'CCGG_A Cuts at: 377 959 1862 5171 377 Size: 582 903 3309 1157 Fragments arranged by size: 3309 1157 903 582 BspHI T'CATG_A Cuts at: 5127 5127 Size: 5951 BspMI ACCTGCnnnn'nnnn_ Cuts at: 854 899 942 2523 3001 3215 3517 3898 854 Size: 45 43 1581 478 214 302 381 2907 Fragments arranged by size: 2907 1581 478 381 302 214 45 43 BsrBI CCG'CTC Cuts at: 50 115 138 675 4243 4297 5781 5946 50 Size: 65 23 537 3568 54 1484 165 55 Fragments arranged by size: 3568 1484 537 165 65 55 54 23 BsrDI GCAATG_nn' Cuts at: 509 3863 509 Size: 3354 2597 BsrFI r'CCGG_y Cuts at: 1376 1986 2103 2612 3949 4130 4339 1376 Size: 610 117 509 1337 181 209 2988 Fragments arranged by size: 2988 1337 610 509 209 181 117 BssHII G'CGCG_C Cuts at: 832 832 Size: 5951 BssSI C'ACGA_G Cuts at: 1489 2434 4222 4580 1489 Size: 945 1788 358 2860 Fragments arranged by size: 2860 1788 945 358 BstAPI GCAn_nnn'nTGC Cuts at: 564 1275 3328 564 Size: 711 2053 3187 Fragments arranged by size: 3187 2053 711 BstBI TT'CG_AA Cuts at: 4312 4312 Size: 5951 BstXI CCAn_nnnn'nTGG Cuts at: 804 2259 2782 804 Size: 1455 523 3973 Fragments arranged by size: 3973 1455 523 BstYI r'GATC_y Cuts at: 1 549 1044 1148 1766 2976 3443 3466 3801 Size: 548 495 104 618 1210 467 23 335 Cuts at: 3801 4047 5059 5145 5157 5503 1 Size: 246 1012 86 12 346 449 Fragments arranged by size: 1210 1012 618 548 495 467 449 346 335 246 104 86 23 12 Bsu36I CC'TnA_GG Cuts at: 2636 2636 Size: 5951 BtgI C'CryG_G Cuts at: 107 336 2642 107 Size: 229 2306 3416 Fragments arranged by size: 3416 2306 229 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 2060 3901 4082 4245 2060 Size: 1841 181 163 3766 Fragments arranged by size: 3766 1841 181 163 BtsI GCAGTG_nn' Cuts at: 408 1264 1814 3194 408 Size: 856 550 1380 3165 Fragments arranged by size: 3165 1380 856 550 DraI TTT'AAA Cuts at: 2950 2950 Size: 5951 DrdI GACnn_nn'nnGTC Cuts at: 3657 4515 3657 Size: 858 5093 EaeI y'GGCC_r Cuts at: 110 317 479 605 971 1398 1838 2075 2614 Size: 207 162 126 366 427 440 237 539 Cuts at: 2614 3536 3710 4101 4128 5473 110 Size: 922 174 391 27 1345 588 Fragments arranged by size: 1345 922 588 539 440 427 391 366 237 207 174 162 126 27 EagI C'GGCC_G Cuts at: 971 3536 971 Size: 2565 3386 EarI CTCTTCn'nnn_ Cuts at: 535 1570 1888 2017 3974 4184 535 Size: 1035 318 129 1957 210 2302 Fragments arranged by size: 2302 1957 1035 318 210 129 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 2238 2305 2761 4159 4469 4615 5761 2238 Size: 67 456 1398 310 146 1146 2428 Fragments arranged by size: 2428 1398 1146 456 310 146 67 EcoICRI GAG'CTC Cuts at: 576 597 755 1652 2751 2963 576 Size: 21 158 897 1099 212 3564 Fragments arranged by size: 3564 1099 897 212 158 21 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 232 315 574 583 601 1034 1276 1300 1423 Size: 83 259 9 18 433 242 24 123 Cuts at: 1423 1495 1870 1891 1948 2296 2362 3776 4208 Size: 72 375 21 57 348 66 1414 432 Cuts at: 4208 4955 5223 232 Size: 747 268 960 Fragments arranged by size: 1414 960 747 433 432 375 348 268 259 242 123 83 72 66 57 24 21 18 9 EcoNI CCTnn'n_nnAGG Cuts at: 469 763 949 1279 469 Size: 294 186 330 5141 Fragments arranged by size: 5141 330 294 186 EcoO109I rG'GnC_Cy Cuts at: 303 485 739 740 1008 1038 1272 1506 1794 Size: 182 254 1 268 30 234 234 288 Cuts at: 1794 2121 2441 2484 2586 2647 2778 2816 2832 Size: 327 320 43 102 61 131 38 16 Cuts at: 2832 2877 2878 2885 2886 2919 3090 303 Size: 45 1 7 1 33 171 3164 Fragments arranged by size: 3164 327 320 288 268 254 234 234 182 171 131 102 61 45 43 38 33 30 16 7 1 1 1 EcoRI G'AATT_C Cuts at: 2955 2955 Size: 5951 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 1875 2769 3970 1875 Size: 894 1201 3856 Fragments arranged by size: 3856 1201 894 FspI TGC'GCA Cuts at: 3732 3732 Size: 5951 HaeII r_GCGC'y Cuts at: 273 327 501 531 2134 3385 3633 4655 5634 Size: 54 174 30 1603 1251 248 1022 979 Cuts at: 5634 273 Size: 590 Fragments arranged by size: 1603 1251 1022 979 590 248 174 54 30 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 534 566 1448 1480 1816 1848 3793 3823 3825 Size: 32 882 32 336 32 1945 30 2 Cuts at: 3825 3855 534 Size: 30 2630 Fragments arranged by size: 2630 1945 882 336 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 867 2990 867 Size: 2123 3828 HindIII A'AGCT_T Cuts at: 372 372 Size: 5951 KasI G'GCGC_C Cuts at: 269 527 3381 3629 269 Size: 258 2854 248 2591 Fragments arranged by size: 2854 2591 258 248 KpnI G_GTAC'C Cuts at: 2971 2971 Size: 5951 MluI A'CGCG_T Cuts at: 5384 5384 Size: 5951 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 4622 4806 4622 Size: 184 5767 MscI TGG'CCA Cuts at: 3712 3712 Size: 5951 MslI CAynn'nnrTG Cuts at: 1124 3940 4067 1124 Size: 2816 127 3008 Fragments arranged by size: 3008 2816 127 MspA1I CmG'CkG Cuts at: 189 201 564 721 976 1104 1939 2113 2154 Size: 12 363 157 255 128 835 174 41 Cuts at: 2154 2255 2274 3062 3376 3736 4749 4994 189 Size: 101 19 788 314 360 1013 245 1146 Fragments arranged by size: 1146 1013 835 788 363 360 314 255 245 174 157 128 101 41 19 12 NaeI GCC'GGC Cuts at: 1378 4132 1378 Size: 2754 3197 NarI GG'CG_CC Cuts at: 270 528 3382 3630 270 Size: 258 2854 248 2591 Fragments arranged by size: 2854 2591 258 248 NcoI C'CATG_G Cuts at: 107 2642 107 Size: 2535 3416 NgoMIV G'CCGG_C Cuts at: 1376 4130 1376 Size: 2754 3197 NspI r_CATG'y Cuts at: 1084 2481 3004 3504 4411 1084 Size: 1397 523 500 907 2624 Fragments arranged by size: 2624 1397 907 523 500 PasI CC'CwG_GG Cuts at: 945 2881 2916 945 Size: 1936 35 3980 Fragments arranged by size: 3980 1936 35 PciI A'CATG_T Cuts at: 4407 4407 Size: 5951 PflMI CCAn_nnn'nTGG Cuts at: 1827 1827 Size: 5951 PfoI T'CCnGG_A Cuts at: 578 662 1439 578 Size: 84 777 5090 Fragments arranged by size: 5090 777 84 PmeI GTTT'AAAC Cuts at: 2950 2950 Size: 5951 PmlI CAC'GTG Cuts at: 1956 2700 1956 Size: 744 5207 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2719 2751 5090 5122 2719 Size: 32 2339 32 3548 Fragments arranged by size: 3548 2339 32 32 PpuMI rG'GwC_Cy Cuts at: 1794 2121 2647 1794 Size: 327 526 5098 Fragments arranged by size: 5098 526 327 PshAI GACnn'nnGTC Cuts at: 166 2767 166 Size: 2601 3350 PspOMI G'GGCC_C Cuts at: 484 739 2089 2815 2877 2885 484 Size: 255 1350 726 62 8 3550 Fragments arranged by size: 3550 1350 726 255 62 8 PspXI vC'TCGA_Gb Cuts at: 2445 2445 Size: 5951 PstI C_TGCA'G Cuts at: 149 221 248 431 569 1271 1481 1502 1718 Size: 72 27 183 138 702 210 21 216 Cuts at: 1718 2138 2555 2562 2998 3683 149 Size: 420 417 7 436 685 2417 Fragments arranged by size: 2417 702 685 436 420 417 216 210 183 138 72 27 21 7 PvuI CG_AT'CG Cuts at: 104 2184 104 Size: 2080 3871 PvuII CAG'CTG Cuts at: 189 201 564 2154 2255 2274 3376 3736 189 Size: 12 363 1590 101 19 1102 360 2404 Fragments arranged by size: 2404 1590 1102 363 360 101 19 12 RsrII CG'GwC_CG Cuts at: 4146 4146 Size: 5951 SacI G_AGCT'C Cuts at: 578 599 757 1654 2753 2965 578 Size: 21 158 897 1099 212 3564 Fragments arranged by size: 3564 1099 897 212 158 21 SalI G'TCGA_C Cuts at: 2988 2988 Size: 5951 SanDI GG'GwC_CC Cuts at: 2647 2647 Size: 5951 SapI GCTCTTCn'nnn_ Cuts at: 535 1570 3974 4184 535 Size: 1035 2404 210 2302 Fragments arranged by size: 2404 2302 1035 210 SbfI CC_TGCA'GG Cuts at: 2998 2998 Size: 5951 ScaI AGT'ACT Cuts at: 5468 5468 Size: 5951 SfcI C'TryA_G Cuts at: 33 145 217 244 427 565 1267 1477 1498 Size: 112 72 27 183 138 702 210 21 Cuts at: 1498 1714 2134 2551 2558 2994 3679 4672 4863 Size: 216 420 417 7 436 685 993 191 Cuts at: 4863 33 Size: 1121 Fragments arranged by size: 1121 993 702 685 436 420 417 216 210 191 183 138 112 72 27 21 7 SfoI GGC'GCC Cuts at: 271 529 3383 3631 271 Size: 258 2854 248 2591 Fragments arranged by size: 2854 2591 258 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 5951 SgrAI Cr'CCGG_yG Cuts at: 1986 1986 Size: 5951 SmaI CCC'GGG Cuts at: 301 2875 2973 301 Size: 2574 98 3279 Fragments arranged by size: 3279 2574 98 SmlI C'TyrA_G Cuts at: 760 817 1072 1348 2445 3106 4021 4513 4775 Size: 57 255 276 1097 661 915 492 262 Cuts at: 4775 760 Size: 1936 Fragments arranged by size: 1936 1097 915 661 492 276 262 255 57 SpeI A'CTAG_T Cuts at: 67 67 Size: 5951 SphI G_CATG'C Cuts at: 1084 2481 3004 3504 1084 Size: 1397 523 500 3531 Fragments arranged by size: 3531 1397 523 500 StyI C'CwwG_G Cuts at: 107 1064 2642 2781 3085 3439 107 Size: 957 1578 139 304 354 2619 Fragments arranged by size: 2619 1578 957 354 304 139 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 1003 1232 1429 3534 3667 4126 4335 1003 Size: 229 197 2105 133 459 209 2619 Fragments arranged by size: 2619 2105 459 229 209 197 133 TatI w'GTAC_w Cuts at: 1553 2039 5466 1553 Size: 486 3427 2038 Fragments arranged by size: 3427 2038 486 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5468 5500 5468 Size: 32 5919 Tth111I GACn'n_nGTC Cuts at: 3748 3748 Size: 5951 XbaI T'CTAG_A Cuts at: 2982 2982 Size: 5951 XcmI CCAnnnn_n'nnnnTGG Cuts at: 1126 1618 2847 3446 1126 Size: 492 1229 599 3631 Fragments arranged by size: 3631 1229 599 492 XhoI C'TCGA_G Cuts at: 1072 2445 1072 Size: 1373 4578 XmaI C'CCGG_G Cuts at: 299 2873 2971 299 Size: 2574 98 3279 Fragments arranged by size: 3279 2574 98 ZraI GAC'GTC Cuts at: 900 900 Size: 5951 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflIII AgeI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssHII BssSI BstAPI BstBI BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PspOMI PspXI PstI PvuI PvuII RsrII SacI SalI SanDI SapI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SpeI SphI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI ZraI Enzymes that do not cut: AflII AhdI AleI AlfI AloI AscI AvrII BaeI BfrBI BmtI BsiWI BsrGI BstEII BstZ17I ClaI CspCI DraIII EcoRV FseI FspAI HpaI MfeI NdeI NheI NotI NruI NsiI PacI PsiI PsrI SacII SexAI SfiI SnaBI SrfI SspI StuI SwaI XmnI