FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0431, 667 aa
  1>>>pF1KA0431 667 - 667 aa - 667 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5361+/-0.000416; mu= 4.7684+/- 0.026
 mean_var=185.2137+/-41.032, 0's: 0 Z-trim(115.4): 26  B-trim: 0 in 0/57
 Lambda= 0.094241
 statistics sampled from 25845 (25865) to 25845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.303), width:  16
 Scan time: 10.970

The best scores are:                                      opt bits E(85289)
NP_001287657 (OMIM: 614693) ATM interactor isoform ( 667) 4359 605.8 1.7e-172
NP_056066 (OMIM: 614693) ATM interactor isoform 1  ( 823) 4359 605.8  2e-172


>>NP_001287657 (OMIM: 614693) ATM interactor isoform 2 [  (667 aa)
 initn: 4359 init1: 4359 opt: 4359  Z-score: 3218.0  bits: 605.8 E(85289): 1.7e-172
Smith-Waterman score: 4359; 100.0% identity (100.0% similar) in 667 aa overlap (1-667:1-667)

               10        20        30        40        50        60
pF1KA0 MKMHAEKKHKCSKCSNSYGTEWDLKRHAEDCGKTFRCTCGCPYASRTALQSHIYRTGHEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKMHAEKKHKCSKCSNSYGTEWDLKRHAEDCGKTFRCTCGCPYASRTALQSHIYRTGHEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 PAEHRDPPSKKRKMENCAQNQKLSNKTIESLNNQPIPRPDTQELEASEIKLEPSFEDSCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAEHRDPPSKKRKMENCAQNQKLSNKTIESLNNQPIPRPDTQELEASEIKLEPSFEDSCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SNTDKQTLTTPPRYPQKLLLPKPKVALVKLPVMQFSVMPVFVPTADSSAQPVVLGVDQGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNTDKQTLTTPPRYPQKLLLPKPKVALVKLPVMQFSVMPVFVPTADSSAQPVVLGVDQGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ATGAVHLMPLSVGTLILGLDSEACSLKESLPLFKIANPIAGEPISTGVQVNFGKSPSNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATGAVHLMPLSVGTLILGLDSEACSLKESLPLFKIANPIAGEPISTGVQVNFGKSPSNPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 QELGNTCQKNSISSINVQTDLSYASQNFIPSAQWATADSSVSSCSQTDLSFDSQVSLPIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QELGNTCQKNSISSINVQTDLSYASQNFIPSAQWATADSSVSSCSQTDLSFDSQVSLPIS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 VHTQTFLPSSKVTSSIAAQTDAFMDTCFQSGGVSRETQTSGIESPTDDHVQMDQAGMCGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VHTQTFLPSSKVTSSIAAQTDAFMDTCFQSGGVSRETQTSGIESPTDDHVQMDQAGMCGD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 IFESVHSSYNVATGNIISNSLVAETVTHSLLPQNEPKTLNQDIEKSAPIINFSAQNSMLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFESVHSSYNVATGNIISNSLVAETVTHSLLPQNEPKTLNQDIEKSAPIINFSAQNSMLP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 SQNMTDNQTQTIDLLSDLENILSSNLPAQTLDHRSLLSDTNPGPDTQLPSGPAQNPGIDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQNMTDNQTQTIDLLSDLENILSSNLPAQTLDHRSLLSDTNPGPDTQLPSGPAQNPGIDF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 DIEEFFSASNIQTQTEESELSTMTTEPVLESLDIETQTDFLLADTSAQSYGCRGNSNFLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIEEFFSASNIQTQTEESELSTMTTEPVLESLDIETQTDFLLADTSAQSYGCRGNSNFLG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 LEMFDTQTQTDLNFFLDSSPHLPLGSILKHSSFSVSTDSSDTETQTEGVSTAKNIPALES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEMFDTQTQTDLNFFLDSSPHLPLGSILKHSSFSVSTDSSDTETQTEGVSTAKNIPALES
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 KVQLNSTETQTMSSGFETLGSLFFTSNETQTAMDDFLLADLAWNTMESQFSSVETQTSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVQLNSTETQTMSSGFETLGSLFFTSNETQTAMDDFLLADLAWNTMESQFSSVETQTSAE
              610       620       630       640       650       660

              
pF1KA0 PHTVSNF
       :::::::
NP_001 PHTVSNF
              

>>NP_056066 (OMIM: 614693) ATM interactor isoform 1 [Hom  (823 aa)
 initn: 4359 init1: 4359 opt: 4359  Z-score: 3216.6  bits: 605.8 E(85289): 2e-172
Smith-Waterman score: 4359; 100.0% identity (100.0% similar) in 667 aa overlap (1-667:157-823)

                                             10        20        30
pF1KA0                               MKMHAEKKHKCSKCSNSYGTEWDLKRHAED
                                     ::::::::::::::::::::::::::::::
NP_056 GPKFYCCPIEGCPRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHAED
        130       140       150       160       170       180      

               40        50        60        70        80        90
pF1KA0 CGKTFRCTCGCPYASRTALQSHIYRTGHEIPAEHRDPPSKKRKMENCAQNQKLSNKTIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 CGKTFRCTCGCPYASRTALQSHIYRTGHEIPAEHRDPPSKKRKMENCAQNQKLSNKTIES
        190       200       210       220       230       240      

              100       110       120       130       140       150
pF1KA0 LNNQPIPRPDTQELEASEIKLEPSFEDSCGSNTDKQTLTTPPRYPQKLLLPKPKVALVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LNNQPIPRPDTQELEASEIKLEPSFEDSCGSNTDKQTLTTPPRYPQKLLLPKPKVALVKL
        250       260       270       280       290       300      

              160       170       180       190       200       210
pF1KA0 PVMQFSVMPVFVPTADSSAQPVVLGVDQGSATGAVHLMPLSVGTLILGLDSEACSLKESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PVMQFSVMPVFVPTADSSAQPVVLGVDQGSATGAVHLMPLSVGTLILGLDSEACSLKESL
        310       320       330       340       350       360      

              220       230       240       250       260       270
pF1KA0 PLFKIANPIAGEPISTGVQVNFGKSPSNPLQELGNTCQKNSISSINVQTDLSYASQNFIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PLFKIANPIAGEPISTGVQVNFGKSPSNPLQELGNTCQKNSISSINVQTDLSYASQNFIP
        370       380       390       400       410       420      

              280       290       300       310       320       330
pF1KA0 SAQWATADSSVSSCSQTDLSFDSQVSLPISVHTQTFLPSSKVTSSIAAQTDAFMDTCFQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SAQWATADSSVSSCSQTDLSFDSQVSLPISVHTQTFLPSSKVTSSIAAQTDAFMDTCFQS
        430       440       450       460       470       480      

              340       350       360       370       380       390
pF1KA0 GGVSRETQTSGIESPTDDHVQMDQAGMCGDIFESVHSSYNVATGNIISNSLVAETVTHSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GGVSRETQTSGIESPTDDHVQMDQAGMCGDIFESVHSSYNVATGNIISNSLVAETVTHSL
        490       500       510       520       530       540      

              400       410       420       430       440       450
pF1KA0 LPQNEPKTLNQDIEKSAPIINFSAQNSMLPSQNMTDNQTQTIDLLSDLENILSSNLPAQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LPQNEPKTLNQDIEKSAPIINFSAQNSMLPSQNMTDNQTQTIDLLSDLENILSSNLPAQT
        550       560       570       580       590       600      

              460       470       480       490       500       510
pF1KA0 LDHRSLLSDTNPGPDTQLPSGPAQNPGIDFDIEEFFSASNIQTQTEESELSTMTTEPVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LDHRSLLSDTNPGPDTQLPSGPAQNPGIDFDIEEFFSASNIQTQTEESELSTMTTEPVLE
        610       620       630       640       650       660      

              520       530       540       550       560       570
pF1KA0 SLDIETQTDFLLADTSAQSYGCRGNSNFLGLEMFDTQTQTDLNFFLDSSPHLPLGSILKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SLDIETQTDFLLADTSAQSYGCRGNSNFLGLEMFDTQTQTDLNFFLDSSPHLPLGSILKH
        670       680       690       700       710       720      

              580       590       600       610       620       630
pF1KA0 SSFSVSTDSSDTETQTEGVSTAKNIPALESKVQLNSTETQTMSSGFETLGSLFFTSNETQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SSFSVSTDSSDTETQTEGVSTAKNIPALESKVQLNSTETQTMSSGFETLGSLFFTSNETQ
        730       740       750       760       770       780      

              640       650       660       
pF1KA0 TAMDDFLLADLAWNTMESQFSSVETQTSAEPHTVSNF
       :::::::::::::::::::::::::::::::::::::
NP_056 TAMDDFLLADLAWNTMESQFSSVETQTSAEPHTVSNF
        790       800       810       820   




667 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:54:53 2016 done: Wed Nov  2 18:54:55 2016
 Total Scan time: 10.970 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]