FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0409, 456 aa
  1>>>pF1KA0409 456 - 456 aa - 456 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6075+/-0.000738; mu= 8.9563+/- 0.045
 mean_var=157.5024+/-31.025, 0's: 0 Z-trim(115.0): 13  B-trim: 55 in 1/52
 Lambda= 0.102195
 statistics sampled from 15545 (15553) to 15545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.478), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS31411.1 RRP8 gene_id:23378|Hs108|chr11         ( 456) 3103 468.9 4.9e-132


>>CCDS31411.1 RRP8 gene_id:23378|Hs108|chr11              (456 aa)
 initn: 3103 init1: 3103 opt: 3103  Z-score: 2484.0  bits: 468.9 E(32554): 4.9e-132
Smith-Waterman score: 3103; 100.0% identity (100.0% similar) in 456 aa overlap (1-456:1-456)

               10        20        30        40        50        60
pF1KA0 MFEEPEWAEAAPVAAGLGPVISRPPPAASSQNKGSKRRQLLATLRALEAASLSQHPPSLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MFEEPEWAEAAPVAAGLGPVISRPPPAASSQNKGSKRRQLLATLRALEAASLSQHPPSLC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 ISDSEEEEEERKKKCPKKASFASASAEVGKKGKKKCQKQGPPCSDSEEEVERKKKCHKQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ISDSEEEEEERKKKCPKKASFASASAEVGKKGKKKCQKQGPPCSDSEEEVERKKKCHKQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LVGSDSAEDEKRKRKCQKHAPINSAQHLDNVDQTGPKAWKGSTTNDPPKQSPGSTSPKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LVGSDSAEDEKRKRKCQKHAPINSAQHLDNVDQTGPKAWKGSTTNDPPKQSPGSTSPKPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 HTLSRKQWRNRQKNKRRCKNKFQPPQVPDQAPAEAPTEKTEVSPVPRTDSHEARAGALRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HTLSRKQWRNRQKNKRRCKNKFQPPQVPDQAPAEAPTEKTEVSPVPRTDSHEARAGALRA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 RMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLT
              370       380       390       400       410       420

              430       440       450      
pF1KA0 NSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR
       ::::::::::::::::::::::::::::::::::::
CCDS31 NSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR
              430       440       450      




456 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:49:32 2016 done: Wed Nov  2 18:49:33 2016
 Total Scan time:  2.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]