Result of FASTA (ccds) for
pF1KA0292
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0292, 1960 aa
1>>>pF1KA0292 1960 - 1960 aa - 1960 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.0692+/-0.00107; mu= -10.2198+/- 0.064
mean_var=405.0574+/-81.702, 0's: 0 Z-trim(115.3): 34 B-trim: 0 in 0/53
Lambda= 0.063726
statistics sampled from 15824 (15851) to 15824 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.487), width: 16
Scan time: 5.470
The best scores are: opt bits E(32554)
CCDS14033.1 TCF20 gene_id:6942|Hs108|chr22 (1960) 13403 1247.8 0
CCDS14032.1 TCF20 gene_id:6942|Hs108|chr22 (1938) 13212 1230.2 0
CCDS11188.1 RAI1 gene_id:10743|Hs108|chr17 (1906) 1190 125.0 2.9e-27
>>CCDS14033.1 TCF20 gene_id:6942|Hs108|chr22 (1960 aa)
initn: 13403 init1: 13403 opt: 13403 Z-score: 6671.0 bits: 1247.8 E(32554): 0
Smith-Waterman score: 13403; 99.9% identity (100.0% similar) in 1960 aa overlap (1-1960:1-1960)
10 20 30 40 50 60
pF1KA0 MQSFREQSSYHGNQQSYPQEVHGSSRLEEFSPRQAQMFQNFGGTGGSSGSSGSGSGGGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQSFREQSSYHGNQQSYPQEVHGSSRLEEFSPRQAQMFQNFGGTGGSSGSSGSGSGGGRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 GAAAAAAAMASETSGHQGYQGFRKEAGDFYYMAGNKDPVTTGTPQPPQRRPSGPVQSYGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GAAAAAAAMASETSGHQGYQGFRKEAGDFYYMAGNKDPVTTGTPQPPQRRPSGPVQSYGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 PQGSSFGNQYGSEGHVGQFQAQHSGLGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQGSSFGNQYGSEGHVGQFQAQHSGLGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 QQLRQQLYQSHQPLPQATGQPASSSSHLQPMQRPSTLPSSAAGYQLRVGQFGQHYQSSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QQLRQQLYQSHQPLPQATGQPASSSSHLQPMQRPSTLPSSAAGYQLRVGQFGQHYQSSAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SSSSSSFPSPQRFSQSGQSYDGSYNVNAGSQYEGHNVGSNAQAYGTQSNYSYQPQSMKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SSSSSSFPSPQRFSQSGQSYDGSYNVNAGSQYEGHNVGSNAQAYGTQSNYSYQPQSMKNF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 EQAKIPQGTQQGQQQQQPQQQQHPSQHVMQYTNAATKLPLQSQVGQYNQPEVPVRSPMQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EQAKIPQGTQQGQQQQQPQQQQHPSQHVMQYTNAATKLPLQSQVGQYNQPEVPVRSPMQF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 HQNFSPISNPSPAASVVQSPSCSSTPSPLMQTGENLQCGQGSVPMGSRNRILQLMPQLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HQNFSPISNPSPAASVVQSPSCSSTPSPLMQTGENLQCGQGSVPMGSRNRILQLMPQLSP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 TPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 PQKKTSKRPSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQKKTSKRPSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 STSSDTTYKGGASEKAGSSPAQGAQNEPPRLNASPAAREEATSPGAKDMPLSSDGNPKVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 STSSDTTYKGGASEKAGSSPAQGAQNEPPRLNASPAAREEATSPGAKDMPLSSDGNPKVN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 EKTVGVIVSREAMTGRVEKPGGQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EKTVGVIVSREAMTGRVEKPGGQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 GGSKGNKNGDNNSNHNGEGNGQSGHSAAGPGFTSRTEPSKSPGSLRYSYKDSFGSAVPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GGSKGNKNGDNNSNHNGEGNGQSGHSAAGPGFTSRTEPSKSPGSLRYSYKDSFGSAVPRN
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 VGGFPQYPTGQEKGDFTGHGERKGRNEKFPSLLQEVLQGYHHHPDRRYSRSTQEHQGMAG
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VSGFPQYPTGQEKGDFTGHGERKGRNEKFPSLLQEVLQGYHHHPDRRYSRSTQEHQGMAG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 SLEGTTRPNVLVSQTNELASRGLLNKSIGSLLENPHWGPWERKSSSTAPEMKQINLTDYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLEGTTRPNVLVSQTNELASRGLLNKSIGSLLENPHWGPWERKSSSTAPEMKQINLTDYP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 IPRKFEIEPQSSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMSADTRIGRNDRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IPRKFEIEPQSSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMSADTRIGRNDRL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 NPTLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNNKKSGDHCHPPSIKHES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NPTLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNNKKSGDHCHPPSIKHES
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 YRGNASPGAATHDSLSDYGPQDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKLKMSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YRGNASPGAATHDSLSDYGPQDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKLKMSP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 GRSRGPGGDPHHMNPHMTFSERANRSSLHTPFSPNSETLASAYHANTRAHAYGDPNAGLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GRSRGPGGDPHHMNPHMTFSERANRSSLHTPFSPNSETLASAYHANTRAHAYGDPNAGLN
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 SQLHYKRQMYQQQPEEYKDWSSGSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SQLHYKRQMYQQQPEEYKDWSSGSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDK
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 DGMMYGPPVGTYHDPSAQEAGRCLMSSDGLPNKGMELKHGSQKLQESCWDLSRQTSPAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGMMYGPPVGTYHDPSAQEAGRCLMSSDGLPNKGMELKHGSQKLQESCWDLSRQTSPAKS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 SGPPGMSSQKRYGPPHETDGHGLAEATQSSKPGSVMLRLPGQEDHSSQNPLIMRRRVRSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SGPPGMSSQKRYGPPHETDGHGLAEATQSSKPGSVMLRLPGQEDHSSQNPLIMRRRVRSF
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 ISPIPSKRQSQDVKNSSTEDKGRLLHSSKEGADKAFNSYAHLSHSQDIKSIPKRDSSKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ISPIPSKRQSQDVKNSSTEDKGRLLHSSKEGADKAFNSYAHLSHSQDIKSIPKRDSSKDL
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 PSPDSRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASSNSAEAGGDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PSPDSRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASSNSAEAGGDTV
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 TLDDILSLKSGPPEGGSVAVQDADIEKRKGEVASDLVSPANQELHVEKPLPRSSEEWRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TLDDILSLKSGPPEGGSVAVQDADIEKRKGEVASDLVSPANQELHVEKPLPRSSEEWRGS
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 VDDKVKTETHAETVTAGKEPPGAMTSTTSQKPGSNQGRPDGSLGGTAPLIFPDSKNVPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VDDKVKTETHAETVTAGKEPPGAMTSTTSQKPGSNQGRPDGSLGGTAPLIFPDSKNVPPV
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 GILAPEANPKAEEKENDTVTISPKQEGFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GILAPEANPKAEEKENDTVTISPKQEGFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPP
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 PQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQP
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 LDKTDAKNKSFYPYIHVVNKCELGAVCTIINAEEEEQTKLVRGRKGQRSLTPPPSSTESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LDKTDAKNKSFYPYIHVVNKCELGAVCTIINAEEEEQTKLVRGRKGQRSLTPPPSSTESK
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 ALPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPK
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 RATEMQSKVKVRHKSASNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RATEMQSKVKVRHKSASNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPR
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 SLSRGLPCKKAATEGSSEKTVLDSKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLSRGLPCKKAATEGSSEKTVLDSKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCIL
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KA0 WANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLL
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960
pF1KA0 HEENFSVRCPKHKPPLPCPLPPLQNKTAKGSLSTEQSERG
::::::::::::::::::::::::::::::::::::::::
CCDS14 HEENFSVRCPKHKPPLPCPLPPLQNKTAKGSLSTEQSERG
1930 1940 1950 1960
>>CCDS14032.1 TCF20 gene_id:6942|Hs108|chr22 (1938 aa)
initn: 13212 init1: 13212 opt: 13212 Z-score: 6576.2 bits: 1230.2 E(32554): 0
Smith-Waterman score: 13212; 99.9% identity (100.0% similar) in 1933 aa overlap (1-1933:1-1933)
10 20 30 40 50 60
pF1KA0 MQSFREQSSYHGNQQSYPQEVHGSSRLEEFSPRQAQMFQNFGGTGGSSGSSGSGSGGGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQSFREQSSYHGNQQSYPQEVHGSSRLEEFSPRQAQMFQNFGGTGGSSGSSGSGSGGGRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 GAAAAAAAMASETSGHQGYQGFRKEAGDFYYMAGNKDPVTTGTPQPPQRRPSGPVQSYGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GAAAAAAAMASETSGHQGYQGFRKEAGDFYYMAGNKDPVTTGTPQPPQRRPSGPVQSYGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 PQGSSFGNQYGSEGHVGQFQAQHSGLGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQGSSFGNQYGSEGHVGQFQAQHSGLGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 QQLRQQLYQSHQPLPQATGQPASSSSHLQPMQRPSTLPSSAAGYQLRVGQFGQHYQSSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QQLRQQLYQSHQPLPQATGQPASSSSHLQPMQRPSTLPSSAAGYQLRVGQFGQHYQSSAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SSSSSSFPSPQRFSQSGQSYDGSYNVNAGSQYEGHNVGSNAQAYGTQSNYSYQPQSMKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SSSSSSFPSPQRFSQSGQSYDGSYNVNAGSQYEGHNVGSNAQAYGTQSNYSYQPQSMKNF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 EQAKIPQGTQQGQQQQQPQQQQHPSQHVMQYTNAATKLPLQSQVGQYNQPEVPVRSPMQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EQAKIPQGTQQGQQQQQPQQQQHPSQHVMQYTNAATKLPLQSQVGQYNQPEVPVRSPMQF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 HQNFSPISNPSPAASVVQSPSCSSTPSPLMQTGENLQCGQGSVPMGSRNRILQLMPQLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HQNFSPISNPSPAASVVQSPSCSSTPSPLMQTGENLQCGQGSVPMGSRNRILQLMPQLSP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 TPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 PQKKTSKRPSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQKKTSKRPSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 STSSDTTYKGGASEKAGSSPAQGAQNEPPRLNASPAAREEATSPGAKDMPLSSDGNPKVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 STSSDTTYKGGASEKAGSSPAQGAQNEPPRLNASPAAREEATSPGAKDMPLSSDGNPKVN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 EKTVGVIVSREAMTGRVEKPGGQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EKTVGVIVSREAMTGRVEKPGGQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 GGSKGNKNGDNNSNHNGEGNGQSGHSAAGPGFTSRTEPSKSPGSLRYSYKDSFGSAVPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GGSKGNKNGDNNSNHNGEGNGQSGHSAAGPGFTSRTEPSKSPGSLRYSYKDSFGSAVPRN
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 VGGFPQYPTGQEKGDFTGHGERKGRNEKFPSLLQEVLQGYHHHPDRRYSRSTQEHQGMAG
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VSGFPQYPTGQEKGDFTGHGERKGRNEKFPSLLQEVLQGYHHHPDRRYSRSTQEHQGMAG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 SLEGTTRPNVLVSQTNELASRGLLNKSIGSLLENPHWGPWERKSSSTAPEMKQINLTDYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLEGTTRPNVLVSQTNELASRGLLNKSIGSLLENPHWGPWERKSSSTAPEMKQINLTDYP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 IPRKFEIEPQSSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMSADTRIGRNDRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IPRKFEIEPQSSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMSADTRIGRNDRL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 NPTLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNNKKSGDHCHPPSIKHES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NPTLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNNKKSGDHCHPPSIKHES
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 YRGNASPGAATHDSLSDYGPQDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKLKMSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YRGNASPGAATHDSLSDYGPQDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKLKMSP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 GRSRGPGGDPHHMNPHMTFSERANRSSLHTPFSPNSETLASAYHANTRAHAYGDPNAGLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GRSRGPGGDPHHMNPHMTFSERANRSSLHTPFSPNSETLASAYHANTRAHAYGDPNAGLN
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 SQLHYKRQMYQQQPEEYKDWSSGSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SQLHYKRQMYQQQPEEYKDWSSGSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDK
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 DGMMYGPPVGTYHDPSAQEAGRCLMSSDGLPNKGMELKHGSQKLQESCWDLSRQTSPAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGMMYGPPVGTYHDPSAQEAGRCLMSSDGLPNKGMELKHGSQKLQESCWDLSRQTSPAKS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 SGPPGMSSQKRYGPPHETDGHGLAEATQSSKPGSVMLRLPGQEDHSSQNPLIMRRRVRSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SGPPGMSSQKRYGPPHETDGHGLAEATQSSKPGSVMLRLPGQEDHSSQNPLIMRRRVRSF
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 ISPIPSKRQSQDVKNSSTEDKGRLLHSSKEGADKAFNSYAHLSHSQDIKSIPKRDSSKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ISPIPSKRQSQDVKNSSTEDKGRLLHSSKEGADKAFNSYAHLSHSQDIKSIPKRDSSKDL
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 PSPDSRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASSNSAEAGGDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PSPDSRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASSNSAEAGGDTV
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 TLDDILSLKSGPPEGGSVAVQDADIEKRKGEVASDLVSPANQELHVEKPLPRSSEEWRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TLDDILSLKSGPPEGGSVAVQDADIEKRKGEVASDLVSPANQELHVEKPLPRSSEEWRGS
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 VDDKVKTETHAETVTAGKEPPGAMTSTTSQKPGSNQGRPDGSLGGTAPLIFPDSKNVPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VDDKVKTETHAETVTAGKEPPGAMTSTTSQKPGSNQGRPDGSLGGTAPLIFPDSKNVPPV
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 GILAPEANPKAEEKENDTVTISPKQEGFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GILAPEANPKAEEKENDTVTISPKQEGFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPP
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 PQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQP
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 LDKTDAKNKSFYPYIHVVNKCELGAVCTIINAEEEEQTKLVRGRKGQRSLTPPPSSTESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LDKTDAKNKSFYPYIHVVNKCELGAVCTIINAEEEEQTKLVRGRKGQRSLTPPPSSTESK
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 ALPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPK
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 RATEMQSKVKVRHKSASNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RATEMQSKVKVRHKSASNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPR
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 SLSRGLPCKKAATEGSSEKTVLDSKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLSRGLPCKKAATEGSSEKTVLDSKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCIL
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KA0 WANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLL
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960
pF1KA0 HEENFSVRCPKHKPPLPCPLPPLQNKTAKGSLSTEQSERG
:::::::::::::
CCDS14 HEENFSVRCPKHKVRLWR
1930
>>CCDS11188.1 RAI1 gene_id:10743|Hs108|chr17 (1906 aa)
initn: 1159 init1: 434 opt: 1190 Z-score: 602.9 bits: 125.0 E(32554): 2.9e-27
Smith-Waterman score: 1663; 27.0% identity (52.8% similar) in 2067 aa overlap (1-1933:1-1903)
10 20 30 40 50
pF1KA0 MQSFREQSSYHGNQQSYPQEVHGSSRLEEF-SPRQA------QMFQNFGGTGGSSGSSGS
::::::. ..::.::.: : . .::::.. .: :: : . . . :
CCDS11 MQSFRERCGFHGKQQNYQQTSQETSRLENYRQPSQAGLSCDRQRLLAKDYYNPQPYPSYE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA0 GSGGGRRGAAAAAAAMASETSGHQGYQGFRKEAGDFYYMAGNKDPVTTGTPQPPQRRPSG
:..: :.:::.:: . :.: ... . : : : ..: : .
CCDS11 GGAGTPSGTAAAVAA----DKYHRGSKALPTQQGLQGRPAFPGYGVQDSSPYPGRYAGEE
70 80 90 100 110
120 130 140 150 160 170
pF1KA0 PVQSYGPPQGSSFGNQYGSEGHVGQFQAQHSGLGGVSHYQQDYTGPFS-PGSAQYQQQAS
.:..: :: : : .: :..:... . : : :: .:..
CCDS11 SLQAWGAPQPPP-----------PQPQPLPAG---VAKYDENLMKKTAVPPSRQYAEQGA
120 130 140 150 160
180 190 200 210 220 230
pF1KA0 SQQQQQQVQQLRQQLYQSHQPLPQATGQPASSSSHLQPMQRPSTLPSSAAGYQLRVG-QF
:: ..:. .. : :: :: . . .:: . . :. . : .:
CCDS11 ------QVPFRTHSLHVQQPPPPQ---QPLAYPK----LQRQKLQNDIASPLPFPQGTHF
170 180 190 200
240 250 260 270 280
pF1KA0 GQHYQSSASSSSSSSFPSPQRFSQSGQSYDGSYNVNAGSQYEGHNVGSNAQAYG--TQSN
:: :: .::. :: : : .:...:: : .. ... .. ..:.. : : .:.
CCDS11 PQHSQSFPTSSTYSS--SVQGGGQGAHSYK-SCTAPTAQPHDRPLTASSSLAPGQRVQNL
210 220 230 240 250 260
290 300 310 320 330 340
pF1KA0 YSYQPQSMKNFEQAKIPQGTQQGQQQQQPQQQQHPSQHVMQYTNAATKLPLQSQVGQ-YN
..:: . ...: . : :: ::::: :..: .:....: : : : .: :: :
CCDS11 HAYQSGRL-SYDQQQ--QQQQQQQQQQQALQSRHHAQETLHYQNLA-KYQHYGQQGQGYC
270 280 290 300 310 320
350 360 370 380 390 400
pF1KA0 QPEVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQTGENLQCGQ-----GSV
::.. ::.: :..:.::: :. ::: :: .::: :::::::: . ::. .: :.
CCDS11 QPDAAVRTPEQYYQTFSPSSSHSPARSVGRSPSYSSTPSPLMPNLENFPYSQQPLSTGAF
330 340 350 360 370 380
410 420 430 440 450 460
pF1KA0 PMGSRNRILQLMPQLSPTPS-MMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQ
: : .. ..:: :.:.:. : ...:.. : . . .::. :.: .:.::.::..:
CCDS11 PAGITDHS-HFMPLLNPSPTDATSSVDTQAGNCKPLQKDKLPENLLSDLSLQSLTALTSQ
390 400 410 420 430 440
470 480 490 500 510
pF1KA0 VANLPNTVQHMLLSDALTPQKKTSK----RPSSSKKADSCTNSEGSSQPEEQLKSPMAES
: :. ::::..::: : .:::: : : ..:.. :. :::. : .:..:
CCDS11 VENISNTVQQLLLSKAAVPQKKGVKNLVSRTPEQHKSQHCS-PEGSGYSAEPAGTPLSEP
450 460 470 480 490 500
520 530 540 550 560 570
pF1KA0 LDGGCSSSSEDQGERVRQLSGQSTSSDTTYKGGASEKAGSSPAQGAQN---EPPRLNASP
.. .:.. . ... :::. . .. ..: .:::. .: .: ...
CCDS11 -PSSTPQSTHAEPQEADYLSGSEDPLERSFL--YCNQARGSPARVNSNSKAKPESVSTCS
510 520 530 540 550
580 590 600 610
pF1KA0 AAREEATSPGAKD--------MPLSSDGNPKVNEKTVGVIV----SREAMTGRV----EK
.. . : . : .::.: .. ..:. .. ..: ..... :
CCDS11 VTSPDDMSTKSDDSFQSLHGSLPLDSFSKFVAGERDCPRLLLSALAQEDLASEILGLQEA
560 570 580 590 600 610
620 630 640 650 660 670
pF1KA0 PGGQDKGSQEDDPAATQ---RPP---SNGGAKETSHASLPQPEPPGGGGSKGNKNGDNNS
: . . . :. .. .:: : .: : :. :.: . . . :...
CCDS11 IGEKADKAWAEAPSLVKDSSKPPFSLENHSACLDSVAKSAWPRPGEPEALPDSLQLDKGG
620 630 640 650 660 670
680 690 700 710 720 730
pF1KA0 NHNGEGNGQSGHSAAGPGFTSRTEPSKSPGSLRYSYKDSFGSAVPR-NVGGFPQYP--TG
: . . : ... :.. .:.:. : : .. : ..: .: ....: .: :.
CCDS11 NAKDFSPGLFEDPSVA--FAT-PDPKKTTGPLSFGTKPTLGVPAPDPTTAAFDCFPDTTA
680 690 700 710 720 730
740 750 760 770 780
pF1KA0 QEKGD----FTGHGERKG----RNEKFPSLLQEVLQGYHHHPDRRYSRSTQEHQGMAGSL
..: :. : : : :. : . :. . : . .:.: .. :
CCDS11 ASSADSANPFAWPEENLGDACPRWGLHPGELTKGLEQGGKASDGISKGDTHEASACLGFQ
740 750 760 770 780 790
790 800 810 820 830
pF1KA0 EGTTRPNVLVSQTNELASR--GLLNKSIGSLLENPH------WGPWERKSSSTAPEMKQI
: . ..: ... .. : ... :.::. :. : :. ::: .. ..
CCDS11 EEDPPGEKVASLPGDFKQEEVGGVKEEAGGLLQCPEVAKADRWLEDSRHCCSTA-DFGDL
800 810 820 830 840 850
840 850 860 870 880
pF1KA0 NLTDYPIPRKFEIEPQ---SSAHEPGGSLSERRSVICDISPLRQIV--RDPGAHSLGHMS
: : :: ..: . :: : :: .: .. .:: .. .. . :
CCDS11 PLLP-PTSRKEDLEAEEEYSSLCELLGSPEQRPGMQDPLSPKAPLICTKEEVEEVL----
860 870 880 890 900
890 900 910 920 930 940
pF1KA0 ADTRIGRNDRLNPTLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNNKKSGD
:.. : .. . . ..:::: : :. :.:..: ::.: :
CCDS11 -DSKAGWGSPCHLS-GESVILLGPTVGTESKVQSW--------FESSLS-----------
910 920 930 940
950 960 970 980 990 1000
pF1KA0 HCHPPSIKHESYRGNASPGAATHDSLSDYGPQDSRPTPMRRVPGRVGGREGM-RGRS--P
: .: .:. :. .:: .: : .. . . ..:. . ..: .. .: . ::.:
CCDS11 HMKPG---EEGPDGERAPGDST-TSDASLAQKPNKPA-VPEAP--IAKKEPVPRGKSLRS
950 960 970 980 990 1000
1010 1020 1030 1040 1050 1060
pF1KA0 SQYHDFAEKLKMSPGRSRGPGGDPHHMNPHM-TFSERANRSSLHTPFSPNSETL----AS
. : . . :: :.: . :. : ... . .: :: : .
CCDS11 RRVHRGLPEAEDSP--CRAPVLPKDLLLPESCTGPPQGQMEGAGAPGRGASEGLPRMCTR
1010 1020 1030 1040 1050
1070 1080 1090 1100 1110 1120
pF1KA0 AYHANTRAHAYGDPNAGLNSQLHYKRQMYQQQPEEYKDWSSGSAQGVIAAAQHRQEGPR-
. : .. .. : : ::.. .. .: .: ::. : . .:.
CCDS11 SLTALSEPRTPGPP--GLTTTPAPPDKLGGKQRAAFK---SGKRVG--------KPSPKA
1060 1070 1080 1090 1100
1130 1140 1150 1160 1170
pF1KA0 -KSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPSAQEAGRCLMSSDGLPNKGMELKH
.:: . : :. .:.. : : . .:: . : ...: :.
CCDS11 ASSPSNPAAL-----PVASDSSPM--GSKTKETDSPS----------TPGKDQRSMILR-
1110 1120 1130 1140
1180 1190 1200 1210 1220 1230
pF1KA0 GSQKLQESCWDLSRQTSPAKSSGPPGMSSQKRYGPPHETDGHGLAEATQSSKPGSVMLRL
. : :: :.. :... : ...: : .. . : : : : :
CCDS11 SRTKTQEIFH--SKRRRPSEGRLPNCRATKKLLDNSHLPATFKVSSSPQ--KEGRVSQRA
1150 1160 1170 1180 1190 1200
1240 1250 1260 1270 1280 1290
pF1KA0 ----PGQEDHSSQNPLIMRRRVRSFISPIPSKRQSQDVKN---SSTEDKGRLLHSSKEGA
:: .. :. :: .: .:..:.:.:... ... ::.. .: ...:
CCDS11 RVPKPGAGSKLSDRPLHALKRKSAFMAPVPTKKRNLVLRSRSSSSSNASGNGGDGKEERP
1210 1220 1230 1240 1250 1260
1300 1310 1320 1330 1340
pF1KA0 DKAFNSYAHLSHSQDIKSIPKRDSSKD---LPSPDSRN-C----PAVTLTSPAKTKILPP
. . . . ..: . :. : . ... :: :.. . : ... . :::.:::
CCDS11 EGSPTLFKRMSSPK--KAKPTKGNGEPATKLPPPETPDACLKLASRAAFQGAMKTKVLPP
1270 1280 1290 1300 1310 1320
1350 1360 1370 1380 1390
pF1KA0 RKGRGLKLEAIVQKITSPNIRRSASSNSAEAGGDTVT--LDDI---LSLKSGPPEG---G
::::::::::::::::::.... : . . . :. .. :.: :. .: : : :
CCDS11 RKGRGLKLEAIVQKITSPSLKKFACKAPGASPGNPLSPSLSDKDRGLKGAGGSPVGVEEG
1330 1340 1350 1360 1370 1380
1400 1410 1420 1430 1440 1450
pF1KA0 SVAVQDADIEKRKGEVASDLV-SPANQELHVEKPLPRSSEEWRGSVDDKVKTETHAETVT
: : .. .: :. : .:.:. : . : :. . : : ::: : :
CCDS11 LVNVGTGQKLPTSG--ADPLCRNPTNRSL--KGKLMNSK---KLSSTDCFKTE--AFTSP
1390 1400 1410 1420 1430
1460 1470 1480 1490 1500 1510
pF1KA0 AGKEPPGAMTSTTSQKPGSNQGRPDGSLG-GTAPLIFPDSKNVPPVGILAPEANPKAEEK
. .: : .. . : : .:: :. : . .:: . :. .:.:. ..
CCDS11 EALQPGG---TALAPKKRSRKGRA-GAHGLSKGPL--EKRPYLGPALLLTPR------DR
1440 1450 1460 1470 1480
1520 1530 1540 1550 1560 1570
pF1KA0 ENDTVTISPKQEGFPPKGYFPSGKK-KGRPIGSVNKQKKQQQPPPPPPQPPQIPEGSADG
. : : . : : .::: : . .: . .: . .: : . . : : ..
CCDS11 ASGTQGASEDNSG----G---GGKKPKMEELG-LASQPPEGRPCQPQTRAQKQP-GHTNY
1490 1500 1510 1520 1530
1580 1590 1600 1610 1620
pF1KA0 EPKPKKQRQRRERRK-----PGAQPRKRKTKQAVPIVEPQEPEIKLKYATQ-PLDKTDAK
:..: : : : : ::. .: : ..: ::::.::: .. ..:..
CCDS11 SSYSKRKRLTRGRAKNTTSSPCKGRAKRRRQQQVLPLDPAEPEIRLKYISSCKRLRSDSR
1540 1550 1560 1570 1580 1590
1630 1640 1650 1660 1670
pF1KA0 NKSFYPYIHVVNKCELGAVCTIINAE------EEEQTKLVRGRKGQRSLT----------
. .: :...: .. . ..::..:. ... .. . . ... :..
CCDS11 TPAFSPFVRVEKRDAFTTICTVVNSPGDAPKPHRKPSSSASSSSSSSSFSLDAAGASLAT
1600 1610 1620 1630 1640 1650
1680 1690 1700 1710 1720
pF1KA0 -PPPSSTESK-ALPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDY
: : . . .:: :: : ::::... . :::::: . :.....::: ::.::.
CCDS11 LPGGSILQPRPSLPLSSTMHLGPVVSKALSTSCLVCCLCQNPANFKDLGDLCGPYYPEH-
1660 1670 1680 1690 1700 1710
1730 1740 1750 1760 1770 1780
pF1KA0 AATLPKNPPPKRATEMQSKVKVRHKSASNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRR
:::. : :...: .:. .. :. . : . :. . :
CCDS11 --CLPKKKP-----------KLKEKVRPEGTCEEASLPLERTLKGPECAAAATAGKPPRP
1720 1730 1740 1750
1790 1800 1810 1820 1830 1840
pF1KA0 HRSED-CGGGP-RSLSRGLPCKKAATEGSSEKTVLDSKPSVPTTSEGGPELELQIPELPL
: :: :. .::: .. . . .. ..:. . : . : :
CCDS11 DGPADPAKQGPLRTSARGLS-RRLQSCYCCDGREDGGEEAAPADKGRKHECSKEAPAEPG
1760 1770 1780 1790 1800 1810
1850 1860 1870 1880 1890 1900
pF1KA0 -DSNEFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSF
...: ::::.: .:..:.::: :.:.:::::...: .: :: :::::::.:: .:::
CCDS11 GEAQEHWVHEACAVWTGGVYLVAGKLFGLQEAMKVAVDMMCSSCQEAGATIGCCHKGCLH
1820 1830 1840 1850 1860 1870
1910 1920 1930 1940 1950 1960
pF1KA0 RYHYPCAIDADCLLHEENFSVRCPKHKPPLPCPLPPLQNKTAKGSLSTEQSERG
:::::: :: :.. :::::..:::::
CCDS11 TYHYPCASDAGCIFIEENFSLKCPKHKRLP
1880 1890 1900
1960 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:39:44 2016 done: Sat Nov 5 06:39:45 2016
Total Scan time: 5.470 Total Display time: 0.220
Function used was FASTA [36.3.4 Apr, 2011]