Result of FASTA (ccds) for
pF1KA0232
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0232, 1395 aa
1>>>pF1KA0232 1395 - 1395 aa - 1395 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9147+/-0.00108; mu= 10.3549+/- 0.065
mean_var=134.0592+/-26.898, 0's: 0 Z-trim(107.1): 37 B-trim: 20 in 1/51
Lambda= 0.110771
statistics sampled from 9328 (9344) to 9328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.287), width: 16
Scan time: 5.500
The best scores are: opt bits E(32554)
CCDS43209.1 KIAA0232 gene_id:9778|Hs108|chr4 (1395) 9327 1503.2 0
>>CCDS43209.1 KIAA0232 gene_id:9778|Hs108|chr4 (1395 aa)
initn: 9327 init1: 9327 opt: 9327 Z-score: 8056.8 bits: 1503.2 E(32554): 0
Smith-Waterman score: 9327; 99.9% identity (100.0% similar) in 1395 aa overlap (1-1395:1-1395)
10 20 30 40 50 60
pF1KA0 MYPICTVVVDGLPSESSSSSYPGPVSVSEMSLLHALGPVQTWLGQELEKCGIDAMIYTRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MYPICTVVVDGLPSESSSSSYPGPVSVSEMSLLHALGPVQTWLGQELEKCGIDAMIYTRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 VLSLLLHDSYDYDLQEQENDIFLGWEKGAYKKWGKSKKKCSDLTLEEMKKQAAVQCLRSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VLSLLLHDSYDYDLQEQENDIFLGWEKGAYKKWGKSKKKCSDLTLEEMKKQAAVQCLRSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SDESSGIETLVEELCSRLKDLQSKQEEKIHKKLEGSPSPEAELSPPAKDQVEMYYEAFPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SDESSGIETLVEELCSRLKDLQSKQEEKIHKKLEGSPSPEAELSPPAKDQVEMYYEAFPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 LSEKPVCLQEIMTVWNKSKVCSYSSSSSSSTAPPASTDTSSPKDCNSESEVTKERSSEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LSEKPVCLQEIMTVWNKSKVCSYSSSSSSSTAPPASTDTSSPKDCNSESEVTKERSSEVP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TTVHEKTQSKSKNEKENKFSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TTVHEKTQSKSKNEKENKFSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 GNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHGEKAERNIHTGSSSSSSSGSVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHGEKAERNIHTGSSSSSSSGSVK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 QLCKRGKRPLKEIGRKDPGSTEGKDLYMENRKDTEYKEEPLWYTEPIAEYFVPLSRKSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QLCKRGKRPLKEIGRKDPGSTEGKDLYMENRKDTEYKEEPLWYTEPIAEYFVPLSRKSKL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 ETTYRNRQDTSDLTSEAVEELSESVHGLCISNNNLHKTYLAAGTFIDGHFVEMPAVINED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ETTYRNRQDTSDLTSEAVEELSESVHGLCISNNNLHKTYLAAGTFIDGHFVEMPAVINED
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 IDLTGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILKMIRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS43 IDLTGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 SKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGLFLQDLGNLAQFWECCSSSSGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGLFLQDLGNLAQFWECCSSSSGD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 ADGESFGGDSPVRLSPILDSTVLNSHLLAGNQELFSDINEGSGINSCFSVFEVQCSNSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ADGESFGGDSPVRLSPILDSTVLNSHLLAGNQELFSDINEGSGINSCFSVFEVQCSNSVL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 PFSFETLNLGNENTDSSANMLGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PFSFETLNLGNENTDSSANMLGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEET
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 RSDNETLNIQFEESTQFNAEDINYVVPRVSSNYVDEELLDFLQDETCQQNSRTLGEIPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RSDNETLNIQFEESTQFNAEDINYVVPRVSSNYVDEELLDFLQDETCQQNSRTLGEIPTL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 VFKKTSKLESVCGIQLEQKTENKNFETTQVCNESPHGDGYSSGVIKDIWTKMADTNSVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VFKKTSKLESVCGIQLEQKTENKNFETTQVCNESPHGDGYSSGVIKDIWTKMADTNSVAT
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 VEIERTDAELFSADVNNYCCCLDAEAELETLQEPDKAVRRSEYHLWEGQKESLEKRAFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VEIERTDAELFSADVNNYCCCLDAEAELETLQEPDKAVRRSEYHLWEGQKESLEKRAFAS
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 SELSNVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPSHTKGSLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SELSNVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPSHTKGSLLQ
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 CAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDQPKSGENGLNKGFSFIFHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDQPKSGENGLNKGFSFIFHED
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 LLGACGNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LLGACGNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDS
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 DSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESEKDEANIPIPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESEKDEANIPIPSQ
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 VDIFEDPQADLKPLEEDAEKEGHYYGKSELESGKFLPRLKKSGMEKSAQTSLDSQEESTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VDIFEDPQADLKPLEEDAEKEGHYYGKSELESGKFLPRLKKSGMEKSAQTSLDSQEESTG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 ILSVGKQNQCLECSMNESLEIDLESSEANCKIMAQCEEEINNFCGCKAGCQFPAYEDNPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ILSVGKQNQCLECSMNESLEIDLESSEANCKIMAQCEEEINNFCGCKAGCQFPAYEDNPV
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 SSGQLEEFPVLNTDIQGMNRSQEKQTWWEKALYSPLFPASECEECYTNAKGESGLEEYPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSGQLEEFPVLNTDIQGMNRSQEKQTWWEKALYSPLFPASECEECYTNAKGESGLEEYPD
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 AKETPSNEERLLDFNRVSSVYEARCTGERDSGAKSDGFRGKMCSSASSTSEETGSEGGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AKETPSNEERLLDFNRVSSVYEARCTGERDSGAKSDGFRGKMCSSASSTSEETGSEGGGE
1330 1340 1350 1360 1370 1380
1390
pF1KA0 WVGPSEEELFSRTHL
:::::::::::::::
CCDS43 WVGPSEEELFSRTHL
1390
1395 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:24:08 2016 done: Wed Nov 2 18:24:09 2016
Total Scan time: 5.500 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]