Result of FASTA (ccds) for
pF1KA0418
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0418, 940 aa
1>>>pF1KA0418 940 - 940 aa - 940 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7320+/-0.000936; mu= -3.0230+/- 0.057
mean_var=263.0670+/-53.810, 0's: 0 Z-trim(113.9): 32 B-trim: 67 in 1/51
Lambda= 0.079075
statistics sampled from 14503 (14523) to 14503 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.446), width: 16
Scan time: 3.820
The best scores are: opt bits E(32554)
CCDS31278.1 SH3PXD2A gene_id:9644|Hs108|chr10 (1105) 6262 728.1 2.2e-209
CCDS78084.1 SH3PXD2B gene_id:285590|Hs108|chr5 ( 430) 620 84.3 5.6e-16
CCDS34291.1 SH3PXD2B gene_id:285590|Hs108|chr5 ( 911) 522 73.3 2.5e-12
>>CCDS31278.1 SH3PXD2A gene_id:9644|Hs108|chr10 (1105 aa)
initn: 6262 init1: 6262 opt: 6262 Z-score: 3872.6 bits: 728.1 E(32554): 2.2e-209
Smith-Waterman score: 6262; 100.0% identity (100.0% similar) in 940 aa overlap (1-940:166-1105)
10 20 30
pF1KA0 MILEQYVVVSNYKKQENSELSLQAGEVVDV
::::::::::::::::::::::::::::::
CCDS31 GSSKRKSVWLSSWAESPKKDVTGADATAEPMILEQYVVVSNYKKQENSELSLQAGEVVDV
140 150 160 170 180 190
40 50 60 70 80 90
pF1KA0 IEKNESGWWFVSTSEEQGWVPATYLEAQNGTRDDSDINTSKTGEEEKYVTVQPYTSQSKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IEKNESGWWFVSTSEEQGWVPATYLEAQNGTRDDSDINTSKTGEEEKYVTVQPYTSQSKD
200 210 220 230 240 250
100 110 120 130 140 150
pF1KA0 EIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDDLPTRKKNLAGPVEIIGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDDLPTRKKNLAGPVEIIGN
260 270 280 290 300 310
160 170 180 190 200 210
pF1KA0 IMEISNLLNKKASGDKETPPAEGEGHEAPIAKKEISLPILCNASNGSAVGVPDRTVSRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IMEISNLLNKKASGDKETPPAEGEGHEAPIAKKEISLPILCNASNGSAVGVPDRTVSRLA
320 330 340 350 360 370
220 230 240 250 260 270
pF1KA0 QGSPAVARIAPQRAQISSPNLRTRPPPRRESSLGFQLPKPPEPPSVEVEYYTIAEFQSCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QGSPAVARIAPQRAQISSPNLRTRPPPRRESSLGFQLPKPPEPPSVEVEYYTIAEFQSCI
380 390 400 410 420 430
280 290 300 310 320 330
pF1KA0 SDGISFRGGQKAEVIDKNSGGWWYVQIGEKEGWAPASYIDKRKKPNLSRRTSTLTRPKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SDGISFRGGQKAEVIDKNSGGWWYVQIGEKEGWAPASYIDKRKKPNLSRRTSTLTRPKVP
440 450 460 470 480 490
340 350 360 370 380 390
pF1KA0 PPAPPSKPKEAEEGPTGASESQDSPRKLKYEEPEYDIPAFGFDSEPELSEEPVEDRASGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPAPPSKPKEAEEGPTGASESQDSPRKLKYEEPEYDIPAFGFDSEPELSEEPVEDRASGE
500 510 520 530 540 550
400 410 420 430 440 450
pF1KA0 RRPAQPHRPSPASSLQRARFKVGESSEDVALEEETIYENEGFRPYAEDTLSARGSSGDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RRPAQPHRPSPASSLQRARFKVGESSEDVALEEETIYENEGFRPYAEDTLSARGSSGDSD
560 570 580 590 600 610
460 470 480 490 500 510
pF1KA0 SPGSSSLSLTRKNSPKSGSPKSSSLLKLKAEKNAQAEMGKNHSSASFSSSITINTTCCSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SPGSSSLSLTRKNSPKSGSPKSSSLLKLKAEKNAQAEMGKNHSSASFSSSITINTTCCSS
620 630 640 650 660 670
520 530 540 550 560 570
pF1KA0 SSSSSSSLSKTSGDLKPRSASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSVRPKPFLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSSSSSSLSKTSGDLKPRSASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSVRPKPFLN
680 690 700 710 720 730
580 590 600 610 620 630
pF1KA0 RAESQSQEKMDISTLRRQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSEGSRRSSSDLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RAESQSQEKMDISTLRRQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSEGSRRSSSDLI
740 750 760 770 780 790
640 650 660 670 680 690
pF1KA0 TLPATTPPCPTKKEWEGPATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TLPATTPPCPTKKEWEGPATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG
800 810 820 830 840 850
700 710 720 730 740 750
pF1KA0 ELEGWAPSHYLVLDENEQPDPSGKELDTVPAKGRQNEGKSDSLEKIERRVQALNTVNQSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELEGWAPSHYLVLDENEQPDPSGKELDTVPAKGRQNEGKSDSLEKIERRVQALNTVNQSK
860 870 880 890 900 910
760 770 780 790 800 810
pF1KA0 KATPPIPSKPPGGFGKTSGTPAVKMRNGVRQVAVRPQSVFVSPPPKDNNLSCALRRNESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KATPPIPSKPPGGFGKTSGTPAVKMRNGVRQVAVRPQSVFVSPPPKDNNLSCALRRNESL
920 930 940 950 960 970
820 830 840 850 860 870
pF1KA0 TATDGLRGVRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQRNSIPVSPVRPKPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TATDGLRGVRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQRNSIPVSPVRPKPI
980 990 1000 1010 1020 1030
880 890 900 910 920 930
pF1KA0 EKSQFIHNNLKDVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EKSQFIHNNLKDVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGW
1040 1050 1060 1070 1080 1090
940
pF1KA0 VPSNYLEKKN
::::::::::
CCDS31 VPSNYLEKKN
1100
>>CCDS78084.1 SH3PXD2B gene_id:285590|Hs108|chr5 (430 aa)
initn: 877 init1: 345 opt: 620 Z-score: 400.3 bits: 84.3 E(32554): 5.6e-16
Smith-Waterman score: 817; 48.8% identity (68.4% similar) in 285 aa overlap (1-283:152-396)
10 20 30
pF1KA0 MILEQYVVVSNYKKQENSELSLQAGEVVDV
:.:::::::.::.:::.::.::..:.:::.
CCDS78 FETRPEDLNPPKEEHIGKKKSGGDQTSVDPMVLEQYVVVANYQKQESSEISLSVGQVVDI
130 140 150 160 170 180
40 50 60 70 80 90
pF1KA0 IEKNESGWWFVSTSEEQGWVPATYLEAQNGTRDDSDINTSKTGEEEKYVTVQPYTSQSKD
:::::::::::::.::::::::: ::.:.:..:. ... :::::... :::....:
CCDS78 IEKNESGWWFVSTAEEQGWVPATCLEGQDGVQDEFSLQPE---EEEKYTVIYPYTARDQD
190 200 210 220 230
100 110 120 130 140 150
pF1KA0 EIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDDLPTRKKNLAGPVEIIGN
:...:.:..::::.::::::: ::: ::::::::::::: : . :.
CCDS78 EMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKK----------NSGEPL-----
240 250 260 270 280
160 170 180 190 200 210
pF1KA0 IMEISNLLNKKASGDKETPPAEGEGHEAPIAKKEISLPILCNASNGSAVGVPDRTVSRLA
:: : : .: ..: . .: ::: . .:
CCDS78 ------------------PPKPGPG--SPSHPGALDLDGVSRQQN--AVGREKELLSSQR
290 300 310 320
220 230 240 250 260
pF1KA0 QGSPAVARIAPQRAQISSPNLRTRPPPRRESSL--GFQLPKPPEPPSVEVEYYTIAEFQS
.: . :. ::..: ::::::. .. :..::::: ::.:: :::::::::.
CCDS78 DGRFEGRPVPDGDAKQRSPKMRQRPPPRRDMTIPRGLNLPKPPIPPQVEEEYYTIAEFQT
330 340 350 360 370 380
270 280 290 300 310 320
pF1KA0 CISDGISFRGGQKAEVIDKNSGGWWYVQIGEKEGWAPASYIDKRKKPNLSRRTSTLTRPK
: :::::..: :.:
CCDS78 TIPDGISFQAGLKVEDHKNVHLESPVEVPLRRIKMRTALGKHVAASMEM
390 400 410 420 430
>>CCDS34291.1 SH3PXD2B gene_id:285590|Hs108|chr5 (911 aa)
initn: 1222 init1: 370 opt: 522 Z-score: 334.9 bits: 73.3 E(32554): 2.5e-12
Smith-Waterman score: 1244; 32.1% identity (54.2% similar) in 951 aa overlap (1-939:152-910)
10 20 30
pF1KA0 MILEQYVVVSNYKKQENSELSLQAGEVVDV
:.:::::::.::.:::.::.::..:.:::.
CCDS34 FETRPEDLNPPKEEHIGKKKSGGDQTSVDPMVLEQYVVVANYQKQESSEISLSVGQVVDI
130 140 150 160 170 180
40 50 60 70 80 90
pF1KA0 IEKNESGWWFVSTSEEQGWVPATYLEAQNGTRDDSDINTSKTGEEEKYVTVQPYTSQSKD
:::::::::::::.::::::::: ::.:.:..:. .. . :::::... :::....:
CCDS34 IEKNESGWWFVSTAEEQGWVPATCLEGQDGVQDEFSL---QPEEEEKYTVIYPYTARDQD
190 200 210 220 230
100 110 120 130 140 150
pF1KA0 EIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDDLPTRKKNLAGPVEIIGN
:...:.:..::::.::::::: ::: ::::::::::::: : . :.
CCDS34 EMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKK----------NSGEPL-----
240 250 260 270 280
160 170 180 190 200 210
pF1KA0 IMEISNLLNKKASGDKETPPAEGEGHEAPIAKKEISLPILCNASNGSAVGVPDRTVSRLA
:: : : .: ..: . .: ::: . .:
CCDS34 ------------------PPKPGPG--SPSHPGALDLDGVSRQQN--AVGREKELLSSQR
290 300 310 320
220 230 240 250 260
pF1KA0 QGSPAVARIAPQRAQISSPNLRTRPPPRRESSL--GFQLPKPPEPPSVEVEYYTIAEFQS
.: . :. ::..: ::::::. .. :..::::: ::.:: :::::::::.
CCDS34 DGRFEGRPVPDGDAKQRSPKMRQRPPPRRDMTIPRGLNLPKPPIPPQVEEEYYTIAEFQT
330 340 350 360 370 380
270 280 290 300 310 320
pF1KA0 CISDGISFRGGQKAEVIDKNSGGWWYVQIGEKEGWAPASYIDKRKKPNLSRRTSTLTRPK
: :::::..: :.:::.:: .::::.:: .:::::::..::: :: ::. .::.
CCDS34 TIPDGISFQAGLKVEVIEKNLSGWWYIQIEDKEGWAPATFIDKYKK------TSNASRPN
390 400 410 420 430
330 340 350 360 370 380
pF1KA0 VPPPAPPSKPKEAEEGPTGASESQDSPRKLKYEEPEYDIPAFGFDSEPELSEE-----PV
: : . . . : ..: :.. . . .: : : .:: :.. :
CCDS34 FLAPLP-HEVTQLRLGEAAALENNTGSEATGPSRPLPDAPHGVMDSGLPWSKDWKGSKDV
440 450 460 470 480 490
390 400 410 420 430 440
pF1KA0 EDRASGERRPAQPHRPSPASSLQRARFKVGESSEDVALEEETIYENEGFRPYAEDTLSAR
.::.. . .. .... . .. .:.. : . : : : .:. :
CCDS34 LRKASSDMSASAGYEEISDPDMEE-KPSLPPRKESIIKSEGELLERERERQRTEQL---R
500 510 520 530 540 550
450 460 470 480 490 500
pF1KA0 GSSGDSDSPGSSSLSLTRKNSPKSGSPKSSSLLKLKAEKNAQAEMGKNHSSASFSSSITI
: . :: . :. : . ..: . : .:. .. :: . . ..
CCDS34 GPT--PKPPGVILPMMPAKHIPPA---RDSRRPEPKPDKSRLFQL-KNDMGLECGHKVLA
560 570 580 590 600
510 520 530 540 550 560
pF1KA0 NTTCCSSSSSSSSSLSKTSGDLKPRSASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSV
. . .. . .::.. :: :. :: ::. : : : :...:
CCDS34 KEV----KKPNLRPISKSKTDL-PEEKPDA----TPQ---------NPFLKSRPQVRP--
610 620 630 640
570 580 590 600 610 620
pF1KA0 RPKPFLNRAESQSQEKMDISTLRRQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSEGSR
.: : . :.....:: .:: .::: .::.:. : .:: .
CCDS34 KPAPSPKTEPPQGEDQVDICNLRSKLRP----------AKSQDKSL-------LDGEGPQ
650 660 670 680
630 640 650 660 670 680
pF1KA0 RSSSDLITLPATTPPCPTKKEWEGPATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESG
... ... . : :::. ..::
CCDS34 AVGGQDVAFSRSFLPG------EGPG----------RAQD--------------------
690 700 710
690 700 710 720 730 740
pF1KA0 WWYVRFGELEGWAPSHYLVLDENEQPDPSGKELDTVPAKGRQNEGKSDSLEKIERRVQAL
: :. .: .:.. .. : :. : : : .:: . :
CCDS34 ----RTGKQDGLSPKE---ISCRAPPRPA-KTTDPV--------SKSVPVP--------L
720 730 740
750 760 770 780 790
pF1KA0 NTVNQSKKATPPIPSKPPGGFGKTS-GTPAVK---MRNGVRQVAVRPQSVFVSPPPKDNN
. . :.. ..:: :: ...: : :. .. ..: : ... ::
CCDS34 QEAPQQRPVVPPRRPPPPKKTSSSSRPLPEVRGPQCEGHESRAAPTPGRALLVPPKAKPF
750 760 770 780 790 800
800 810 820 830 840 850
pF1KA0 LSCALRRNESLTATDGLRGVRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQRNS
:: .:: . : :: . ..:.. :. :.::. :
CCDS34 LS------NSLGGQDDTRGKGSLGPWGTGK------IGENREKAAAA------------S
810 820 830 840
860 870 880 890 900 910
pF1KA0 IPVSPVRPKPIEKSQFIHNNLKD-VYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYC
.: . ..::: .::..::.:::..:..::::. .:: :.: .:::.:
CCDS34 VPNA--------------DGLKDSLYVAVADFEGDKDTSSFQEGTVFEVREKNSSGWWFC
850 860 870 880
920 930 940
pF1KA0 QILDGVKPFKGWVPSNYLEKKN
:.:.:. ..::.:::::.::
CCDS34 QVLSGAPSWEGWIPSNYLRKKP
890 900 910
940 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:52:47 2016 done: Wed Nov 2 18:52:47 2016
Total Scan time: 3.820 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]