(Circular) (Six-base) MAPSORT of: pF1KA0356.seq Check: 8215 from: 1 to: 6281 pF1KA0356 6281 bp With 182 enzymes: SgfI * June 20, 2008 10:19 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 1179 1179 Size: 6281 AccI GT'mk_AC Cuts at: 3071 3319 3071 Size: 248 6033 Acc65I G'GTAC_C Cuts at: 3297 3297 Size: 6281 AclI AA'CG_TT Cuts at: 6121 6121 Size: 6281 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 532 770 815 1405 1469 2392 2788 2902 2947 Size: 238 45 590 64 923 396 114 45 Cuts at: 2947 4106 4538 5285 5553 532 Size: 1159 432 747 268 1260 Fragments arranged by size: 1260 1159 923 747 590 432 396 268 238 114 64 45 45 AflIII A'CryG_T Cuts at: 206 2822 3633 4737 5714 206 Size: 2616 811 1104 977 773 Fragments arranged by size: 2616 1104 977 811 773 AgeI A'CCGG_T Cuts at: 1016 4669 1016 Size: 3653 2628 AhdI GACnn_n'nnGTC Cuts at: 2130 2130 Size: 6281 AleI CACnn'nnGTG Cuts at: 448 1823 1825 448 Size: 1375 2 4904 Fragments arranged by size: 4904 1375 2 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1171 1171 Size: 6281 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 577 609 577 Size: 32 6249 AlwNI CAG_nnn'CTG Cuts at: 793 846 1201 2198 2550 2766 3586 5153 793 Size: 53 355 997 352 216 820 1567 1921 Fragments arranged by size: 1921 1567 997 820 355 352 216 53 ApaI G_GGCC'C Cuts at: 2335 2793 2335 Size: 458 5823 ApaLI G'TGCA_C Cuts at: 3087 5051 3087 Size: 1964 4317 ApoI r'AATT_y Cuts at: 1042 2512 3052 3285 5634 5890 1042 Size: 1470 540 233 2349 256 1433 Fragments arranged by size: 2349 1470 1433 540 256 233 AseI AT'TA_AT Cuts at: 20 20 Size: 6281 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6281 AvaI C'yCGr_G Cuts at: 816 1460 2050 2522 3301 816 Size: 644 590 472 779 3796 Fragments arranged by size: 3796 779 644 590 472 BamHI G'GATC_C Cuts at: 178 3306 178 Size: 3128 3153 BanI G'GyrC_C Cuts at: 1167 1245 1723 2055 2920 3297 3711 3959 3994 Size: 78 478 332 865 377 414 248 35 Cuts at: 3994 1167 Size: 3454 Fragments arranged by size: 3454 865 478 414 377 332 248 78 35 BanII G_rGCy'C Cuts at: 968 1181 1766 1778 2099 2335 2793 2936 3295 Size: 213 585 12 321 236 458 143 359 Cuts at: 3295 4325 968 Size: 1030 2924 Fragments arranged by size: 2924 1030 585 458 359 321 236 213 143 12 BbeI G_GCGC'C Cuts at: 1249 2059 2924 3715 3963 1249 Size: 810 865 791 248 3567 Fragments arranged by size: 3567 865 810 791 248 BbsI GAAGACnn'nnnn_ Cuts at: 242 363 803 1890 3180 242 Size: 121 440 1087 1290 3343 Fragments arranged by size: 3343 1290 1087 440 121 BbvCI CC'TCA_GC Cuts at: 314 581 862 1004 1946 1994 314 Size: 267 281 142 942 48 4601 Fragments arranged by size: 4601 942 281 267 142 48 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 90 124 90 Size: 34 6247 BciVI GTATCCnnnnn_n' Cuts at: 4179 4940 6281 4179 Size: 761 1341 4179 Fragments arranged by size: 4179 1341 761 BclI T'GATC_A Cuts at: 3801 3801 Size: 6281 BglI GCCn_nnn'nGGC Cuts at: 271 2330 2461 2918 271 Size: 2059 131 457 3634 Fragments arranged by size: 3634 2059 457 131 BglII A'GATC_T Cuts at: 3113 3796 5833 3113 Size: 683 2037 3561 Fragments arranged by size: 3561 2037 683 BlpI GC'TnA_GC Cuts at: 2935 3393 2935 Size: 458 5823 Bme1580I G_kGCm'C Cuts at: 345 994 1726 2116 2335 2793 3091 3240 3906 Size: 649 732 390 219 458 298 149 666 Cuts at: 3906 3999 5055 345 Size: 93 1056 1571 Fragments arranged by size: 1571 1056 732 666 649 458 390 298 219 149 93 BmgBI CAC'GTC Cuts at: 623 623 Size: 6281 BmrI ACTGGGnnnn_n' Cuts at: 2739 3493 3574 3909 6053 2739 Size: 754 81 335 2144 2967 Fragments arranged by size: 2967 2144 754 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 954 1302 1854 4648 954 Size: 348 552 2794 2587 Fragments arranged by size: 2794 2587 552 348 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 289 1495 1502 1807 2092 289 Size: 1206 7 305 285 4478 Fragments arranged by size: 4478 1206 305 285 7 Bpu10I CC'TnA_GC Cuts at: 314 581 601 862 1004 1804 1946 1994 314 Size: 267 20 261 142 800 142 48 4601 Fragments arranged by size: 4601 800 267 261 142 142 48 20 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 1193 1538 3022 3457 4336 4828 5126 1193 Size: 345 1484 435 879 492 298 2348 Fragments arranged by size: 2348 1484 879 492 435 345 298 BsaI GGTCTCn'nnnn_ Cuts at: 1025 1540 1714 2287 5985 1025 Size: 515 174 573 3698 1321 Fragments arranged by size: 3698 1321 573 515 174 BsaAI yAC'GTr Cuts at: 207 1224 3634 207 Size: 1017 2410 2854 Fragments arranged by size: 2854 2410 1017 BsaBI GATnn'nnATC Cuts at: 6 3795 5832 6 Size: 3789 2037 455 Fragments arranged by size: 3789 2037 455 BsaHI Gr'CG_yC Cuts at: 1246 2056 2921 3712 3960 4662 6158 1246 Size: 810 865 791 248 702 1496 1369 Fragments arranged by size: 1496 1369 865 810 791 702 248 BsaWI w'CCGG_w Cuts at: 1016 1673 3470 3991 4669 4943 5090 5501 1016 Size: 657 1797 521 678 274 147 411 1796 Fragments arranged by size: 1797 1796 678 657 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 577 607 955 985 1993 2023 577 Size: 30 348 30 1008 30 4835 Fragments arranged by size: 4835 1008 348 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 598 846 976 1828 1920 2473 2880 598 Size: 248 130 852 92 553 407 3999 Fragments arranged by size: 3999 852 553 407 248 130 92 BseYI C'CCAG_C Cuts at: 362 887 1249 1719 2792 3062 3092 3706 4464 Size: 525 362 470 1073 270 30 614 758 Cuts at: 4464 5041 5537 362 Size: 577 496 1106 Fragments arranged by size: 1106 1073 758 614 577 525 496 470 362 270 30 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 277 279 761 1141 1246 2041 277 Size: 2 482 380 105 795 4517 Fragments arranged by size: 4517 795 482 380 105 2 BsiEI CG_ry'CG Cuts at: 104 3823 3869 5077 104 Size: 3719 46 1208 1308 Fragments arranged by size: 3719 1308 1208 46 BsiHKAI G_wGCw'C Cuts at: 428 1285 1766 1778 1820 2936 3091 3295 4073 Size: 857 481 12 42 1116 155 204 778 Cuts at: 4073 4263 5055 428 Size: 190 792 1654 Fragments arranged by size: 1654 1116 857 792 778 481 204 190 155 42 12 BsmBI CGTCTCn'nnnn_ Cuts at: 2831 2862 2831 Size: 31 6250 Bsp1286I G_dGCh'C Cuts at: 345 428 968 994 1181 1285 1726 1766 1778 Size: 83 540 26 187 104 441 40 12 Cuts at: 1778 1820 2099 2116 2335 2793 2936 3091 3240 Size: 42 279 17 219 458 143 155 149 Cuts at: 3240 3295 3906 3999 4073 4263 4325 5055 345 Size: 55 611 93 74 190 62 730 1571 Fragments arranged by size: 1571 730 611 540 458 441 279 219 190 187 155 149 143 104 93 83 74 62 55 42 40 26 17 12 BspEI T'CCGG_A Cuts at: 5501 5501 Size: 6281 BspHI T'CATG_A Cuts at: 1368 1712 5457 1368 Size: 344 3745 2192 Fragments arranged by size: 3745 2192 344 BspMI ACCTGCnnnn'nnnn_ Cuts at: 1163 1179 2093 2816 3331 3545 3847 4228 1163 Size: 16 914 723 515 214 302 381 3216 Fragments arranged by size: 3216 914 723 515 381 302 214 16 BsrBI CCG'CTC Cuts at: 50 1734 2847 4573 4627 6111 6276 50 Size: 1684 1113 1726 54 1484 165 55 Fragments arranged by size: 1726 1684 1484 1113 165 55 54 BsrDI GCAATG_nn' Cuts at: 954 1751 4193 954 Size: 797 2442 3042 Fragments arranged by size: 3042 2442 797 BsrFI r'CCGG_y Cuts at: 1016 1451 3242 4279 4460 4669 1016 Size: 435 1791 1037 181 209 2628 Fragments arranged by size: 2628 1791 1037 435 209 181 BsrGI T'GTAC_A Cuts at: 2183 2183 Size: 6281 BssHII G'CGCG_C Cuts at: 1923 1923 Size: 6281 BssSI C'ACGA_G Cuts at: 4552 4910 4552 Size: 358 5923 BstAPI GCAn_nnn'nTGC Cuts at: 3658 3658 Size: 6281 BstBI TT'CG_AA Cuts at: 635 4642 635 Size: 4007 2274 BstEII G'GTnAC_C Cuts at: 2466 2466 Size: 6281 BstXI CCAn_nnnn'nTGG Cuts at: 934 1257 1332 1345 1879 934 Size: 323 75 13 534 5336 Fragments arranged by size: 5336 534 323 75 13 BstYI r'GATC_y Cuts at: 1 178 1100 1430 2415 2783 3113 3306 3773 Size: 177 922 330 985 368 330 193 467 Cuts at: 3773 3796 4131 4377 5389 5475 5487 5833 1 Size: 23 335 246 1012 86 12 346 449 Fragments arranged by size: 1012 985 922 467 449 368 346 335 330 330 246 193 177 86 23 12 Bsu36I CC'TnA_GG Cuts at: 1287 2039 1287 Size: 752 5529 BtgI C'CryG_G Cuts at: 285 1131 1727 2099 2283 2564 285 Size: 846 596 372 184 281 4002 Fragments arranged by size: 4002 846 596 372 281 184 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4231 4412 4575 4231 Size: 181 163 5937 Fragments arranged by size: 5937 181 163 BtsI GCAGTG_nn' Cuts at: 3075 3524 3075 Size: 449 5832 DraI TTT'AAA Cuts at: 3280 3280 Size: 6281 DraIII CAC_nnn'GTG Cuts at: 257 2289 257 Size: 2032 4249 DrdI GACnn_nn'nnGTC Cuts at: 223 805 1521 3160 3987 4845 223 Size: 582 716 1639 827 858 1659 Fragments arranged by size: 1659 1639 858 827 716 582 EaeI y'GGCC_r Cuts at: 875 2357 2711 3866 4040 4431 4458 5803 875 Size: 1482 354 1155 174 391 27 1345 1353 Fragments arranged by size: 1482 1353 1345 1155 391 354 174 27 EagI C'GGCC_G Cuts at: 3866 3866 Size: 6281 EarI CTCTTCn'nnn_ Cuts at: 1771 4304 4514 1771 Size: 2533 210 3538 Fragments arranged by size: 3538 2533 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1783 2124 4489 4799 4945 6091 1783 Size: 341 2365 310 146 1146 1973 Fragments arranged by size: 2365 1973 1146 341 310 146 EcoICRI GAG'CTC Cuts at: 1764 1776 2934 3293 1764 Size: 12 1158 359 4752 Fragments arranged by size: 4752 1158 359 12 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 289 532 770 815 1405 1469 1495 1502 1807 Size: 243 238 45 590 64 26 7 305 Cuts at: 1807 2092 2392 2788 2902 2947 4106 4538 5285 Size: 285 300 396 114 45 1159 432 747 Cuts at: 5285 5553 289 Size: 268 1017 Fragments arranged by size: 1159 1017 747 590 432 396 305 300 285 268 243 238 114 64 45 45 26 7 EcoNI CCTnn'n_nnAGG Cuts at: 1354 1610 1981 1354 Size: 256 371 5654 Fragments arranged by size: 5654 371 256 EcoO109I rG'GnC_Cy Cuts at: 615 1974 2195 2331 2733 2763 3042 3420 615 Size: 1359 221 136 402 30 279 378 3476 Fragments arranged by size: 3476 1359 402 378 279 221 136 30 EcoRI G'AATT_C Cuts at: 1042 3285 1042 Size: 2243 4038 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 1782 3204 4300 1782 Size: 1422 1096 3763 Fragments arranged by size: 3763 1422 1096 FspI TGC'GCA Cuts at: 2601 4062 2601 Size: 1461 4820 HaeII r_GCGC'y Cuts at: 266 1249 1887 2059 2748 2924 3715 3963 4985 Size: 983 638 172 689 176 791 248 1022 Cuts at: 4985 5964 266 Size: 979 583 Fragments arranged by size: 1022 983 979 791 689 638 583 248 176 172 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 712 744 955 987 2074 2106 2116 2148 2630 Size: 32 211 32 1087 32 10 32 482 Cuts at: 2630 2662 2683 2715 4123 4153 4155 4185 712 Size: 32 21 32 1408 30 2 30 2808 Fragments arranged by size: 2808 1408 1087 482 211 32 32 32 32 32 32 30 30 21 10 2 HincII GTy'rAC Cuts at: 441 3320 441 Size: 2879 3402 KasI G'GCGC_C Cuts at: 1245 2055 2920 3711 3959 1245 Size: 810 865 791 248 3567 Fragments arranged by size: 3567 865 810 791 248 KpnI G_GTAC'C Cuts at: 3301 3301 Size: 6281 MluI A'CGCG_T Cuts at: 2822 5714 2822 Size: 2892 3389 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 401 1019 1718 3027 4952 5136 401 Size: 618 699 1309 1925 184 1546 Fragments arranged by size: 1925 1546 1309 699 618 184 MscI TGG'CCA Cuts at: 4042 4042 Size: 6281 MslI CAynn'nnrTG Cuts at: 448 1823 1825 1877 4270 4397 448 Size: 1375 2 52 2393 127 2332 Fragments arranged by size: 2393 2332 1375 127 52 2 MspA1I CmG'CkG Cuts at: 458 753 891 1785 2101 2880 3233 3392 3706 Size: 295 138 894 316 779 353 159 314 Cuts at: 3706 4066 5079 5324 458 Size: 360 1013 245 1415 Fragments arranged by size: 1415 1013 894 779 360 353 316 314 295 245 159 138 NaeI GCC'GGC Cuts at: 3244 4462 3244 Size: 1218 5063 NarI GG'CG_CC Cuts at: 1246 2056 2921 3712 3960 1246 Size: 810 865 791 248 3567 Fragments arranged by size: 3567 865 810 791 248 NcoI C'CATG_G Cuts at: 285 1131 2564 285 Size: 846 1433 4002 Fragments arranged by size: 4002 1433 846 NgoMIV G'CCGG_C Cuts at: 3242 4460 3242 Size: 1218 5063 NspI r_CATG'y Cuts at: 2842 3070 3334 3834 4741 2842 Size: 228 264 500 907 4382 Fragments arranged by size: 4382 907 500 264 228 PasI CC'CwG_GG Cuts at: 1578 1644 2061 2472 1578 Size: 66 417 411 5387 Fragments arranged by size: 5387 417 411 66 PciI A'CATG_T Cuts at: 4737 4737 Size: 6281 PflMI CCAn_nnn'nTGG Cuts at: 2289 3210 2289 Size: 921 5360 PfoI T'CCnGG_A Cuts at: 572 2300 572 Size: 1728 4553 PmeI GTTT'AAAC Cuts at: 3280 3280 Size: 6281 PmlI CAC'GTG Cuts at: 1224 1224 Size: 6281 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 577 609 5420 5452 577 Size: 32 4811 32 1406 Fragments arranged by size: 4811 1406 32 32 PpuMI rG'GwC_Cy Cuts at: 2195 2733 2195 Size: 538 5743 PshAI GACnn'nnGTC Cuts at: 436 436 Size: 6281 PspOMI G'GGCC_C Cuts at: 2331 2789 2331 Size: 458 5823 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 2008 2040 2008 Size: 32 6249 PstI C_TGCA'G Cuts at: 527 614 901 1176 1355 1982 2381 2546 2758 Size: 87 287 275 179 627 399 165 212 Cuts at: 2758 2813 3328 4013 527 Size: 55 515 685 2795 Fragments arranged by size: 2795 685 627 515 399 287 275 212 179 165 87 55 PvuI CG_AT'CG Cuts at: 104 104 Size: 6281 PvuII CAG'CTG Cuts at: 891 2880 3706 4066 891 Size: 1989 826 360 3106 Fragments arranged by size: 3106 1989 826 360 RsrII CG'GwC_CG Cuts at: 4476 4476 Size: 6281 SacI G_AGCT'C Cuts at: 1766 1778 2936 3295 1766 Size: 12 1158 359 4752 Fragments arranged by size: 4752 1158 359 12 SacII CC_GC'GG Cuts at: 2102 2102 Size: 6281 SalI G'TCGA_C Cuts at: 3318 3318 Size: 6281 SapI GCTCTTCn'nnn_ Cuts at: 1771 4304 4514 1771 Size: 2533 210 3538 Fragments arranged by size: 3538 2533 210 SbfI CC_TGCA'GG Cuts at: 614 3328 614 Size: 2714 3567 ScaI AGT'ACT Cuts at: 550 1308 5798 550 Size: 758 4490 1033 Fragments arranged by size: 4490 1033 758 SexAI A'CCwGG_T Cuts at: 2549 2549 Size: 6281 SfcI C'TryA_G Cuts at: 33 523 610 748 897 1172 1274 1351 1978 Size: 490 87 138 149 275 102 77 627 Cuts at: 1978 2377 2542 2754 2809 3324 4009 5002 5193 Size: 399 165 212 55 515 685 993 191 Cuts at: 5193 33 Size: 1121 Fragments arranged by size: 1121 993 685 627 515 490 399 275 212 191 165 149 138 102 87 77 55 SfoI GGC'GCC Cuts at: 1247 2057 2922 3713 3961 1247 Size: 810 865 791 248 3567 Fragments arranged by size: 3567 865 810 791 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6281 SgrAI Cr'CCGG_yG Cuts at: 3242 3242 Size: 6281 SmaI CCC'GGG Cuts at: 1462 2524 3303 1462 Size: 1062 779 4440 Fragments arranged by size: 4440 1062 779 SmlI C'TyrA_G Cuts at: 1208 1553 3037 3436 4351 4843 5105 1208 Size: 345 1484 399 915 492 262 2384 Fragments arranged by size: 2384 1484 915 492 399 345 262 SpeI A'CTAG_T Cuts at: 67 229 67 Size: 162 6119 SphI G_CATG'C Cuts at: 3334 3834 3334 Size: 500 5781 StuI AGG'CCT Cuts at: 190 1117 1530 2576 190 Size: 927 413 1046 3895 Fragments arranged by size: 3895 1046 927 413 StyI C'CwwG_G Cuts at: 285 1131 1338 2225 2325 2360 2564 2586 3415 Size: 846 207 887 100 35 204 22 829 Cuts at: 3415 3769 285 Size: 354 2797 Fragments arranged by size: 2797 887 846 829 354 207 204 100 35 22 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 412 1419 1508 2001 3106 3864 3997 4456 4665 Size: 1007 89 493 1105 758 133 459 209 Cuts at: 4665 412 Size: 2028 Fragments arranged by size: 2028 1105 1007 758 493 459 209 133 89 TatI w'GTAC_w Cuts at: 548 1306 2177 2183 5796 548 Size: 758 871 6 3613 1033 Fragments arranged by size: 3613 1033 871 758 6 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 324 356 1993 2025 5798 5830 324 Size: 32 1637 32 3773 32 775 Fragments arranged by size: 3773 1637 775 32 32 32 Tth111I GACn'n_nGTC Cuts at: 4078 4078 Size: 6281 XbaI T'CTAG_A Cuts at: 3312 3312 Size: 6281 XcmI CCAnnnn_n'nnnnTGG Cuts at: 114 1198 3776 114 Size: 1084 2578 2619 Fragments arranged by size: 2619 2578 1084 XmaI C'CCGG_G Cuts at: 1460 2522 3301 1460 Size: 1062 779 4440 Fragments arranged by size: 4440 1062 779 XmnI GAAnn'nnTTC Cuts at: 2242 2533 3268 2242 Size: 291 735 5255 Fragments arranged by size: 5255 735 291 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PspOMI PsrI PstI PvuI PvuII RsrII SacI SacII SalI SapI SbfI ScaI SexAI SfcI SfoI SgfI SgrAI SmaI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AatII AfeI AflII AscI AvrII BaeI BfrBI BmtI BsiWI BsmI BstZ17I ClaI CspCI EcoRV FseI FspAI HindIII HpaI MfeI NdeI NheI NotI NruI NsiI PacI PsiI PspXI SanDI SfiI SnaBI SrfI SspI SwaI XhoI ZraI