Result of FASTA (ccds) for
pF1KA0133
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0133, 1524 aa
1>>>pF1KA0133 1524 - 1524 aa - 1524 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8310+/-0.00113; mu= 20.0614+/- 0.068
mean_var=61.6721+/-12.327, 0's: 0 Z-trim(101.5): 47 B-trim: 15 in 2/47
Lambda= 0.163316
statistics sampled from 6522 (6527) to 6522 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.545), E-opt: 0.2 (0.2), width: 16
Scan time: 3.860
The best scores are: opt bits E(32554)
CCDS31052.1 URB2 gene_id:9816|Hs108|chr1 (1524) 9943 2352.2 0
>>CCDS31052.1 URB2 gene_id:9816|Hs108|chr1 (1524 aa)
initn: 9943 init1: 9943 opt: 9943 Z-score: 12643.7 bits: 2352.2 E(32554): 0
Smith-Waterman score: 9943; 100.0% identity (100.0% similar) in 1524 aa overlap (1-1524:1-1524)
10 20 30 40 50 60
pF1KA0 MAAVYSGISLKLKSKTTSWEDKLKLAHFAWISHQCFLPNKEQVLLDWARQSLVAFYKKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAAVYSGISLKLKSKTTSWEDKLKLAHFAWISHQCFLPNKEQVLLDWARQSLVAFYKKKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 ELKEDIVERLWIYIDNILHSRKLQNLLKNGKTINLQISLVKIINERVAEFSLSGSQRNIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELKEDIVERLWIYIDNILHSRKLQNLLKNGKTINLQISLVKIINERVAEFSLSGSQRNIC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 AVLRCCQGILSTPALAVIYTAKQELMVALLSQLCWSACRQPEGAVVAQLFEVIHLALGHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AVLRCCQGILSTPALAVIYTAKQELMVALLSQLCWSACRQPEGAVVAQLFEVIHLALGHY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 LLILQQQVNPRRAFGDVTAHLLQPCLVLRHLLSGGTWTQAGQGQLRQVLSRDIRSQIEAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LLILQQQVNPRRAFGDVTAHLLQPCLVLRHLLSGGTWTQAGQGQLRQVLSRDIRSQIEAM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 FRGGIFQPELLSSYKEGLLDQQQGDVKTGAMKNLLAPMDTVLNRLVDAGYCAASLHTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FRGGIFQPELLSSYKEGLLDQQQGDVKTGAMKNLLAPMDTVLNRLVDAGYCAASLHTSVV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 ANSVALLYKLFLDSYFKEGNQLLCFQVLPRLFGCLKISHLQEEQSKALSTSDWTTELLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ANSVALLYKLFLDSYFKEGNQLLCFQVLPRLFGCLKISHLQEEQSKALSTSDWTTELLVV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 EQLLNSVANNNIYNIAADRIRHEEAQFRFYRHVAELLINHAQAPIPAWFRCLKTLISLNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EQLLNSVANNNIYNIAADRIRHEEAQFRFYRHVAELLINHAQAPIPAWFRCLKTLISLNH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 LILEPDLDDLLASAWIDAEVTEFRTKKAQEALIRTVFQTYAKLRQVPRLFEEVLGVICRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LILEPDLDDLLASAWIDAEVTEFRTKKAQEALIRTVFQTYAKLRQVPRLFEEVLGVICRP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 AAEALRQPVLASGPSTVLSACLLELPPSQILDTWSLVLEKFQSLVLPYLQSDADMALKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAEALRQPVLASGPSTVLSACLLELPPSQILDTWSLVLEKFQSLVLPYLQSDADMALKSL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 SLSLLLHCIMFNMRSLDSSTPLPIVRRTQCMMERMMRELVQPLLALLPDTPGPEPELWLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLSLLLHCIMFNMRSLDSSTPLPIVRRTQCMMERMMRELVQPLLALLPDTPGPEPELWLQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 KVSDSVLLLSYTWAQVDAMFSLNCSQYHSMSGPLIGVALEISNLPSLLPGVKTQHWKKIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KVSDSVLLLSYTWAQVDAMFSLNCSQYHSMSGPLIGVALEISNLPSLLPGVKTQHWKKIE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 KFTAQFSSLGTYCLEQLYLQKMKRTLMQTSFRSEGAIQSLRCDAAFIIGSGRKSLNQRTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KFTAQFSSLGTYCLEQLYLQKMKRTLMQTSFRSEGAIQSLRCDAAFIIGSGRKSLNQRTT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 ASWDGQVGMVSGLTYPVAHWHLIVSNLTILISYLCPDDVGYLASVLLRTLPMGKAQEVSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ASWDGQVGMVSGLTYPVAHWHLIVSNLTILISYLCPDDVGYLASVLLRTLPMGKAQEVSI
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 DEEAYITLEKISKAFLHSPLFPEMQSLHSAFLTCVTTSCSSILCSGAQRDSGLVSQQLPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DEEAYITLEKISKAFLHSPLFPEMQSLHSAFLTCVTTSCSSILCSGAQRDSGLVSQQLPW
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 LFEKDHMVVGHWENRFAKAGPEGIEPRGEIAQNLLSLVKSDFPIQLEGEQLESILGLLEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LFEKDHMVVGHWENRFAKAGPEGIEPRGEIAQNLLSLVKSDFPIQLEGEQLESILGLLEV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 ISALQLDSLLPPYHVHYFLVLLSMAVTKLGCSCSSSLALKFLTTCYQLLGYLQKGKSARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ISALQLDSLLPPYHVHYFLVLLSMAVTKLGCSCSSSLALKFLTTCYQLLGYLQKGKSARS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 VFKIMYGSDIFEVVLTSLFRASSRFLIEMDDPAWLEFLQVIGTFLEELMQMLIQMKLSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VFKIMYGSDIFEVVLTSLFRASSRFLIEMDDPAWLEFLQVIGTFLEELMQMLIQMKLSLV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 LNFRKITAFLSSSKPYTEAASSKQLENQNPQGRQLLLVSLTRLCHVLGPFLKEQKLGQEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LNFRKITAFLSSSKPYTEAASSKQLENQNPQGRQLLLVSLTRLCHVLGPFLKEQKLGQEA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 PAALSELLQQVVLQTGAVLQLCSVPGARGWRLPSVLISSVSTLLEADLGQHCRDGGADIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PAALSELLQQVVLQTGAVLQLCSVPGARGWRLPSVLISSVSTLLEADLGQHCRDGGADIS
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 QGSDRTLLSHVALYQGVYSQILLELPALAGHDQSFQAALQFLTLFFLAPELHPKKDSVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QGSDRTLLSHVALYQGVYSQILLELPALAGHDQSFQAALQFLTLFFLAPELHPKKDSVFT
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 SMFHSVRRVLADPEIPVQVTQDIEPHLGALFTQMLEVGTTEDLRLVMQCILQGLDVSNMW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SMFHSVRRVLADPEIPVQVTQDIEPHLGALFTQMLEVGTTEDLRLVMQCILQGLDVSNMW
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 KADVQAVVSAVTLLRLLLNCPLSGEKASLLWRACPQIVTALTLLNREASQEQPVSLTVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KADVQAVVSAVTLLRLLLNCPLSGEKASLLWRACPQIVTALTLLNREASQEQPVSLTVVG
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 PVLDVLAALLRQGEEAIGNPHHVSLAFSILLTVPLDHLKPLEYGSVFPRLHNVLFSILQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PVLDVLAALLRQGEEAIGNPHHVSLAFSILLTVPLDHLKPLEYGSVFPRLHNVLFSILQC
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 HPKVMLKAIPSFLNSFNRLVFSVMREGRQKDKGSIDDLPTVLKCARLVERMYSHIAARAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HPKVMLKAIPSFLNSFNRLVFSVMREGRQKDKGSIDDLPTVLKCARLVERMYSHIAARAE
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 EFAVFSPFMVAQYVLEVQKVTLYPAVKSLLQEGIYLILDLCIEPDVQFLRASLQPGMRDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EFAVFSPFMVAQYVLEVQKVTLYPAVKSLLQEGIYLILDLCIEPDVQFLRASLQPGMRDI
1450 1460 1470 1480 1490 1500
1510 1520
pF1KA0 FKELYNDYLKYHKAKHEGEKRYTA
::::::::::::::::::::::::
CCDS31 FKELYNDYLKYHKAKHEGEKRYTA
1510 1520
1524 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:13:32 2016 done: Wed Nov 2 18:13:32 2016
Total Scan time: 3.860 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]