Result of FASTA (omim) for
pF1KA0354
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0354, 677 aa
1>>>pF1KA0354 677 - 677 aa - 677 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.3098+/-0.000532; mu= -1.8820+/- 0.033
mean_var=706.7032+/-193.234, 0's: 0 Z-trim(118.2): 104 B-trim: 3623 in 2/56
Lambda= 0.048245
statistics sampled from 30695 (30863) to 30695 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.362), width: 16
Scan time: 11.840
The best scores are: opt bits E(85289)
NP_055687 (OMIM: 616590) zinc finger and BTB domai ( 677) 4499 329.7 2.2e-89
XP_005251691 (OMIM: 616590) PREDICTED: zinc finger ( 677) 4499 329.7 2.2e-89
NP_001265125 (OMIM: 608433,612337) zinc finger and ( 522) 387 43.3 0.0028
XP_016855549 (OMIM: 608433,612337) PREDICTED: zinc ( 522) 387 43.3 0.0028
NP_006343 (OMIM: 608433,612337) zinc finger and BT ( 522) 387 43.3 0.0028
XP_005273063 (OMIM: 608433,612337) PREDICTED: zinc ( 522) 387 43.3 0.0028
NP_991331 (OMIM: 608433,612337) zinc finger and BT ( 531) 387 43.3 0.0028
>>NP_055687 (OMIM: 616590) zinc finger and BTB domain-co (677 aa)
initn: 4499 init1: 4499 opt: 4499 Z-score: 1725.7 bits: 329.7 E(85289): 2.2e-89
Smith-Waterman score: 4499; 100.0% identity (100.0% similar) in 677 aa overlap (1-677:1-677)
10 20 30 40 50 60
pF1KA0 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 TRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGEEQPAPMSSSMRSNLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGEEQPAPMSSSMRSNLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 QRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDVTPENGPSGVHSREEFFSPDSLKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDVTPENGPSGVHSREEFFSPDSLKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 VDNPKADGMTDNQEDSAIMFDQSFGTQEDAQVPSQSDNSAGNMAQLSMASRATQVETSFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VDNPKADGMTDNQEDSAIMFDQSFGTQEDAQVPSQSDNSAGNMAQLSMASRATQVETSFD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 QEAAPEKSSFQCENPEVGLGEKEHMRVVVKSEPLSSPEPQDEVSDVTSQAEGSESVEVEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QEAAPEKSSFQCENPEVGLGEKEHMRVVVKSEPLSSPEPQDEVSDVTSQAEGSESVEVEG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 VVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTNNLEHKSTFSISNFLNKSRGNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTNNLEHKSTFSISNFLNKSRGNN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 FTANQNNDDNIPNTTSDCRLESEAPYLLSPEAGPAGGPSSAPGSHVENPFSEPADSHFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FTANQNNDDNIPNTTSDCRLESEAPYLLSPEAGPAGGPSSAPGSHVENPFSEPADSHFVR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 PMQEVMGLPCVQTSGYQGGEQFGMDFSRSGLGLHSSFSRVMIGSPRGGASNFPYYRRIAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PMQEVMGLPCVQTSGYQGGEQFGMDFSRSGLGLHSSFSRVMIGSPRGGASNFPYYRRIAP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 KMPVVTSVRSSQIPENSTSSQLMMNGATSSFENGHPSQPGPPQLTRASADVLSKCKKALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KMPVVTSVRSSQIPENSTSSQLMMNGATSSFENGHPSQPGPPQLTRASADVLSKCKKALS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 EHNVLVVEGARKYACKICCKTFLTLTDCKKHIRVHTGEKPYACLKCGKRFSQSSHLYKHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EHNVLVVEGARKYACKICCKTFLTLTDCKKHIRVHTGEKPYACLKCGKRFSQSSHLYKHS
610 620 630 640 650 660
670
pF1KA0 KTTCLRWQSSNLPSTLL
:::::::::::::::::
NP_055 KTTCLRWQSSNLPSTLL
670
>>XP_005251691 (OMIM: 616590) PREDICTED: zinc finger and (677 aa)
initn: 4499 init1: 4499 opt: 4499 Z-score: 1725.7 bits: 329.7 E(85289): 2.2e-89
Smith-Waterman score: 4499; 100.0% identity (100.0% similar) in 677 aa overlap (1-677:1-677)
10 20 30 40 50 60
pF1KA0 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 TRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGEEQPAPMSSSMRSNLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGEEQPAPMSSSMRSNLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 QRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDVTPENGPSGVHSREEFFSPDSLKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDVTPENGPSGVHSREEFFSPDSLKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 VDNPKADGMTDNQEDSAIMFDQSFGTQEDAQVPSQSDNSAGNMAQLSMASRATQVETSFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDNPKADGMTDNQEDSAIMFDQSFGTQEDAQVPSQSDNSAGNMAQLSMASRATQVETSFD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 QEAAPEKSSFQCENPEVGLGEKEHMRVVVKSEPLSSPEPQDEVSDVTSQAEGSESVEVEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QEAAPEKSSFQCENPEVGLGEKEHMRVVVKSEPLSSPEPQDEVSDVTSQAEGSESVEVEG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 VVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTNNLEHKSTFSISNFLNKSRGNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTNNLEHKSTFSISNFLNKSRGNN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 FTANQNNDDNIPNTTSDCRLESEAPYLLSPEAGPAGGPSSAPGSHVENPFSEPADSHFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FTANQNNDDNIPNTTSDCRLESEAPYLLSPEAGPAGGPSSAPGSHVENPFSEPADSHFVR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 PMQEVMGLPCVQTSGYQGGEQFGMDFSRSGLGLHSSFSRVMIGSPRGGASNFPYYRRIAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PMQEVMGLPCVQTSGYQGGEQFGMDFSRSGLGLHSSFSRVMIGSPRGGASNFPYYRRIAP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 KMPVVTSVRSSQIPENSTSSQLMMNGATSSFENGHPSQPGPPQLTRASADVLSKCKKALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KMPVVTSVRSSQIPENSTSSQLMMNGATSSFENGHPSQPGPPQLTRASADVLSKCKKALS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 EHNVLVVEGARKYACKICCKTFLTLTDCKKHIRVHTGEKPYACLKCGKRFSQSSHLYKHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EHNVLVVEGARKYACKICCKTFLTLTDCKKHIRVHTGEKPYACLKCGKRFSQSSHLYKHS
610 620 630 640 650 660
670
pF1KA0 KTTCLRWQSSNLPSTLL
:::::::::::::::::
XP_005 KTTCLRWQSSNLPSTLL
670
>>NP_001265125 (OMIM: 608433,612337) zinc finger and BTB (522 aa)
initn: 665 init1: 190 opt: 387 Z-score: 179.9 bits: 43.3 E(85289): 0.0028
Smith-Waterman score: 407; 26.6% identity (60.5% similar) in 372 aa overlap (1-360:1-349)
10 20 30 40 50 60
pF1KA0 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ
:.:: : ....: :. :: .: ::::...::. .:.:::.:::.:: .:. :: . :.
NP_001 MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFH-LFYKDQLDK
10 20 30 40 50
70 80 90 100 110 120
pF1KA0 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT
....:.:..::: ::: :...:: . :.. . . ::: :::.::. ..::.::. :
NP_001 R-DIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKLK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA0 TRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGEEQPAPMSSSMRSNLD
.. . ... .. :. :. ..: ..: . ..... :. :
NP_001 EKATTEADSTKKEEDASS---------------CSDKVESLSDGSSH---IAGDLPSDED
120 130 140 150 160
190 200 210 220 230
pF1KA0 QRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDVTPENGPSGVHSREEFFSP-DSLK
. . : .... : : . . .: : ..: .. : : .. . . :: .: .
NP_001 EGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKTVASPCSSTE
170 180 190 200 210 220
240 250 260 270 280 290
pF1KA0 IVDNPKADGMTDNQEDSAIMFDQSF-----GTQE-DAQVPSQSDNSAGNMAQLSMASRAT
... .. .. :. : ..: : :... ... :..: .:..:... ..:.
NP_001 SLSQRSVTSVRDSA-DVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEKEAS
230 240 250 260 270
300 310 320 330 340
pF1KA0 QVETS-----FDQEAAPEKSSFQCENPEVGLGEKEHMRVVVKSEPLSSPEPQDEVSDVTS
:.. .:.: . : : . .: .: : :. . .. : . .:..::
NP_001 CDESDVGTNDYDMEHSTVKESVSTNN-RVQY-EPAHLAPLREDSVLRELDREDKASDDEM
280 290 300 310 320 330
350 360 370 380 390 400
pF1KA0 QAEGSESVEVEGVVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTNNLEHKSTFS
.. :: :.:::
NP_001 MTPESERVQVEGGMESSLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTHFREQD
340 350 360 370 380 390
>>XP_016855549 (OMIM: 608433,612337) PREDICTED: zinc fin (522 aa)
initn: 665 init1: 190 opt: 387 Z-score: 179.9 bits: 43.3 E(85289): 0.0028
Smith-Waterman score: 407; 26.6% identity (60.5% similar) in 372 aa overlap (1-360:1-349)
10 20 30 40 50 60
pF1KA0 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ
:.:: : ....: :. :: .: ::::...::. .:.:::.:::.:: .:. :: . :.
XP_016 MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFH-LFYKDQLDK
10 20 30 40 50
70 80 90 100 110 120
pF1KA0 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT
....:.:..::: ::: :...:: . :.. . . ::: :::.::. ..::.::. :
XP_016 R-DIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKLK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA0 TRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGEEQPAPMSSSMRSNLD
.. . ... .. :. :. ..: ..: . ..... :. :
XP_016 EKATTEADSTKKEEDASS---------------CSDKVESLSDGSSH---IAGDLPSDED
120 130 140 150 160
190 200 210 220 230
pF1KA0 QRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDVTPENGPSGVHSREEFFSP-DSLK
. . : .... : : . . .: : ..: .. : : .. . . :: .: .
XP_016 EGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKTVASPCSSTE
170 180 190 200 210 220
240 250 260 270 280 290
pF1KA0 IVDNPKADGMTDNQEDSAIMFDQSF-----GTQE-DAQVPSQSDNSAGNMAQLSMASRAT
... .. .. :. : ..: : :... ... :..: .:..:... ..:.
XP_016 SLSQRSVTSVRDSA-DVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEKEAS
230 240 250 260 270
300 310 320 330 340
pF1KA0 QVETS-----FDQEAAPEKSSFQCENPEVGLGEKEHMRVVVKSEPLSSPEPQDEVSDVTS
:.. .:.: . : : . .: .: : :. . .. : . .:..::
XP_016 CDESDVGTNDYDMEHSTVKESVSTNN-RVQY-EPAHLAPLREDSVLRELDREDKASDDEM
280 290 300 310 320 330
350 360 370 380 390 400
pF1KA0 QAEGSESVEVEGVVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTNNLEHKSTFS
.. :: :.:::
XP_016 MTPESERVQVEGGMESSLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTHFREQD
340 350 360 370 380 390
>>NP_006343 (OMIM: 608433,612337) zinc finger and BTB do (522 aa)
initn: 665 init1: 190 opt: 387 Z-score: 179.9 bits: 43.3 E(85289): 0.0028
Smith-Waterman score: 407; 26.6% identity (60.5% similar) in 372 aa overlap (1-360:1-349)
10 20 30 40 50 60
pF1KA0 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ
:.:: : ....: :. :: .: ::::...::. .:.:::.:::.:: .:. :: . :.
NP_006 MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFH-LFYKDQLDK
10 20 30 40 50
70 80 90 100 110 120
pF1KA0 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT
....:.:..::: ::: :...:: . :.. . . ::: :::.::. ..::.::. :
NP_006 R-DIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKLK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA0 TRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGEEQPAPMSSSMRSNLD
.. . ... .. :. :. ..: ..: . ..... :. :
NP_006 EKATTEADSTKKEEDASS---------------CSDKVESLSDGSSH---IAGDLPSDED
120 130 140 150 160
190 200 210 220 230
pF1KA0 QRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDVTPENGPSGVHSREEFFSP-DSLK
. . : .... : : . . .: : ..: .. : : .. . . :: .: .
NP_006 EGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKTVASPCSSTE
170 180 190 200 210 220
240 250 260 270 280 290
pF1KA0 IVDNPKADGMTDNQEDSAIMFDQSF-----GTQE-DAQVPSQSDNSAGNMAQLSMASRAT
... .. .. :. : ..: : :... ... :..: .:..:... ..:.
NP_006 SLSQRSVTSVRDSA-DVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEKEAS
230 240 250 260 270
300 310 320 330 340
pF1KA0 QVETS-----FDQEAAPEKSSFQCENPEVGLGEKEHMRVVVKSEPLSSPEPQDEVSDVTS
:.. .:.: . : : . .: .: : :. . .. : . .:..::
NP_006 CDESDVGTNDYDMEHSTVKESVSTNN-RVQY-EPAHLAPLREDSVLRELDREDKASDDEM
280 290 300 310 320 330
350 360 370 380 390 400
pF1KA0 QAEGSESVEVEGVVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTNNLEHKSTFS
.. :: :.:::
NP_006 MTPESERVQVEGGMESSLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTHFREQD
340 350 360 370 380 390
>>XP_005273063 (OMIM: 608433,612337) PREDICTED: zinc fin (522 aa)
initn: 665 init1: 190 opt: 387 Z-score: 179.9 bits: 43.3 E(85289): 0.0028
Smith-Waterman score: 407; 26.6% identity (60.5% similar) in 372 aa overlap (1-360:1-349)
10 20 30 40 50 60
pF1KA0 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ
:.:: : ....: :. :: .: ::::...::. .:.:::.:::.:: .:. :: . :.
XP_005 MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFH-LFYKDQLDK
10 20 30 40 50
70 80 90 100 110 120
pF1KA0 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT
....:.:..::: ::: :...:: . :.. . . ::: :::.::. ..::.::. :
XP_005 R-DIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKLK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA0 TRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGEEQPAPMSSSMRSNLD
.. . ... .. :. :. ..: ..: . ..... :. :
XP_005 EKATTEADSTKKEEDASS---------------CSDKVESLSDGSSH---IAGDLPSDED
120 130 140 150 160
190 200 210 220 230
pF1KA0 QRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDVTPENGPSGVHSREEFFSP-DSLK
. . : .... : : . . .: : ..: .. : : .. . . :: .: .
XP_005 EGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKTVASPCSSTE
170 180 190 200 210 220
240 250 260 270 280 290
pF1KA0 IVDNPKADGMTDNQEDSAIMFDQSF-----GTQE-DAQVPSQSDNSAGNMAQLSMASRAT
... .. .. :. : ..: : :... ... :..: .:..:... ..:.
XP_005 SLSQRSVTSVRDSA-DVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEKEAS
230 240 250 260 270
300 310 320 330 340
pF1KA0 QVETS-----FDQEAAPEKSSFQCENPEVGLGEKEHMRVVVKSEPLSSPEPQDEVSDVTS
:.. .:.: . : : . .: .: : :. . .. : . .:..::
XP_005 CDESDVGTNDYDMEHSTVKESVSTNN-RVQY-EPAHLAPLREDSVLRELDREDKASDDEM
280 290 300 310 320 330
350 360 370 380 390 400
pF1KA0 QAEGSESVEVEGVVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTNNLEHKSTFS
.. :: :.:::
XP_005 MTPESERVQVEGGMESSLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTHFREQD
340 350 360 370 380 390
>>NP_991331 (OMIM: 608433,612337) zinc finger and BTB do (531 aa)
initn: 665 init1: 190 opt: 387 Z-score: 179.9 bits: 43.3 E(85289): 0.0028
Smith-Waterman score: 407; 26.6% identity (60.5% similar) in 372 aa overlap (1-360:10-358)
10 20 30 40 50
pF1KA0 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRA
:.:: : ....: :. :: .: ::::...::. .:.:::.:::.:: .:.
NP_991 MCPKGYEDSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFH-
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 LFSVAEGDQTMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSV
:: . :. ....:.:..::: ::: :...:: . :.. . . ::: :::.::. ..
NP_991 LFYKDQLDKR-DIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KA0 VKACKHYLTTRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGEEQPAPM
::.::. : .. . ... .. :. :. ..: ..: . .
NP_991 VKVCKKKLKEKATTEADSTKKEEDASS---------------CSDKVESLSDGSSH---I
120 130 140 150 160
180 190 200 210 220 230
pF1KA0 SSSMRSNLDQRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDVTPENGPSGVHSREE
.... :. :. . : .... : : . . .: : ..: .. : : .. . .
NP_991 AGDLPSDEDEGEDEKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGKT
170 180 190 200 210 220
240 250 260 270 280
pF1KA0 FFSP-DSLKIVDNPKADGMTDNQEDSAIMFDQSF-----GTQE-DAQVPSQSDNSAGNMA
:: .: . ... .. .. :. : ..: : :... ... :..: .:..
NP_991 VASPCSSTESLSQRSVTSVRDSA-DVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLV
230 240 250 260 270
290 300 310 320 330
pF1KA0 QLSMASRATQVETS-----FDQEAAPEKSSFQCENPEVGLGEKEHMRVVVKSEPLSSPEP
:... ..:. :.. .:.: . : : . .: .: : :. . .. : .
NP_991 QVKVEKEASCDESDVGTNDYDMEHSTVKESVSTNN-RVQY-EPAHLAPLREDSVLRELDR
280 290 300 310 320 330
340 350 360 370 380 390
pF1KA0 QDEVSDVTSQAEGSESVEVEGVVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTN
.:..:: .. :: :.:::
NP_991 EDKASDDEMMTPESERVQVEGGMESSLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIH
340 350 360 370 380 390
677 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:41:41 2016 done: Wed Nov 2 18:41:43 2016
Total Scan time: 11.840 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]