FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0406, 1089 aa
  1>>>pF1KA0406 1089 - 1089 aa - 1089 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2275+/-0.00105; mu= 16.9440+/- 0.064
 mean_var=72.6207+/-14.393, 0's: 0 Z-trim(104.4): 22  B-trim: 163 in 1/50
 Lambda= 0.150503
 statistics sampled from 7878 (7880) to 7878 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.242), width:  16
 Scan time:  4.410

The best scores are:                                      opt bits E(32554)
CCDS13300.1 TTI1 gene_id:9675|Hs108|chr20          (1089) 7106 1552.8       0


>>CCDS13300.1 TTI1 gene_id:9675|Hs108|chr20               (1089 aa)
 initn: 7106 init1: 7106 opt: 7106  Z-score: 8328.7  bits: 1552.8 E(32554):    0
Smith-Waterman score: 7106; 100.0% identity (100.0% similar) in 1089 aa overlap (1-1089:1-1089)

               10        20        30        40        50        60
pF1KA0 MAVFDTPEEAFGVLRPVCVQLTKTQTVENVEHLQTRLQAVSDSALQELQQYILFPLRFTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVFDTPEEAFGVLRPVCVQLTKTQTVENVEHLQTRLQAVSDSALQELQQYILFPLRFTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 KTPGPKRERLIQSVVECLTFVLSSTCVKEQELLQELFSELSACLYSPSSQKPAAVSEELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KTPGPKRERLIQSVVECLTFVLSSTCVKEQELLQELFSELSACLYSPSSQKPAAVSEELK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LAVIQGLSTLMHSAYGDIILTFYEPSILPRLGFAVSLLLGLAEQEKSKQIKIAALKCLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LAVIQGLSTLMHSAYGDIILTFYEPSILPRLGFAVSLLLGLAEQEKSKQIKIAALKCLQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 LLLQCDCQDHPRSLDELEQKQLGDLFASFLPGISTALTRLITGDFKQGHSIVVSSLKIFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLLQCDCQDHPRSLDELEQKQLGDLFASFLPGISTALTRLITGDFKQGHSIVVSSLKIFY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 KTVSFIMADEQLKRISKVQAKPAVEHRVAELMVYREADWVKKTGDKLTILIKKIIECVSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KTVSFIMADEQLKRISKVQAKPAVEHRVAELMVYREADWVKKTGDKLTILIKKIIECVSV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 HPHWKVRLELVELVEDLLLKCSQSLVECAGPLLKALVGLVNDESPEIQAQCNKVLRHFAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HPHWKVRLELVELVEDLLLKCSQSLVECAGPLLKALVGLVNDESPEIQAQCNKVLRHFAD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 QKVVVGNKALADILSESLHSLATSLPRLMNSQDDQGKFSTLSLLLGYLKLLGPKINFVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QKVVVGNKALADILSESLHSLATSLPRLMNSQDDQGKFSTLSLLLGYLKLLGPKINFVLN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 SVAHLQRLSKALIQVLELDVADIKIVEERRWNSDDLNASPKTSATQPWNRIQRRYFRFFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SVAHLQRLSKALIQVLELDVADIKIVEERRWNSDDLNASPKTSATQPWNRIQRRYFRFFT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 DERIFMLLRQVCQLLGYYGNLYLLVDHFMELYHQSVVYRKQAAMILNELVTGAAGLEVED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DERIFMLLRQVCQLLGYYGNLYLLVDHFMELYHQSVVYRKQAAMILNELVTGAAGLEVED
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 LHEKHIKTNPEELREIVTSILEEYTSQENWYLVTCLETEEMGEELMMEHPGLQAITSGEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LHEKHIKTNPEELREIVTSILEEYTSQENWYLVTCLETEEMGEELMMEHPGLQAITSGEH
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 TCQVTSFLAFSKPSPTICSMNSNIWQICIQLEGIGQFAYALGKDFCLLLMSALYPVLEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TCQVTSFLAFSKPSPTICSMNSNIWQICIQLEGIGQFAYALGKDFCLLLMSALYPVLEKA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 GDQTLLISQVATSTMMDVCRACGYDSLQHLINQNSDYLVNGISLNLRHLALHPHTPKVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GDQTLLISQVATSTMMDVCRACGYDSLQHLINQNSDYLVNGISLNLRHLALHPHTPKVLE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 VMLRNSDANLLPLVADVVQDVLATLDQFYDKRAASFVSVLHALMAALAQWFPDTGNLGHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VMLRNSDANLLPLVADVVQDVLATLDQFYDKRAASFVSVLHALMAALAQWFPDTGNLGHL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 QEQSLGEEGSHLNQRPAALEKSTTTAEDIEQFLLNYLKEKDVADGNVSDFDNEEEEQSVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QEQSLGEEGSHLNQRPAALEKSTTTAEDIEQFLLNYLKEKDVADGNVSDFDNEEEEQSVP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 PKVDENDTRPDVEPPLPLQIQIAMDVMERCIHLLSDKNLQIRLKVLDVLDLCVVVLQSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PKVDENDTRPDVEPPLPLQIQIAMDVMERCIHLLSDKNLQIRLKVLDVLDLCVVVLQSHK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 NQLLPLAHQAWPSLVHRLTRDAPLAVLRAFKVLRTLGSKCGDFLRSRFCKDVLPKLAGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NQLLPLAHQAWPSLVHRLTRDAPLAVLRAFKVLRTLGSKCGDFLRSRFCKDVLPKLAGSL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 VTQAPISARAGPVYSHTLAFKLQLAVLQGLGPLCERLDLGEGDLNKVADACLIYLSVKQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VTQAPISARAGPVYSHTLAFKLQLAVLQGLGPLCERLDLGEGDLNKVADACLIYLSVKQP
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 VKLQEAARSVFLHLMKVDPDSTWFLLNELYCPVQFTPPHPSLHPVQLHGASGQQNPYTTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VKLQEAARSVFLHLMKVDPDSTWFLLNELYCPVQFTPPHPSLHPVQLHGASGQQNPYTTN
             1030      1040      1050      1060      1070      1080

                
pF1KA0 VLQLLKELQ
       :::::::::
CCDS13 VLQLLKELQ
                




1089 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:36:00 2016 done: Thu Nov  3 09:36:01 2016
 Total Scan time:  4.410 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]