Result of FASTA (ccds) for
pF1KA0365
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0365, 1082 aa
1>>>pF1KA0365 1082 - 1082 aa - 1082 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4523+/-0.00104; mu= 10.0101+/- 0.063
mean_var=207.1597+/-40.942, 0's: 0 Z-trim(111.8): 17 B-trim: 9 in 1/52
Lambda= 0.089109
statistics sampled from 12627 (12641) to 12627 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.388), width: 16
Scan time: 4.700
The best scores are: opt bits E(32554)
CCDS12392.1 SUGP2 gene_id:10147|Hs108|chr19 (1082) 7273 948.5 0
CCDS82322.1 SUGP2 gene_id:10147|Hs108|chr19 (1096) 7273 948.5 0
>>CCDS12392.1 SUGP2 gene_id:10147|Hs108|chr19 (1082 aa)
initn: 7273 init1: 7273 opt: 7273 Z-score: 5062.5 bits: 948.5 E(32554): 0
Smith-Waterman score: 7273; 100.0% identity (100.0% similar) in 1082 aa overlap (1-1082:1-1082)
10 20 30 40 50 60
pF1KA0 MAARRITQETFDAVLQEKAKRYHMDASGEAVSETLQFKAQDLLRAVPRSRAEMYDDVHSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAARRITQETFDAVLQEKAKRYHMDASGEAVSETLQFKAQDLLRAVPRSRAEMYDDVHSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 GRYSLSGSVAHSRDAGREGLRSDVFPGPSFRSSNPSISDDSYFRKECGRDLEFSHSDSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GRYSLSGSVAHSRDAGREGLRSDVFPGPSFRSSNPSISDDSYFRKECGRDLEFSHSDSRD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 QVIGHRKLGHFRSQDWKFALRGSWEQDFGHPVSQESSWSQEYSFGPSAVLGDFGSSRLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QVIGHRKLGHFRSQDWKFALRGSWEQDFGHPVSQESSWSQEYSFGPSAVLGDFGSSRLIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 KECLEKESRDYDVDHPGEADSVLRGGSQVQARGRALNIVDQEGSLLGKGETQGLLTAKGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KECLEKESRDYDVDHPGEADSVLRGGSQVQARGRALNIVDQEGSLLGKGETQGLLTAKGG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 VGKLVTLRNVSTKKIPTVNRITPKTQGTNQIQKNTPSPDVTLGTNPGTEDIQFPIQKIPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VGKLVTLRNVSTKKIPTVNRITPKTQGTNQIQKNTPSPDVTLGTNPGTEDIQFPIQKIPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 GLDLKNLRLPRRKMSFDIIDKSDVFSRFGIEIIKWAGFHTIKDDIKFSQLFQTLFELETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GLDLKNLRLPRRKMSFDIIDKSDVFSRFGIEIIKWAGFHTIKDDIKFSQLFQTLFELETE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 TCAKMLASFKCSLKPEHRDFCFFTIKFLKHSALKTPRVDNEFLNMLLDKGAVKTKNCFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TCAKMLASFKCSLKPEHRDFCFFTIKFLKHSALKTPRVDNEFLNMLLDKGAVKTKNCFFE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 IIKPFDKYIMRLQDRLLKSVTPLLMACNAYELSVKMKTLSNPLDLALALETTNSLCRKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IIKPFDKYIMRLQDRLLKSVTPLLMACNAYELSVKMKTLSNPLDLALALETTNSLCRKSL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 ALLGQTFSLASSFRQEKILEAVGLQDIAPSPAAFPNFEDSTLFGREYIDHLKAWLVSSGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALLGQTFSLASSFRQEKILEAVGLQDIAPSPAAFPNFEDSTLFGREYIDHLKAWLVSSGC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 PLQVKKAEPEPMREEEKMIPPTKPEIQAKAPSSLSDAVPQRADHRVVGTIDQLVKRVIEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLQVKKAEPEPMREEEKMIPPTKPEIQAKAPSSLSDAVPQRADHRVVGTIDQLVKRVIEG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 SLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEMQRMSENLRGADQKPTSADCAVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEMQRMSENLRGADQKPTSADCAVRA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 MLYSRAVRNLKKKLLPWQRRGLLRAQGLRGWKARRATTGTQTLLSSGTRLKHHGRQAPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLYSRAVRNLKKKLLPWQRRGLLRAQGLRGWKARRATTGTQTLLSSGTRLKHHGRQAPGL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SQAKPSLPDRNDAAKDCPPDPVGPSPQDPSLEASGPSPKPAGVDISEAPQTSSPCPSADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SQAKPSLPDRNDAAKDCPPDPVGPSPQDPSLEASGPSPKPAGVDISEAPQTSSPCPSADI
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 DMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFELCPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFELCPS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 ICFTSSPHNLHTGGGDTTGSQESPVDLMEGEAEFEDEPPPREAELESPEVMPEEEDEDDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ICFTSSPHNLHTGGGDTTGSQESPVDLMEGEAEFEDEPPPREAELESPEVMPEEEDEDDE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 DGGEEAPAPGGAGKSEGSTPADGLPGEAAEDDLAGAPALSQASSGTCFPRKRISSKSLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DGGEEAPAPGGAGKSEGSTPADGLPGEAAEDDLAGAPALSQASSGTCFPRKRISSKSLKV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 GMIPAPKRVCLIQEPKVHEPVRIAYDRPRGRPMSKKKKPKDLDFAQQKLTDKNLGFQMLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GMIPAPKRVCLIQEPKVHEPVRIAYDRPRGRPMSKKKKPKDLDFAQQKLTDKNLGFQMLQ
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 KMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHKEDTFDVFRQRMMQMYRHKRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHKEDTFDVFRQRMMQMYRHKRA
1030 1040 1050 1060 1070 1080
pF1KA0 NK
::
CCDS12 NK
>>CCDS82322.1 SUGP2 gene_id:10147|Hs108|chr19 (1096 aa)
initn: 7273 init1: 7273 opt: 7273 Z-score: 5062.5 bits: 948.5 E(32554): 0
Smith-Waterman score: 7273; 100.0% identity (100.0% similar) in 1082 aa overlap (1-1082:15-1096)
10 20 30 40
pF1KA0 MAARRITQETFDAVLQEKAKRYHMDASGEAVSETLQFKAQDLLRAV
::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSPPRAAAAAGQNNMAARRITQETFDAVLQEKAKRYHMDASGEAVSETLQFKAQDLLRAV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KA0 PRSRAEMYDDVHSDGRYSLSGSVAHSRDAGREGLRSDVFPGPSFRSSNPSISDDSYFRKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PRSRAEMYDDVHSDGRYSLSGSVAHSRDAGREGLRSDVFPGPSFRSSNPSISDDSYFRKE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KA0 CGRDLEFSHSDSRDQVIGHRKLGHFRSQDWKFALRGSWEQDFGHPVSQESSWSQEYSFGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CGRDLEFSHSDSRDQVIGHRKLGHFRSQDWKFALRGSWEQDFGHPVSQESSWSQEYSFGP
130 140 150 160 170 180
170 180 190 200 210 220
pF1KA0 SAVLGDFGSSRLIEKECLEKESRDYDVDHPGEADSVLRGGSQVQARGRALNIVDQEGSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SAVLGDFGSSRLIEKECLEKESRDYDVDHPGEADSVLRGGSQVQARGRALNIVDQEGSLL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KA0 GKGETQGLLTAKGGVGKLVTLRNVSTKKIPTVNRITPKTQGTNQIQKNTPSPDVTLGTNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GKGETQGLLTAKGGVGKLVTLRNVSTKKIPTVNRITPKTQGTNQIQKNTPSPDVTLGTNP
250 260 270 280 290 300
290 300 310 320 330 340
pF1KA0 GTEDIQFPIQKIPLGLDLKNLRLPRRKMSFDIIDKSDVFSRFGIEIIKWAGFHTIKDDIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GTEDIQFPIQKIPLGLDLKNLRLPRRKMSFDIIDKSDVFSRFGIEIIKWAGFHTIKDDIK
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 FSQLFQTLFELETETCAKMLASFKCSLKPEHRDFCFFTIKFLKHSALKTPRVDNEFLNML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FSQLFQTLFELETETCAKMLASFKCSLKPEHRDFCFFTIKFLKHSALKTPRVDNEFLNML
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 LDKGAVKTKNCFFEIIKPFDKYIMRLQDRLLKSVTPLLMACNAYELSVKMKTLSNPLDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LDKGAVKTKNCFFEIIKPFDKYIMRLQDRLLKSVTPLLMACNAYELSVKMKTLSNPLDLA
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 LALETTNSLCRKSLALLGQTFSLASSFRQEKILEAVGLQDIAPSPAAFPNFEDSTLFGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LALETTNSLCRKSLALLGQTFSLASSFRQEKILEAVGLQDIAPSPAAFPNFEDSTLFGRE
490 500 510 520 530 540
530 540 550 560 570 580
pF1KA0 YIDHLKAWLVSSGCPLQVKKAEPEPMREEEKMIPPTKPEIQAKAPSSLSDAVPQRADHRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YIDHLKAWLVSSGCPLQVKKAEPEPMREEEKMIPPTKPEIQAKAPSSLSDAVPQRADHRV
550 560 570 580 590 600
590 600 610 620 630 640
pF1KA0 VGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEMQRMSENLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEMQRMSENLRG
610 620 630 640 650 660
650 660 670 680 690 700
pF1KA0 ADQKPTSADCAVRAMLYSRAVRNLKKKLLPWQRRGLLRAQGLRGWKARRATTGTQTLLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ADQKPTSADCAVRAMLYSRAVRNLKKKLLPWQRRGLLRAQGLRGWKARRATTGTQTLLSS
670 680 690 700 710 720
710 720 730 740 750 760
pF1KA0 GTRLKHHGRQAPGLSQAKPSLPDRNDAAKDCPPDPVGPSPQDPSLEASGPSPKPAGVDIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GTRLKHHGRQAPGLSQAKPSLPDRNDAAKDCPPDPVGPSPQDPSLEASGPSPKPAGVDIS
730 740 750 760 770 780
770 780 790 800 810 820
pF1KA0 EAPQTSSPCPSADIDMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EAPQTSSPCPSADIDMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSA
790 800 810 820 830 840
830 840 850 860 870 880
pF1KA0 FKFYRKKVFELCPSICFTSSPHNLHTGGGDTTGSQESPVDLMEGEAEFEDEPPPREAELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FKFYRKKVFELCPSICFTSSPHNLHTGGGDTTGSQESPVDLMEGEAEFEDEPPPREAELE
850 860 870 880 890 900
890 900 910 920 930 940
pF1KA0 SPEVMPEEEDEDDEDGGEEAPAPGGAGKSEGSTPADGLPGEAAEDDLAGAPALSQASSGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SPEVMPEEEDEDDEDGGEEAPAPGGAGKSEGSTPADGLPGEAAEDDLAGAPALSQASSGT
910 920 930 940 950 960
950 960 970 980 990 1000
pF1KA0 CFPRKRISSKSLKVGMIPAPKRVCLIQEPKVHEPVRIAYDRPRGRPMSKKKKPKDLDFAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CFPRKRISSKSLKVGMIPAPKRVCLIQEPKVHEPVRIAYDRPRGRPMSKKKKPKDLDFAQ
970 980 990 1000 1010 1020
1010 1020 1030 1040 1050 1060
pF1KA0 QKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHKEDTFDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHKEDTFDV
1030 1040 1050 1060 1070 1080
1070 1080
pF1KA0 FRQRMMQMYRHKRANK
::::::::::::::::
CCDS82 FRQRMMQMYRHKRANK
1090
1082 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:26:47 2016 done: Thu Nov 3 09:26:47 2016
Total Scan time: 4.700 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]