Result of FASTA (ccds) for
pF1KA0394
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0394, 412 aa
1>>>pF1KA0394 412 - 412 aa - 412 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0594+/-0.000896; mu= -4.3828+/- 0.054
mean_var=227.2272+/-45.676, 0's: 0 Z-trim(113.6): 19 B-trim: 13 in 1/52
Lambda= 0.085083
statistics sampled from 14208 (14224) to 14208 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.437), width: 16
Scan time: 2.070
The best scores are: opt bits E(32554)
CCDS58518.1 GAS7 gene_id:8522|Hs108|chr17 ( 412) 2762 351.5 8.3e-97
CCDS42263.1 GAS7 gene_id:8522|Hs108|chr17 ( 416) 2762 351.5 8.4e-97
CCDS11152.1 GAS7 gene_id:8522|Hs108|chr17 ( 476) 2762 351.6 9.4e-97
CCDS45611.1 GAS7 gene_id:8522|Hs108|chr17 ( 336) 2111 271.6 7.9e-73
>>CCDS58518.1 GAS7 gene_id:8522|Hs108|chr17 (412 aa)
initn: 2762 init1: 2762 opt: 2762 Z-score: 1851.5 bits: 351.5 E(32554): 8.3e-97
Smith-Waterman score: 2762; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)
10 20 30 40 50 60
pF1KA0 MVPPPPGEESQTVILPPGWQSYLSPQGRRYYVNTTTNETTWERPSSSPGIPASPGSHRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MVPPPPGEESQTVILPPGWQSYLSPQGRRYYVNTTTNETTWERPSSSPGIPASPGSHRSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LPPTVNGYHASGTPAHPPETAHMSVRKSTGDSQNLGSSSPSKKQSKENTITINCVTFPHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LPPTVNGYHASGTPAHPPETAHMSVRKSTGDSQNLGSSSPSKKQSKENTITINCVTFPHP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 DTMPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEFIRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DTMPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEFIRER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 IKIEEDYAKNLAKLSQNSLASQEEGSLGEAWAQVKKSLADEAEVHLKFSAKLHSEVEKPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IKIEEDYAKNLAKLSQNSLASQEEGSLGEAWAQVKKSLADEAEVHLKFSAKLHSEVEKPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 MNFRENFKKDMKKCDHHIADLRKQLASRYASVEKARKALTERQRDLEMKTQQLEIKLSNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MNFRENFKKDMKKCDHHIADLRKQLASRYASVEKARKALTERQRDLEMKTQQLEIKLSNK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 TEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTLELERLEVERVEMIRQHLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTLELERLEVERVEMIRQHLC
310 320 330 340 350 360
370 380 390 400 410
pF1KA0 QYTQLRHETDMFNQSTVEPVDQLLRKVDPAKDRELWVREHKTGNIRPVDMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QYTQLRHETDMFNQSTVEPVDQLLRKVDPAKDRELWVREHKTGNIRPVDMEI
370 380 390 400 410
>>CCDS42263.1 GAS7 gene_id:8522|Hs108|chr17 (416 aa)
initn: 2762 init1: 2762 opt: 2762 Z-score: 1851.4 bits: 351.5 E(32554): 8.4e-97
Smith-Waterman score: 2762; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:5-416)
10 20 30 40 50
pF1KA0 MVPPPPGEESQTVILPPGWQSYLSPQGRRYYVNTTTNETTWERPSSSPGIPASPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKPGMVPPPPGEESQTVILPPGWQSYLSPQGRRYYVNTTTNETTWERPSSSPGIPASPGS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA0 HRSSLPPTVNGYHASGTPAHPPETAHMSVRKSTGDSQNLGSSSPSKKQSKENTITINCVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HRSSLPPTVNGYHASGTPAHPPETAHMSVRKSTGDSQNLGSSSPSKKQSKENTITINCVT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA0 FPHPDTMPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FPHPDTMPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEF
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 IRERIKIEEDYAKNLAKLSQNSLASQEEGSLGEAWAQVKKSLADEAEVHLKFSAKLHSEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IRERIKIEEDYAKNLAKLSQNSLASQEEGSLGEAWAQVKKSLADEAEVHLKFSAKLHSEV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 EKPLMNFRENFKKDMKKCDHHIADLRKQLASRYASVEKARKALTERQRDLEMKTQQLEIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EKPLMNFRENFKKDMKKCDHHIADLRKQLASRYASVEKARKALTERQRDLEMKTQQLEIK
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA0 LSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTLELERLEVERVEMIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTLELERLEVERVEMIR
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA0 QHLCQYTQLRHETDMFNQSTVEPVDQLLRKVDPAKDRELWVREHKTGNIRPVDMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QHLCQYTQLRHETDMFNQSTVEPVDQLLRKVDPAKDRELWVREHKTGNIRPVDMEI
370 380 390 400 410
>>CCDS11152.1 GAS7 gene_id:8522|Hs108|chr17 (476 aa)
initn: 2762 init1: 2762 opt: 2762 Z-score: 1850.5 bits: 351.6 E(32554): 9.4e-97
Smith-Waterman score: 2762; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:65-476)
10 20 30
pF1KA0 MVPPPPGEESQTVILPPGWQSYLSPQGRRY
::::::::::::::::::::::::::::::
CCDS11 PDGGWWEGEKEDGLRGWFPASYVQLLEKPGMVPPPPGEESQTVILPPGWQSYLSPQGRRY
40 50 60 70 80 90
40 50 60 70 80 90
pF1KA0 YVNTTTNETTWERPSSSPGIPASPGSHRSSLPPTVNGYHASGTPAHPPETAHMSVRKSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YVNTTTNETTWERPSSSPGIPASPGSHRSSLPPTVNGYHASGTPAHPPETAHMSVRKSTG
100 110 120 130 140 150
100 110 120 130 140 150
pF1KA0 DSQNLGSSSPSKKQSKENTITINCVTFPHPDTMPEQQLLKPTEWSYCDYFWADKKDPQGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DSQNLGSSSPSKKQSKENTITINCVTFPHPDTMPEQQLLKPTEWSYCDYFWADKKDPQGN
160 170 180 190 200 210
160 170 180 190 200 210
pF1KA0 GTVAGFELLLQKQLKGKQMQKEMSEFIRERIKIEEDYAKNLAKLSQNSLASQEEGSLGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GTVAGFELLLQKQLKGKQMQKEMSEFIRERIKIEEDYAKNLAKLSQNSLASQEEGSLGEA
220 230 240 250 260 270
220 230 240 250 260 270
pF1KA0 WAQVKKSLADEAEVHLKFSAKLHSEVEKPLMNFRENFKKDMKKCDHHIADLRKQLASRYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WAQVKKSLADEAEVHLKFSAKLHSEVEKPLMNFRENFKKDMKKCDHHIADLRKQLASRYA
280 290 300 310 320 330
280 290 300 310 320 330
pF1KA0 SVEKARKALTERQRDLEMKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVEKARKALTERQRDLEMKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQ
340 350 360 370 380 390
340 350 360 370 380 390
pF1KA0 SKWFEEMVTTTLELERLEVERVEMIRQHLCQYTQLRHETDMFNQSTVEPVDQLLRKVDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SKWFEEMVTTTLELERLEVERVEMIRQHLCQYTQLRHETDMFNQSTVEPVDQLLRKVDPA
400 410 420 430 440 450
400 410
pF1KA0 KDRELWVREHKTGNIRPVDMEI
::::::::::::::::::::::
CCDS11 KDRELWVREHKTGNIRPVDMEI
460 470
>>CCDS45611.1 GAS7 gene_id:8522|Hs108|chr17 (336 aa)
initn: 2111 init1: 2111 opt: 2111 Z-score: 1421.0 bits: 271.6 E(32554): 7.9e-73
Smith-Waterman score: 2111; 100.0% identity (100.0% similar) in 320 aa overlap (93-412:17-336)
70 80 90 100 110 120
pF1KA0 PTVNGYHASGTPAHPPETAHMSVRKSTGDSQNLGSSSPSKKQSKENTITINCVTFPHPDT
::::::::::::::::::::::::::::::
CCDS45 MSNMENSFDDVSCLSPQNLGSSSPSKKQSKENTITINCVTFPHPDT
10 20 30 40
130 140 150 160 170 180
pF1KA0 MPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEFIRERIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEFIRERIK
50 60 70 80 90 100
190 200 210 220 230 240
pF1KA0 IEEDYAKNLAKLSQNSLASQEEGSLGEAWAQVKKSLADEAEVHLKFSAKLHSEVEKPLMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IEEDYAKNLAKLSQNSLASQEEGSLGEAWAQVKKSLADEAEVHLKFSAKLHSEVEKPLMN
110 120 130 140 150 160
250 260 270 280 290 300
pF1KA0 FRENFKKDMKKCDHHIADLRKQLASRYASVEKARKALTERQRDLEMKTQQLEIKLSNKTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FRENFKKDMKKCDHHIADLRKQLASRYASVEKARKALTERQRDLEMKTQQLEIKLSNKTE
170 180 190 200 210 220
310 320 330 340 350 360
pF1KA0 EDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTLELERLEVERVEMIRQHLCQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTLELERLEVERVEMIRQHLCQY
230 240 250 260 270 280
370 380 390 400 410
pF1KA0 TQLRHETDMFNQSTVEPVDQLLRKVDPAKDRELWVREHKTGNIRPVDMEI
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TQLRHETDMFNQSTVEPVDQLLRKVDPAKDRELWVREHKTGNIRPVDMEI
290 300 310 320 330
412 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:47:32 2016 done: Wed Nov 2 18:47:32 2016
Total Scan time: 2.070 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]