Result of FASTA (ccds) for
pF1KA0335
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0335, 1483 aa
1>>>pF1KA0335 1483 - 1483 aa - 1483 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.9701+/-0.00168; mu= -3.5473+/- 0.096
mean_var=472.5171+/-117.143, 0's: 0 Z-trim(106.1): 437 B-trim: 0 in 0/50
Lambda= 0.059002
statistics sampled from 8338 (8806) to 8338 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.271), width: 16
Scan time: 4.170
The best scores are: opt bits E(32554)
CCDS73170.1 ZNF518A gene_id:9849|Hs108|chr10 (1483) 9860 856.6 0
>>CCDS73170.1 ZNF518A gene_id:9849|Hs108|chr10 (1483 aa)
initn: 9860 init1: 9860 opt: 9860 Z-score: 4560.9 bits: 856.6 E(32554): 0
Smith-Waterman score: 9860; 100.0% identity (100.0% similar) in 1483 aa overlap (1-1483:1-1483)
10 20 30 40 50 60
pF1KA0 MPSEQKQLFCDEKQTTLKKDYDVKNEIVDRSAPKPKISGSIHYALKNVKIDLPKINIPNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MPSEQKQLFCDEKQTTLKKDYDVKNEIVDRSAPKPKISGSIHYALKNVKIDLPKINIPNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 VLLKHEVDKYRKLFQSKQQTARKSISIKTVSCVEECTLLHKSERAEEEGVKMSAKILNFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VLLKHEVDKYRKLFQSKQQTARKSISIKTVSCVEECTLLHKSERAEEEGVKMSAKILNFS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 CLKCRDNTRYSPNDLQKHFQMWHHGELPSYPCEMCNFSANDFQVFKQHRRTHRSTLVKCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CLKCRDNTRYSPNDLQKHFQMWHHGELPSYPCEMCNFSANDFQVFKQHRRTHRSTLVKCD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 ICNNESVYTLLNLTKHFTSTHCVNGNFQCEKCKFSTQDVGTFVQHIHRHNEIHYKCGKCH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ICNNESVYTLLNLTKHFTSTHCVNGNFQCEKCKFSTQDVGTFVQHIHRHNEIHYKCGKCH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 HVCFTKGELQKHLHIHSGTFPFTCQYCSYGATRREHLVRHVITLHKEHLYAKEKLEKDKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HVCFTKGELQKHLHIHSGTFPFTCQYCSYGATRREHLVRHVITLHKEHLYAKEKLEKDKY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 EKRMAKTSAGLKLILKRYKIGASRKTFWKRKKINSGSDRSIEKNTQVLKKMNKTQTKSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EKRMAKTSAGLKLILKRYKIGASRKTFWKRKKINSGSDRSIEKNTQVLKKMNKTQTKSED
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 QSHVVQEHLSEEKDERLHCENNDKAPESESEKPTPLSTGQGNRAEEGPNASSGFMKTAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QSHVVQEHLSEEKDERLHCENNDKAPESESEKPTPLSTGQGNRAEEGPNASSGFMKTAVL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 GPTLKNVMMKNNKLAVSPNYNATFMGFKMMDGKQHIVLKLVPIKQNVCSPGSQSGAAKDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GPTLKNVMMKNNKLAVSPNYNATFMGFKMMDGKQHIVLKLVPIKQNVCSPGSQSGAAKDG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 TANLQPQTLDTNGFLTGVTTELNDTVYMKAATPFSCSSSILSGKASSEKEMTLISQRNNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TANLQPQTLDTNGFLTGVTTELNDTVYMKAATPFSCSSSILSGKASSEKEMTLISQRNNM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 LQTMDYEKSVSSLSATSELVTASVNLTTKFETRDNVDFWGNHLTQSHPEVLGTTIKSPDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LQTMDYEKSVSSLSATSELVTASVNLTTKFETRDNVDFWGNHLTQSHPEVLGTTIKSPDK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 VNCVAKPNAYNSGDMHNYCINYGNCELPVESSNQGSLPFHNYSKVNNSNKRRRFSGTAVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VNCVAKPNAYNSGDMHNYCINYGNCELPVESSNQGSLPFHNYSKVNNSNKRRRFSGTAVY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 ENPQRESSSSKTVVQQPISESFLSLVRQESSKPDSLLASISLLNDKDGTLKAKSEIEEQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ENPQRESSSSKTVVQQPISESFLSLVRQESSKPDSLLASISLLNDKDGTLKAKSEIEEQY
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 VLEKGQNIDGQNLYSNENQNLECATEKSKWEDFSNVDSPMMPRITSVFSLQSQQASEFLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VLEKGQNIDGQNLYSNENQNLECATEKSKWEDFSNVDSPMMPRITSVFSLQSQQASEFLP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 PEVNQLLQDVLKIKPDVKQDSSNTPNKGLPLHCDQSFQKHEREGKIVESSKDFKVQGIFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PEVNQLLQDVLKIKPDVKQDSSNTPNKGLPLHCDQSFQKHEREGKIVESSKDFKVQGIFP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 VPPGSVGINVPTNDLNLKFGKEKQVSSIPQDVRDSEKMPRISGFGTLLKTQSDAIITQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VPPGSVGINVPTNDLNLKFGKEKQVSSIPQDVRDSEKMPRISGFGTLLKTQSDAIITQQL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 VKDKLRATTQNLGSFYMQSPLLNSEQKKTIIVQTSKGFLIPLNITNKPGLPVIPGNALPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VKDKLRATTQNLGSFYMQSPLLNSEQKKTIIVQTSKGFLIPLNITNKPGLPVIPGNALPL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 VNSQGIPASLFVNKKPGMVLTLNNGKLEGVSAVKTEGAPARGTVTKEPCKTPILKVEPNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VNSQGIPASLFVNKKPGMVLTLNNGKLEGVSAVKTEGAPARGTVTKEPCKTPILKVEPNN
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 NCLTPGLCSSIGSCLSMKSSSENTLPLKGPYILKPTSSVKAVLIPNMLSEQQSTKLNISD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NCLTPGLCSSIGSCLSMKSSSENTLPLKGPYILKPTSSVKAVLIPNMLSEQQSTKLNISD
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 SVKQQNEIFPKPPLYTFLPDGKQAVFLKCVMPNKTELLKPKLVQNSTYQNIQPKKPEGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SVKQQNEIFPKPPLYTFLPDGKQAVFLKCVMPNKTELLKPKLVQNSTYQNIQPKKPEGTP
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 QRILLKIFNPVLNVTAANNLSVSNSASSLQKDNVPSNQIIGGEQKEPESRDALPFLLDDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QRILLKIFNPVLNVTAANNLSVSNSASSLQKDNVPSNQIIGGEQKEPESRDALPFLLDDL
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 MPANEIVITSTATCPESSEEPICVSDCSESRVLRCKTNCRIERNFNRKKTSKKIFSKTKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MPANEIVITSTATCPESSEEPICVSDCSESRVLRCKTNCRIERNFNRKKTSKKIFSKTKT
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 HGSKDSETAFVSRNRNCKRKCRDSYQEPPRRKATLHRKCKEKAKPEDVRETFGFSRPRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HGSKDSETAFVSRNRNCKRKCRDSYQEPPRRKATLHRKCKEKAKPEDVRETFGFSRPRLS
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 KDSIRTLRLFPFSSKQLVKCPRRNQPVVVLNHPDADAPEVVSVMKTIAKFNGHVLKVSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KDSIRTLRLFPFSSKQLVKCPRRNQPVVVLNHPDADAPEVVSVMKTIAKFNGHVLKVSLS
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 KRTINALLKPVCYNPPKTTYDDFSKRHKTFKPVSSVKERFVLKLTLKKTSKNNYQIVKTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KRTINALLKPVCYNPPKTTYDDFSKRHKTFKPVSSVKERFVLKLTLKKTSKNNYQIVKTT
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480
pF1KA0 SENILKAKFNCWFCGRVFDNQDTWAGHGQRHLMEATRDWNMLE
:::::::::::::::::::::::::::::::::::::::::::
CCDS73 SENILKAKFNCWFCGRVFDNQDTWAGHGQRHLMEATRDWNMLE
1450 1460 1470 1480
1483 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:39:01 2016 done: Thu Nov 3 19:39:02 2016
Total Scan time: 4.170 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]