FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0254, 992 aa
  1>>>pF1KA0254 992 - 992 aa - 992 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3684+/-0.000827; mu= 12.6675+/- 0.050
 mean_var=126.8390+/-24.944, 0's: 0 Z-trim(111.6): 21  B-trim: 0 in 0/52
 Lambda= 0.113880
 statistics sampled from 12479 (12496) to 12479 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.384), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS31721.1 SNX19 gene_id:399979|Hs108|chr11       ( 992) 6506 1080.6       0
CCDS73416.1 SNX19 gene_id:399979|Hs108|chr11       ( 372) 2379 402.3 9.3e-112


>>CCDS31721.1 SNX19 gene_id:399979|Hs108|chr11            (992 aa)
 initn: 6506 init1: 6506 opt: 6506  Z-score: 5777.9  bits: 1080.6 E(32554):    0
Smith-Waterman score: 6506; 99.6% identity (99.9% similar) in 992 aa overlap (1-992:1-992)

               10        20        30        40        50        60
pF1KA0 MKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LGGWLGSSLAGVASGRLHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LGGWLGSSLAGVASGRLHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 VSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHLQSYIQAKEATAGKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHLQSYIQAKEATAGKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 GPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 LITCNVILPLISRLSDPDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LITCNVILPLISRLSDPDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 PEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEERKVGNNSSHFLQPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEERKVGNNSSHFLQPN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 LRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASE
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 GAEAEEGPGTETETGLPVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GAEAEEGPGTETETGLPVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 SCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDGPVIIQNLRITGTIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDGPVIIQNLRITGTIT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 AREHSGTGFHPYTLYTVKYETALDGENSSGLQQLAYHTVNRRYREFLNLQTRLEEKPDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AREHSGTGFHPYTLYTVKYETALDGENSSGLQQLAYHTVNRRYREFLNLQTRLEEKPDLR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 KFIKNVKGPKKLFPDLPFGNMDSDRVEARKSLLESFLKQLCAIPEIANSEEVQEFLALNT
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS31 KFIKNVKGPKKLFPDLPLGNMDSDRVEARKSLLESFLKQLCAIPEIANSEEVQEFLALNT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 DARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRSEPQSPTEELSEAETESKPQTEGKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRSEPQSPTEELSEAETESKPQTEGKKA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 SKSRLRFSSSKISPALSVTEAQDKILYCLQEGSVESETLSMSAMESFIEKQTKLLEMQPT
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS31 SKSRLRFSSSKISPALSVTEAQDKILYCLQEGNVESETLSMSAMESFIEKQTKLLEMQPT
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 KAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLLLLLTEQWKWLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLLLLLTEQWKWLC
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 TENMQKFLRLIFGTLVQRWLEVQVANLTSPQRWVQYLRLLQESIWPGGVLPKFPRPVRTQ
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS31 TENMQKFLRLIFGTLVQRWLEVQVANLTSPQRWVQYLLLLQESIWPGGVLPKFPRPVRTQ
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 EQKLAAEKQALQSLMGVLPDLVVEILGVNKCRLSWGLVLESLQQPLINRHLIYCLGDIIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EQKLAAEKQALQSLMGVLPDLVVEILGVNKCRLSWGLVLESLQQPLINRHLIYCLGDIIL
              910       920       930       940       950       960

              970       980       990  
pF1KA0 EFLDLSASVEESAATTSASDTPGNSKRMGVSS
       ::::::::::::::::::::::::::::::::
CCDS31 EFLDLSASVEESAATTSASDTPGNSKRMGVSS
              970       980       990  

>>CCDS73416.1 SNX19 gene_id:399979|Hs108|chr11            (372 aa)
 initn: 2379 init1: 2379 opt: 2379  Z-score: 2119.9  bits: 402.3 E(32554): 9.3e-112
Smith-Waterman score: 2379; 99.5% identity (99.7% similar) in 372 aa overlap (621-992:1-372)

              600       610       620       630       640       650
pF1KA0 TRLEEKPDLRKFIKNVKGPKKLFPDLPFGNMDSDRVEARKSLLESFLKQLCAIPEIANSE
                                     ::::::::::::::::::::::::::::::
CCDS73                               MDSDRVEARKSLLESFLKQLCAIPEIANSE
                                             10        20        30

              660       670       680       690       700       710
pF1KA0 EVQEFLALNTDARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRSEPQSPTEELSEAETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EVQEFLALNTDARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRSEPQSPTEELSEAETE
               40        50        60        70        80        90

              720       730       740       750       760       770
pF1KA0 SKPQTEGKKASKSRLRFSSSKISPALSVTEAQDKILYCLQEGSVESETLSMSAMESFIEK
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS73 SKPQTEGKKASKSRLRFSSSKISPALSVTEAQDKILYCLQEGNVESETLSMSAMESFIEK
              100       110       120       130       140       150

              780       790       800       810       820       830
pF1KA0 QTKLLEMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QTKLLEMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLLL
              160       170       180       190       200       210

              840       850       860       870       880       890
pF1KA0 LLTEQWKWLCTENMQKFLRLIFGTLVQRWLEVQVANLTSPQRWVQYLRLLQESIWPGGVL
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS73 LLTEQWKWLCTENMQKFLRLIFGTLVQRWLEVQVANLTSPQRWVQYLLLLQESIWPGGVL
              220       230       240       250       260       270

              900       910       920       930       940       950
pF1KA0 PKFPRPVRTQEQKLAAEKQALQSLMGVLPDLVVEILGVNKCRLSWGLVLESLQQPLINRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PKFPRPVRTQEQKLAAEKQALQSLMGVLPDLVVEILGVNKCRLSWGLVLESLQQPLINRH
              280       290       300       310       320       330

              960       970       980       990  
pF1KA0 LIYCLGDIILEFLDLSASVEESAATTSASDTPGNSKRMGVSS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS73 LIYCLGDIILEFLDLSASVEESAATTSASDTPGNSKRMGVSS
              340       350       360       370  




992 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:35:56 2016 done: Fri Nov  4 00:35:56 2016
 Total Scan time:  3.300 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]