Result of FASTA (ccds) for
pF1KA0370
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0370, 1125 aa
1>>>pF1KA0370 1125 - 1125 aa - 1125 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6980+/-0.0011; mu= 19.5908+/- 0.066
mean_var=65.1699+/-12.579, 0's: 0 Z-trim(102.9): 25 B-trim: 0 in 0/49
Lambda= 0.158873
statistics sampled from 7151 (7154) to 7151 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.569), E-opt: 0.2 (0.22), width: 16
Scan time: 4.870
The best scores are: opt bits E(32554)
CCDS42135.1 XPO6 gene_id:23214|Hs108|chr16 (1125) 7350 1694.3 0
CCDS59266.1 XPO6 gene_id:23214|Hs108|chr16 (1111) 7273 1676.6 0
>>CCDS42135.1 XPO6 gene_id:23214|Hs108|chr16 (1125 aa)
initn: 7350 init1: 7350 opt: 7350 Z-score: 9092.6 bits: 1694.3 E(32554): 0
Smith-Waterman score: 7350; 100.0% identity (100.0% similar) in 1125 aa overlap (1-1125:1-1125)
10 20 30 40 50 60
pF1KA0 MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 MMYSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MMYSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 DWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 QTVLGLLTGILETVWDKHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQPIPILDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QTVLGLLTGILETVWDKHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQPIPILDV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVNGSSQNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVNGSSQNCV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 SGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKDNNAHTVKSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKDNNAHTVKSRL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 EELDESYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EELDESYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 WTLFLDYLTSKIKSRLGDKEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 WTLFLDYLTSKIKSRLGDKEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 DQQTEWQRYLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFIVTSGSGHRLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DQQTEWQRYLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFIVTSGSGHRLN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 ITAENDCRRLHCSLRDLSSLLQAVGRLAEYFIGDVFAARFNDALTVVERLVKVTLYGSQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ITAENDCRRLHCSLRDLSSLLQAVGRLAEYFIGDVFAARFNDALTVVERLVKVTLYGSQI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 KLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLAQYCSEVHRQNTQQFVTLISTTMDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLAQYCSEVHRQNTQQFVTLISTTMDA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 ITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALRLVDKAQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALRLVDKAQV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAVAPQRKMPLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAVAPQRKMPLDD
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 TKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 FFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 QEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 SVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRT
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 AMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSCDGVDANQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSCDGVDANQ
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120
pF1KA0 KSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPPGTVKL
:::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPPGTVKL
1090 1100 1110 1120
>>CCDS59266.1 XPO6 gene_id:23214|Hs108|chr16 (1111 aa)
initn: 7273 init1: 7273 opt: 7273 Z-score: 8997.3 bits: 1676.6 E(32554): 0
Smith-Waterman score: 7273; 100.0% identity (100.0% similar) in 1111 aa overlap (15-1125:1-1111)
10 20 30 40 50 60
pF1KA0 MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYV
::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYV
10 20 30 40
70 80 90 100 110 120
pF1KA0 MMYSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MMYSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KA0 DWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KA0 QTVLGLLTGILETVWDKHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQPIPILDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QTVLGLLTGILETVWDKHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQPIPILDV
170 180 190 200 210 220
250 260 270 280 290 300
pF1KA0 ESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVNGSSQNCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVNGSSQNCV
230 240 250 260 270 280
310 320 330 340 350 360
pF1KA0 SGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKDNNAHTVKSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKDNNAHTVKSRL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KA0 EELDESYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EELDESYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDI
350 360 370 380 390 400
430 440 450 460 470 480
pF1KA0 WTLFLDYLTSKIKSRLGDKEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WTLFLDYLTSKIKSRLGDKEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDD
410 420 430 440 450 460
490 500 510 520 530 540
pF1KA0 DQQTEWQRYLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFIVTSGSGHRLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DQQTEWQRYLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFIVTSGSGHRLN
470 480 490 500 510 520
550 560 570 580 590 600
pF1KA0 ITAENDCRRLHCSLRDLSSLLQAVGRLAEYFIGDVFAARFNDALTVVERLVKVTLYGSQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ITAENDCRRLHCSLRDLSSLLQAVGRLAEYFIGDVFAARFNDALTVVERLVKVTLYGSQI
530 540 550 560 570 580
610 620 630 640 650 660
pF1KA0 KLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLAQYCSEVHRQNTQQFVTLISTTMDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLAQYCSEVHRQNTQQFVTLISTTMDA
590 600 610 620 630 640
670 680 690 700 710 720
pF1KA0 ITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALRLVDKAQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALRLVDKAQV
650 660 670 680 690 700
730 740 750 760 770 780
pF1KA0 LVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAVAPQRKMPLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAVAPQRKMPLDD
710 720 730 740 750 760
790 800 810 820 830 840
pF1KA0 TKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLS
770 780 790 800 810 820
850 860 870 880 890 900
pF1KA0 FFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVV
830 840 850 860 870 880
910 920 930 940 950 960
pF1KA0 QEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLA
890 900 910 920 930 940
970 980 990 1000 1010 1020
pF1KA0 SVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRT
950 960 970 980 990 1000
1030 1040 1050 1060 1070 1080
pF1KA0 AMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSCDGVDANQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSCDGVDANQ
1010 1020 1030 1040 1050 1060
1090 1100 1110 1120
pF1KA0 KSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPPGTVKL
:::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPPGTVKL
1070 1080 1090 1100 1110
1125 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:29:03 2016 done: Thu Nov 3 09:29:04 2016
Total Scan time: 4.870 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]