Result of FASTA (ccds) for
pF1KA0159
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0159, 1401 aa
1>>>pF1KA0159 1401 - 1401 aa - 1401 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6757+/-0.00107; mu= 16.2383+/- 0.064
mean_var=88.5474+/-17.022, 0's: 0 Z-trim(104.1): 21 B-trim: 9 in 1/51
Lambda= 0.136297
statistics sampled from 7729 (7731) to 7729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.237), width: 16
Scan time: 4.710
The best scores are: opt bits E(32554)
CCDS8548.1 NCAPD2 gene_id:9918|Hs108|chr12 (1401) 9101 1800.7 0
>>CCDS8548.1 NCAPD2 gene_id:9918|Hs108|chr12 (1401 aa)
initn: 9101 init1: 9101 opt: 9101 Z-score: 9664.2 bits: 1800.7 E(32554): 0
Smith-Waterman score: 9101; 99.8% identity (99.9% similar) in 1401 aa overlap (1-1401:1-1401)
10 20 30 40 50 60
pF1KA0 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 DTIYSILHHFRSIDPGLKEDTLEFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS85 DTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTILEKSPLPIVRSNLMVATG
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS85 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATG
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 KQTESLVEKLCQRFRTSLTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS85 KQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
1330 1340 1350 1360 1370 1380
1390 1400
pF1KA0 EDETPKKTTPILRASARRHRS
:::::::::::::::::::::
CCDS85 EDETPKKTTPILRASARRHRS
1390 1400
1401 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:18:40 2016 done: Wed Nov 2 18:18:40 2016
Total Scan time: 4.710 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]