Result of FASTA (omim) for
pF1KA0391
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0391, 567 aa
1>>>pF1KA0391 567 - 567 aa - 567 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1071+/-0.000446; mu= 20.0302+/- 0.028
mean_var=67.2422+/-14.033, 0's: 0 Z-trim(111.2): 27 B-trim: 354 in 1/48
Lambda= 0.156406
statistics sampled from 19655 (19679) to 19655 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.231), width: 16
Scan time: 8.780
The best scores are: opt bits E(85289)
XP_016877326 (OMIM: 609947) PREDICTED: mitochondri ( 567) 3839 875.7 0
XP_016877325 (OMIM: 609947) PREDICTED: mitochondri ( 567) 3839 875.7 0
NP_001243607 (OMIM: 609947) mitochondrial ribonucl ( 567) 3839 875.7 0
NP_055487 (OMIM: 609947) mitochondrial ribonucleas ( 583) 2194 504.5 3.8e-142
XP_016877324 (OMIM: 609947) PREDICTED: mitochondri ( 583) 2194 504.5 3.8e-142
XP_011535712 (OMIM: 609947) PREDICTED: mitochondri ( 583) 2194 504.5 3.8e-142
XP_011535711 (OMIM: 609947) PREDICTED: mitochondri ( 583) 2194 504.5 3.8e-142
XP_005268294 (OMIM: 609947) PREDICTED: mitochondri ( 583) 2194 504.5 3.8e-142
NP_001243608 (OMIM: 609947) mitochondrial ribonucl ( 488) 1667 385.5 2.1e-106
NP_001243609 (OMIM: 609947) mitochondrial ribonucl ( 211) 1456 337.7 2.3e-92
NP_001243610 (OMIM: 609947) mitochondrial ribonucl ( 211) 1456 337.7 2.3e-92
>>XP_016877326 (OMIM: 609947) PREDICTED: mitochondrial r (567 aa)
initn: 3839 init1: 3839 opt: 3839 Z-score: 4679.1 bits: 875.7 E(85289): 0
Smith-Waterman score: 3839; 100.0% identity (100.0% similar) in 567 aa overlap (1-567:1-567)
10 20 30 40 50 60
pF1KA0 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LLDILSYLRNNQLYPGESFAHSIKTWFESGQCSGCGKTIESIQLSPEEYECLKGKIMRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLDILSYLRNNQLYPGESFAHSIKTWFESGQCSGCGKTIESIQLSPEEYECLKGKIMRDV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 IDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 NLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDPFLLYATLHSGNHCRFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDPFLLYATLHSGNHCRFI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 TRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSW
490 500 510 520 530 540
550 560
pF1KA0 HIPYDEDLVERCSCEVPTKWLCLHQKT
:::::::::::::::::::::::::::
XP_016 HIPYDEDLVERCSCEVPTKWLCLHQKT
550 560
>>XP_016877325 (OMIM: 609947) PREDICTED: mitochondrial r (567 aa)
initn: 3839 init1: 3839 opt: 3839 Z-score: 4679.1 bits: 875.7 E(85289): 0
Smith-Waterman score: 3839; 100.0% identity (100.0% similar) in 567 aa overlap (1-567:1-567)
10 20 30 40 50 60
pF1KA0 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LLDILSYLRNNQLYPGESFAHSIKTWFESGQCSGCGKTIESIQLSPEEYECLKGKIMRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLDILSYLRNNQLYPGESFAHSIKTWFESGQCSGCGKTIESIQLSPEEYECLKGKIMRDV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 IDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 NLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDPFLLYATLHSGNHCRFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDPFLLYATLHSGNHCRFI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 TRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSW
490 500 510 520 530 540
550 560
pF1KA0 HIPYDEDLVERCSCEVPTKWLCLHQKT
:::::::::::::::::::::::::::
XP_016 HIPYDEDLVERCSCEVPTKWLCLHQKT
550 560
>>NP_001243607 (OMIM: 609947) mitochondrial ribonuclease (567 aa)
initn: 3839 init1: 3839 opt: 3839 Z-score: 4679.1 bits: 875.7 E(85289): 0
Smith-Waterman score: 3839; 100.0% identity (100.0% similar) in 567 aa overlap (1-567:1-567)
10 20 30 40 50 60
pF1KA0 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LLDILSYLRNNQLYPGESFAHSIKTWFESGQCSGCGKTIESIQLSPEEYECLKGKIMRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLDILSYLRNNQLYPGESFAHSIKTWFESGQCSGCGKTIESIQLSPEEYECLKGKIMRDV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 IDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 NLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDPFLLYATLHSGNHCRFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDPFLLYATLHSGNHCRFI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 TRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSW
490 500 510 520 530 540
550 560
pF1KA0 HIPYDEDLVERCSCEVPTKWLCLHQKT
:::::::::::::::::::::::::::
NP_001 HIPYDEDLVERCSCEVPTKWLCLHQKT
550 560
>>NP_055487 (OMIM: 609947) mitochondrial ribonuclease P (583 aa)
initn: 2193 init1: 2193 opt: 2194 Z-score: 2672.9 bits: 504.5 E(85289): 3.8e-142
Smith-Waterman score: 3797; 97.3% identity (97.3% similar) in 583 aa overlap (1-567:1-583)
10 20 30 40 50 60
pF1KA0 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
250 260 270 280 290 300
310 320 330 340
pF1KA0 LLDILSYLRNNQLYPGESFAHSIKTWFES----------------GQCSGCGKTIESIQL
::::::::::::::::::::::::::::: :::::::::::::::
NP_055 LLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
490 500 510 520 530 540
530 540 550 560
pF1KA0 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
:::::::::::::::::::::::::::::::::::::::::::
NP_055 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
550 560 570 580
>>XP_016877324 (OMIM: 609947) PREDICTED: mitochondrial r (583 aa)
initn: 2193 init1: 2193 opt: 2194 Z-score: 2672.9 bits: 504.5 E(85289): 3.8e-142
Smith-Waterman score: 3797; 97.3% identity (97.3% similar) in 583 aa overlap (1-567:1-583)
10 20 30 40 50 60
pF1KA0 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
250 260 270 280 290 300
310 320 330 340
pF1KA0 LLDILSYLRNNQLYPGESFAHSIKTWFES----------------GQCSGCGKTIESIQL
::::::::::::::::::::::::::::: :::::::::::::::
XP_016 LLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
490 500 510 520 530 540
530 540 550 560
pF1KA0 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
:::::::::::::::::::::::::::::::::::::::::::
XP_016 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
550 560 570 580
>>XP_011535712 (OMIM: 609947) PREDICTED: mitochondrial r (583 aa)
initn: 2193 init1: 2193 opt: 2194 Z-score: 2672.9 bits: 504.5 E(85289): 3.8e-142
Smith-Waterman score: 3797; 97.3% identity (97.3% similar) in 583 aa overlap (1-567:1-583)
10 20 30 40 50 60
pF1KA0 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
250 260 270 280 290 300
310 320 330 340
pF1KA0 LLDILSYLRNNQLYPGESFAHSIKTWFES----------------GQCSGCGKTIESIQL
::::::::::::::::::::::::::::: :::::::::::::::
XP_011 LLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
490 500 510 520 530 540
530 540 550 560
pF1KA0 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
:::::::::::::::::::::::::::::::::::::::::::
XP_011 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
550 560 570 580
>>XP_011535711 (OMIM: 609947) PREDICTED: mitochondrial r (583 aa)
initn: 2193 init1: 2193 opt: 2194 Z-score: 2672.9 bits: 504.5 E(85289): 3.8e-142
Smith-Waterman score: 3797; 97.3% identity (97.3% similar) in 583 aa overlap (1-567:1-583)
10 20 30 40 50 60
pF1KA0 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
250 260 270 280 290 300
310 320 330 340
pF1KA0 LLDILSYLRNNQLYPGESFAHSIKTWFES----------------GQCSGCGKTIESIQL
::::::::::::::::::::::::::::: :::::::::::::::
XP_011 LLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
490 500 510 520 530 540
530 540 550 560
pF1KA0 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
:::::::::::::::::::::::::::::::::::::::::::
XP_011 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
550 560 570 580
>>XP_005268294 (OMIM: 609947) PREDICTED: mitochondrial r (583 aa)
initn: 2193 init1: 2193 opt: 2194 Z-score: 2672.9 bits: 504.5 E(85289): 3.8e-142
Smith-Waterman score: 3797; 97.3% identity (97.3% similar) in 583 aa overlap (1-567:1-583)
10 20 30 40 50 60
pF1KA0 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
250 260 270 280 290 300
310 320 330 340
pF1KA0 LLDILSYLRNNQLYPGESFAHSIKTWFES----------------GQCSGCGKTIESIQL
::::::::::::::::::::::::::::: :::::::::::::::
XP_005 LLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
490 500 510 520 530 540
530 540 550 560
pF1KA0 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
:::::::::::::::::::::::::::::::::::::::::::
XP_005 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
550 560 570 580
>>NP_001243608 (OMIM: 609947) mitochondrial ribonuclease (488 aa)
initn: 1667 init1: 1667 opt: 1667 Z-score: 2031.3 bits: 385.5 E(85289): 2.1e-106
Smith-Waterman score: 3160; 96.7% identity (96.7% similar) in 488 aa overlap (96-567:1-488)
70 80 90 100 110 120
pF1KA0 RYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLNSEEWD
::::::::::::::::::::::::::::::
NP_001 MNSQTEDHALAPVRNTIQLPTQPLNSEEWD
10 20 30
130 140 150 160 170 180
pF1KA0 KLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVKYLYLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVKYLYLC
40 50 60 70 80 90
190 200 210 220 230 240
pF1KA0 VFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVITPSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVITPSKK
100 110 120 130 140 150
250 260 270 280 290 300
pF1KA0 NYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNKLLDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNKLLDIL
160 170 180 190 200 210
310 320 330 340
pF1KA0 SYLRNNQLYPGESFAHSIKTWFES----------------GQCSGCGKTIESIQLSPEEY
:::::::::::::::::::::::: ::::::::::::::::::::
NP_001 SYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQLSPEEY
220 230 240 250 260 270
350 360 370 380 390 400
pF1KA0 ECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQL
280 290 300 310 320 330
410 420 430 440 450 460
pF1KA0 LLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDPFLLYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDPFLLYA
340 350 360 370 380 390
470 480 490 500 510 520
pF1KA0 TLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSY
400 410 420 430 440 450
530 540 550 560
pF1KA0 DTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
::::::::::::::::::::::::::::::::::::::
NP_001 DTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
460 470 480
>>NP_001243609 (OMIM: 609947) mitochondrial ribonuclease (211 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1779.3 bits: 337.7 E(85289): 2.3e-92
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 211 aa overlap (357-567:1-211)
330 340 350 360 370 380
pF1KA0 FESGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRP
::::::::::::::::::::::::::::::
NP_001 MRDVIDGGDQYRKTTPQELKRFENFIKSRP
10 20 30
390 400 410 420 430 440
pF1KA0 PFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEE
40 50 60 70 80 90
450 460 470 480 490 500
pF1KA0 VQKQASCFFADDISEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQKQASCFFADDISEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQ
100 110 120 130 140 150
510 520 530 540 550 560
pF1KA0 GHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQK
160 170 180 190 200 210
pF1KA0 T
:
NP_001 T
567 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:33:21 2016 done: Thu Nov 3 09:33:22 2016
Total Scan time: 8.780 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]